Multimode interaction of hoechst 33258 with eukaryotic dna; quantitative analysis of the dna conformational changes

Journal of Biomolecular Structure and Dynamics

Volumn 15, Issue 4, 1998, Pages 779-791

  Steinmetzer, Katrin ^a   Reinert, Karl Ernst ^a  

^a FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

4 [5 (4 METHYL 1 PIPERAZINYL)[2,5' BI 1H BENZIMIDAZOL] 2' YL]PHENOL; CONGOCIDINE; CURVED DNA; DNA;

ARTICLE; CONFORMATIONAL TRANSITION; DNA HELIX; DRUG DNA INTERACTION; PRIORITY JOURNAL; TEMPERATURE DEPENDENCE; VISCOMETRY;

EUKARYOTA;

EID: 0031919484     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.1998.10508992     Document Type: Article

References (75)

1. Geierstanger, B. H., and Wemmer, D. E., 1995. Ann. Rev. Biophys. Biomolec. Struct., 24:463–469.
2. Doshi, P., Kaushal, S., Benyajati, Ch., and Wu, Ch. I., 1991. Mol. Biol. Evol., 8:721–741.
3. Zimmer, Ch., and Wähnert, U., 1986. Prog. Biophys. molec. Biol., 47:31–112.
4. Kumar, S., Joseph, T., Sing, M. P., Bathini, Y., and Lown, J. W., 1992. J. Biomolec. Str. & Dyn., 9:853–880.
5. Loewe, H., and Urbanietz, J., 1974. Arzeneim.-Forsch. (Drug Res.), 24:1927–1933.
6. Latt, S. A., and Wohlleb, J. C., 1975. Chromosoma, 52:297–316.
7. Loontiens, E. G., Regenfuss, P., Zechel, A., Dumortier, L., and Clegg, R. M., 1990. Biochemistry, 29:9029–9039.
8. Bontemps, J., Houssier, C., and Fredericq, E., 1975. Nucl. Acids Res., 2:971–984.
9. Zasedatelev, A. S., Mikhailow, A. S., Krylow, M. V., and Gursky, G. V., 1980. Dokl. Akad. Nauk, SSSR, 255:756–760. Studio Biophysica 87, 197–198 (1982)
10. Harshman, K. D., and Dervan, P. B., 1985. Nucl. Acids Res., 13:4825–4835.
11. Murray, U. V., and Martin, R. F., 1988. J. Mol. Biol., 203:63–73.
12. Moon, J.-H., Kim, S. K., Sehlstedt, U., Rodger, A., and Nordèn, B., 1996. Biopolymers, 38:593–606.
13. Bailly, Ch., Colson, P., Hènichart, J.-P., and Houssier, C., 1993. Nucl. Acids Res., 21:3705–3709.
14. Adnet, F., Liquier, J., Taillandier, E., Singh, M. P., Rao, K. E., and Lown, J. W., 1992. J. Biomolec. Struct. & Dyn., 10:565–575.
15. Fritzsche, H., 1994. Nucl. Acids Res., 22:785–791.
16. Searle, M. S., and Embrey, K. J., 1990. Nucl. Acids Res., 18:3753–3762.
17. Embrey, K. J., Saearle, M. S., and Craik, D. J., 1993. Eur. J. Biochem., 211:437–497.
18. Pjura, P. E., Grzeskowiak, K., and Dickerson, R. E., 1987. J. Mol. Biol., 197:257–271.
19. Teng, M., Usman, N., Frederik, Ch. A., and Wang, A. H.-J., 1988. Nucl. Acids Res., 16:2671–2690.
20. Corrando, M. A.A.F.de C.T., Coll, M., Aymami, J., Wang, A. H.-J., van der Marel, G. A., van Boom, J. H., and Rich, A., 1989. Biochemistry, 28:7849–7859.
21. Spink, N., Brown, D. G., Skelly, J. V., and Neidle, S., 1994. Nucl. Acids Res., 22:1607–1612.
22. Vega, M. C., Garcia Saez, I., Aymami, J., Eritya, R., Van der Marel, G. A., van Boom, J. H., Rich, A., and Coll, M., 1994. Eur. J. Biochem., 222:721–726.
23. Comings, D. E., 1975. Chromosoma, 52:229–243.
24. Abu-Daya, A., Brown, Ph. M., and Fox, K. R., 1995. Nucl. Acids Res., 23:3385–3392.
25. Colson, P., Houssier, C., and Bailey, C., 1995. J. Biomolec. Struct. & Dyn., 13:351–366.
26. Reinert, K. E., Stutter, E., and Schweiss, H., 1979. Nucl. Acids Res., 7:1375–1392.
27. Reinert, K. E., 1991. J. Biomolec. Struct. & Dyn., 9:331–352.
28. Reinert, K. E., 1993. J. Biomolec. Struct. & Dyn., 10:973–990.
29. Reinert, K. E., 1973. “Physico-chemical Properties of Nucleic Acids” Vol Edited by:Duchesne, J., Vol. 2, 319–356. London:Academic Press.
30. Reinert, K. E., Geller, K., and Burckhardt, G., 1991. J. Biomolec. Struct. & Dynamics, 9:537–552.
31. Reinert, K. E., 1981. Biophysical Chem., 13:1–14.
32. Müller, W., and Crothers, D. M., 1968. J. Mol. Biol., 35:251–290.
33. Schütz, H., Stutter, E., Weiler, K., and Petri, I., 1984. Studia Biophysica, 104:23–34.
34. Reinert, K. E., 1972. J. Mol. Biol., 72:593–607.
35. Tanford, Ch., 1961. Physical Chemistry of Macromolecules New York:J. Wiley.
36. Reinert, K. E., and Geller, K., 1974. Studia Biophysica, 45:1–11.
37. Zimmer, Ch., Reinert, K. E., Luck, G., Wähnert, U., Löber, G., and Thrum, H., 1971. J. Molec. Biol., 58:329–348.
38. Reinert, K. E., Geller, D., and Stutter, E., 1981. Nucl. Acids Res., 9:2335–2349.
39. Reinert, K. E., Zimmer, C., and Arcamone, F., 1996. J. Biomolec. Struct. & Dyn., 14:245–253.
40. Drew, H., and Travers, A. A., 1985. J. Molec. Biol., 186:773–790.
41. Satchwell, S. C., Drew, H. R., and Travers, A. A., 1986. J. Mol. Biol., 191:659–675.
42. Benfante, R., Landsberger, N., Tubiello, G., and Badaracco, G., 1989. Nucl. Acids Res., 17:8273–8282.
43. Beridze, T., Tsirekidze, N., and Roytberg, M. A., 1992. Biochimie, 74:187–194.
44. Geller, K., and Reinert, K. E., 1980. Nucl. Acids Res., 8:2807–2822.
45. Reinert, K. E., in preparation
46. Reinert, K. E., unpublished
47. Triebel, H., Bär, H., Walter, A., Burckhardt, G., and Zimmer, C., 1994. J. Biomolec. Struct. & Dyn., 11:1085–1105.
48. Malcolm, A. D.B., and Snounou, G., 1983. Cold Spring Habour Symp Quantit. Biol., 47:323–326.
49. Reinert, K. E., 1983. Nucl. Acids Res., 11:3411–3430.
50. Schütz, H., and Reinert, K. E., 1991. J. Biomolec. Struct. & Dyn., 9:315–329.
51. Diekmann, S., 1987. Nucl. Acids Res., 15:247–265.
52. Shlyaktenko, L. S., Lyubchenko, Yu. L., Chernov, B. K., and Zhurkin, V. B., 1990. Molekül. Biol., 24:7995
53. Doshi, P., Kaushal, S., Benyajati, C., and Wu, Ch.-I., 1991. Mol. Biol. Evol., 8:721–741.
54. Bloomfield, V. A., Crothers, D. M., and Tinoco, I., Jr. 1974. Physical Chemistry of Nucleic Acids 495New York:Harper & Row.
55. 0 rise at 7°C is seen without any calculation already from the elementary fact that Δy(r;/) is steeper than Δy(r;h) (26)
56. 1 Hoe for mode (-1) is comparable to but more pronounced than that of mode (O) interaction of Nt with the ammonium salt of ctDNA (Table Illb)
57. Fede, A., Labhardt, A., Bannwarth, W., and Leupin, W., 1991. Biochem., 30:11377–11388.
58. Parkinson, J. A., Barber, J., Kenneth, T. D., Rosamund, J., and Sharpies, D., 1990. Biochem., 29:10181–10190.
59. Browne, K. A., He, G. X., and Bruice, T. C., 1993. J. Am. Chem. Soc., 115:7072–7079.
60. Pelton, J. G., and Wemmer, D. E., 1990. J. Am. Chem. Soc., 112:1393–1399.
61. Lebrun, A., and Lavery, R., 1996. Nucl. Acids Res., 24:2260–2267.
62. Anderson, P., and Bauer, W., 1978. Biochemistry, 17:594–601.
63. Steinmetzer, K., and Reinert, K. E., unpubl
64. Bartenev, V. N., Golovanov, E. I., Kapitonova, K. A., Mokulskii, M. A., Volkova, L. I., and Skuratovskii, Ya. I., 1983. J. Mol. Biol., 169:217–234.
65. Rinehardt, F. P., and Hearst, J. E., 1972. Arch. Biochem. Biophys., 152:712–722. 723–733
66. Reinert, K. E., 1993. J. Biomolec. Struct. & Dyn., 10:991–1000.
67. Geller, K., 1980. Studia Biophysica, 81:101–102.
68. Luck, G., Reinert, K. E., Baguley, B., and Zimmer, C., 1987. J. Biomolec. Struct. & Dynamic, 4:1079–1094.
69. Schleif, R., 1992. Ann. Rev. Biochem., 61:199–223.
70. Barcelo, F., Muzard, G., Mendoza, R., Revet, B., Roques, B. P., and Le Pecq, J.-B., 1991. Biochem., 30:4863–4873.
71. Griffith, J. D., Laundon, C. H., Rauch, C. A., Hsieh, W.-T., and Wells, R. D., 1988. Structure & Expression, Vol.3:DNA Bending and Curvature Edited by:Olson, W. K., Sarma, M. H., Sarma, R. H., and Sundaralingam, M., Adenine Press.
72. Low, C. M.L., Drew, H. R., and Waring, M. J., 1986. Nucl. Acids Res., 14:6785–6801.
73. Waring, M., 1987. NATO ASI Series, Vol A Edited by:Guschlbauer, W., and Sänger, W., Vol. 137, 113–125. New York:Plenum Press.
74. Ciaverie-Martin, F., and Magasanik, B., 1992. J. Mol. Biol., 227:996–1008.
75. Relatively large deviations of experimental points from the broken least-squares straight lines like for those in parentheses appear occasionally and vanish again at higher r values. They are suggested to be a result of an uncorrect wetting boundary between DNA solution and viscometer rotor. The disturbtion seems to be reduced during the repeated mixing procedure accompanying ligand addition