Identification and characterization of microsatellites in Norway spruce (Picea abies K.)

Genome

Volumn 40, Issue 4, 1997, Pages 411-419

  Pfeiffer, Antonella ^a   Olivieri, Angelo M ^a   Morgante, Michele ^a  

^a UNIVERSITY OF UDINE   (Italy)

Author keywords

Genome complexity; Hypervariability; Microsatellite; Picea abis; Repetitive DNA

Indexed keywords

ABIES; EMBRYOPHYTA; PICEA; PICEA ABIES;

EID: 0031200998     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g97-055     Document Type: Article

References (32)

1. Akkaya, M.S., Bhagwat, A.A., and Cregan, P.B. 1992. Length polymorphism of simple sequence repeat DNA in soybean. Genetics, 132: 1131-1139.
2. Bell, C.J., and Ecker, J.R. 1994. Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics, 19: 137-144.
3. Bruford, M.W., and Wayne, R.K. 1993. Microsatellites and their application to population genetic studies. Curr. Opin. Genet. Dev. 3: 939-943.
4. Dhillon, S.S. 1987. DNA in tree species. In Cell and tissue culture in forestry. Edited by J.M. Bonga and D.J. Durzan. Nijhoff, Dordrecht, The Netherlands. pp. 298-313.
5. Don, R.H., Cox, P.T., Wainwright, B.J., Baker, K., and Mattick, J.S. 1991. Touchdown PCR to circumvent spurious priming during gene amplification. Nucleic Acids Res. 19: 4008.
6. Doyle, J.J., and Doyle, J.L. 1990. Isolation of plant DNA from fresh tissue. Focus (Gaithersburg, Md.), 12: 13-15.
7. Feinberg, A.P., and Vogelstein, B. 1983. A technique for radiolabelling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132: 6-13.
8. Giannini, R., Morgante, M., and Vendramin, G.G. 1991. Allozyme variation in Italian populations of Picea abies K. Silvae Genet. 40: 160-165.
9. Govindaraju, R.D., and Cullis, C.A. 1991. Modulation of genome size in plants: the influence of breeding system and neighbourhood size. Evol. Trends Plants, 5: 43-51.
10. Karagyozov, L., Kalcheva, I., and Chapman, V.M. 1993. Construction of random small-insert genomic libraries highly enriched for simple sequence repeats. Nucleic Acids Res. 21: 3911-3912.
11. Kostia, S., Varvio, S.-L., Vakkari, P., and Pulkkinen, P. 1995. Microsatellite sequences in a conifer, Pinus sylvestris. Genome, 38: 1244-1248.
12. Lagercrantz, U., and Ryman, N. 1990. Genetic structure of Norway spruce (Picea abies): concordance of morphological and allozymic variation. Evolution, 44: 38-53.
13. Lagercrantz, U., Ellegren, H., and Andersson, L. 1993. The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Res. 21: 1111-1115.
14. Litt, M.E., and Luty, J.A. 1989. A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am. J. Hum. Genet. 44: 388-396.
15. n microsatellite repeat sequences directly from flow-sorted chromosomes. Nucleic Acids Res. 21: 4641-4642.
16. Morgante, M., and Olivieri, A.M. 1993. PCR-amplified microsatellites as markers in plant genetics. Plant J. 3: 175-182.
17. Morgante, M., and Vendramin, G.G. 1991.Genetic variation in Italian populations of Picea abies (L.) Karst. and Pinus leucodermis Ant. In Genetic variation in European populations of forest trees. Edited by G. Muller-Starck and M. Ziehe. J.D. Sauerlaender's Verlag, Frankfurt am Main, Germany. pp. 205-227.
18. Neale, D.B., and Williams, C.G. 1991. Restriction fragment length polymorphism mapping in conifers and applications to forest genetics and tree improvement. Can. J. For. Res. 21: 545-554.
19. Nei, M. 1973. Analysis of gene diversity in subdivided populations. Am. Nat. 106: 238-292.
20. Olson, M., Hod, L., Cantor, C., and Botstein, D. 1989. A common language for physical mapping of the human genome. Science (Washington, D.C.), 245: 1434-1435.
21. Ostrander, E.A., Jong, P.M., Rine, J., and Duyk, G. 1992. Construction of small-insert genomic DNA libraries highly enriched for microsatellite repeat sequences. Proc. Natl. Acad. Sci. U.S.A. 89: 3419-3423.
22. Powell, W., Morgante, M., Mcdevitt, R., Vendramin, G.G., and Rafalski, J.A. 1995a. Polymorphic simple sequence repeat regions in chloroplast genomes: applications to the population genetics of pines. Proc. Natl. Acad. Sci. U.S.A. 92: 7759-7763.
23. Powell, W., Morgante, M., Andre, C., McNicol, G., Doyle, J.J., and Rafalski, J.A. 1995b. Hypervariable chloroplast simple sequence repeats provide a general source of polymorphic DNA markers for the chloroplast genome. Curr. Biol. 5: 1023-1029.
24. Powell, W., Morgante, M., Doyle, J.J., McNicol, J.W., Tingey, S.V., and Rafalski, J.A. 1996. Genepool variation in genus Glycine sub-genus Soja revealed by polymorphic nuclear and chloroplast microsatellites. Genetics, 144: 793-803.
25. Rafalski, J.A., Vogel, J.M., Morgante, M., Powell, W., and Tingey, S.V. 1996. Generating and using DNA markers in plants. In Nonmammalian genomic analysis - a practical guide. Edited by B. Birren and E. Lai. Academic Press, San Diego, Calif. pp. 75-134.
26. Roeder, M.S., Plaschke, J., König, S.U., Börner, A., Sorrells, M.E., Tanksley, S.D., and Ganal, M.W. 1995. Abundance, variability and chromosomal location of microsatellites in wheat. Mol. Gen. Genet. 246: 327-333.
27. Rongwen, J., Cregan, P.B., Akkaya, M.S., Bhagwata, A., and Lavi, U. 1995. The use of simple sequence repeat DNA markers for soybean genotype identification. Theor. Appl. Genet. 90: 43-48.
28. Sambrook, J., Fritsch, E.F., and Maniatis, T. 1989. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.
29. Smith, D.N., and Devey, M.E. 1994. Occurrence and inheritance of microsatellites in Pinus radiata. Genome, 37: 977-983.
30. Tautz, D. 1989. Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res. 17: 6463-6471.
31. Wakamiya, I., Newton, R.J., Johnston, J.S., and Price, H.J. 1993. Genome size and environmental factors in the genus Pinus. Am. J. Bot. 80: 1235-1241.
32. Wang, Z., Weber, J.L., Zhong, G., and Tanksley, S.D. 1994. Survey of plant short tandem DNA repeats. Theor. Appl. Genet. 88: 1-6.