Characterisation and inheritance of polymorphic plastid microsatellites in Abies

Genome

Volumn 40, Issue 6, 1997, Pages 857-864

  Vendramin, G G ^a   Ziegenhagen, B ^b  

^a CNR   (Italy)

^b Federal Research Centre for Forestry and Forest Products   (Germany)

Author keywords

Abies; Chloroplast simple sequence repeats; Inheritance; Intraspecific variation; Population genetics; Sequences

Indexed keywords

ABIES; ABIES ALBA; EMBRYOPHYTA; PINUS THUNBERGII;

EID: 0031415343     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g97-811     Document Type: Article

References (24)

1. Boscherini, G., Morgante, M., Rossi, P., and Vendramin, G.G. 1994. Allozyme and chloroplast DNA variation in Italian and Greek populations of Pinus leucodermis. Heredity, 73: 284-290.
2. Bousquet, J., Strauss, S.H., Doerksen, A.H., and Price, R.A. 1992. Extensive variation in evolutionary rate of rbcL gene sequences among seed plants. Proc. Natl. Acad. Sci. U.S.A. 89: 7844-7848.
3. Cato, S.A., and Richardson, T.E. 1996. Inter- and intraspecific polymorphism at chloroplast SSR loci and the inheritance of plastids in Pinus radiata D. Don. Theor. Appl. Genet. 93: 587-592.
4. Demesure, B., Comps, B., and Petit, R.J. 1996. Chloroplast DNA phylogeography of the common beech (Fagus sylvatica L.) in Europe. Evolution, 50: 2515-2520.
5. Dumolin-Lapègue, S., Demesure, B., Fineschi, S., Le Corre, V., and Petit, R.J. 1997. Phylogeographic structure of white oaks throughout the European continent. Genetics. In press.
6. Echt, C.S., May-Marquardt, P., Hseih, M., and Zahorchak, R. 1996. Characterization of microsatellite markers in eastern white pine. Genome, 39: 1102-1108.
7. Goldstein, D.B., Linares, A.R., Cavalli-Sforza, L.L., and Feldman, M.W. 1995. An evaluation of genetic distances for use with microsatellite loci. Genetics, 139: 463-471.
8. Hipkins, V.D., Marshall, K.A., Neale, D.B., Rottman, W.H., and Strauss, S.H. 1995. A mutation hotspot in the chloroplast genome of a conifer (Douglas-fir: Pseudsuga) is caused by variability in the number of direct repeats derived from partially duplicated tRNA gene. Curr Genet. 27: 572-579.
9. Jarne, P., and Lagoda, J.L. 1996. Microsatellites, from molecules to populations and back. Tree, vol. 11. Elsevier Science Ltd. pp. 424-429.
10. Karhu, A., Hurme, P., Karjalainen, M., Karvonen, P., Kärkkäinen, K., Neale, D., and Savolainen, O. 1996. Do molecular markers reflect patterns of differentiation in adaptive traits of conifers? Theor. Appl. Genet. 93: 215-221.
11. Owens, J.N., and Morris, S.J. 1990. Cytological basis for cytoplasmic inheritance in Pseudotsuga menziesii. I. Pollen tube and archegonial development. Am. J. Bot. 77: 433-445.
12. Owens, J.N., and Morris, S.J. 1991. Cytological basis for cytoplasmic inheritance in Pseudotsuga menziesii. II. Fertilization and proembryo development. Am. J. Bot. 78: 1515-1527.
13. Powell, W., Morgante, M., McDevitt, R., Vendramin, G.G., and Rafalski, J.A. 1995. Polymorphic simple sequence repeat regions in chloroplast genomes: applications to the population genetics of pines. Proc. Natl. Acad. Sci. U.S.A. 99: 7759-7763.
14. Schuler, G.D., Altshul, S.F., and Lipman, D.J. 1991. A workbench for multiple alignment construction and analysis. Proteins Struct. Funct. Genet. 9: 180-190.
15. Slatkin, M. 1995. A measure of population subdivision based on microsatellite allele frequencies. Genetics, 139: 457-462.
16. Van den Ven, W.T.G., and McNicol, R.J. 1996. Microsatellites as DNA markers in Sitka spruce. Theor. Appl. Genet. 93: 613-617.
17. Vendramin, G.G., Lelli, L., Rossi, P., and Morgante, M. 1996. A set of primers for the amplification of 20 chloroplast microsatellites in Pinaceae. Mol. Ecol. 5: 111-114.
18. Wagner, D.B. 1992. Nuclear, chloroplast, and mitochondrial DNA polymorphisms as biochemical markers in population genetic analyses of forest trees. New For. 6: 373-390.
19. Wakasugi, T., Tsudzuki, J., Ito, S., Shibata, M., and Sugiura, M. 1994. A physical map and clone bank of the black pine (Pinus thunbergii) chloroplast genome. Plant Mol. Biol. Rep. 12: 227-241.
20. Wang, X.-R., Szmidt, A.E., and Lu, M.-Z. 1996. Genetic evidence for the presence of cytoplasmic DNA in pollen and megagametophytes and maternal inheritance of mitochondrial DNA in Pinus. Forest Genetics, an International Journal of Forest Genetics, vol. 3. Edited by L. Paule. Arbora Publishers, Zvolen, Slovakia. pp. 37-44.
21. Wolfe, K.H., Li, H.-H., and Sharp, P.M. 1987. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc. Natl. Acad. Sci. U.S.A. 88: 9054-9085.
22. Ziegenhagen, B., Guillemaut, P., and Scholz, F. 1993. A procedure for mini-preparations of genomic DNA from needles of silver fir (Abies alba Mill.). Plant Mol. Biol. Rep. 11: 117-121.
23. Ziegenhagen, B., Kormuták, A., Schauerte, M., and Scholz, F. 1995. Restriction site polymorphism in chloroplast DNA of silver fir (Abies alba Mill.). Forest Genetics, an International Journal of Forest Genetics, vol. 2. Edited by L. Paule. Arbora Publishers, Zvolen, Slovakia, pp. 99-107.
24. Ziegenhagen, B., Schauerte, M., Kormuták, A., and Scholz, F 1996. Plastid DNA polymorphism of megagametophytes and pollen in two Abies species. Silvae Geneti. 45: 355-358.