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Journal of the American Chemical Society

Volumn 123, Issue 18, 2001, Pages 4107-4118

Long-range cooperativity in molecular recognition of RNA by oligodeoxynucleotides with multiple C5-(1-propynyl) pyrimidines

(2) Barnes III, T W a Turner, D H a

a UNIVERSITY OF ROCHESTER (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MOLECULAR RECOGNITION;

ANTIGENS; DNA; FREE ENERGY; HYDROGEN BONDS; MOLECULAR ORIENTATION; THERMODYNAMIC PROPERTIES;

RNA;

COMPLEMENTARY RNA; DOUBLE STRANDED DNA; DOUBLE STRANDED RNA; GUANOSINE DERIVATIVE; HYDROGEN; INOSINE DERIVATIVE; OLIGODEOXYNUCLEOTIDE DERIVATIVE; PROPANE; PYRIMIDINE DERIVATIVE; RNA; VIRUS LARGE T ANTIGEN;

AMINO ACID SUBSTITUTION; ARTICLE; BINDING AFFINITY; CIRCULAR DICHROISM; DNA RNA HYBRIDIZATION; ENERGY TRANSFER; GEOMETRY; HYDROGEN BOND; MELTING POINT; MOLECULAR RECOGNITION; MOLECULAR STABILITY; NUCLEIC ACID ANALYSIS; NUCLEOTIDE SEQUENCE; RNA ANALYSIS; STRUCTURE ANALYSIS; THERMODYNAMICS; ULTRAVIOLET RADIATION;

ADENOSINE; CIRCULAR DICHROISM; DNA; GUANOSINE; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; OLIGONUCLEOTIDES; PYRIMIDINES; REGRESSION ANALYSIS; RNA; THERMODYNAMICS; ULTRAVIOLET RAYS;

EID: 0034794425 PISSN: 00027863 EISSN: None Source Type: Journal
DOI: 10.1021/ja003208t Document Type: Article

Times cited : (66)

References (86)

1
- 0003214802
- note

2
- 0029943016
- (1996) Nat. Biotechnol. , vol.14 , pp. 840-844
- Wagner, R.W.¹ Matteucci, M.D.² Grant, D.³ Huang, T.⁴ Froehler, B.C.⁵

3
- 0031171902
- (1997) Chem. Biol. , vol.4 , pp. 409-414
- Pearson, N.D.¹ Prescott, N.D.²

4
- 0028806048
- (1995) Science , vol.270 , pp. 467-470
- Schena, M.¹ Shalon, D.² Davis, R.W.³ Brown, P.O.⁴

5
- 0032078362
- (1998) Nucleic Acids Res. , vol.26 , pp. 2150-2155
- Leone, G.¹ Van Schijndel, H.² Van Gemen, B.³ Kramer, F.R.⁴ Schoen, C.D.⁵

6
- 0041582974
- (1978) Proc. Natl. Acad. Sci. U.S.A. , vol.75 , pp. 280-284
- Zamecnik, P.C.¹ Stephenson, M.L.²

7
- 0029781508
- (1996) Nature , vol.382 , pp. 607-609
- Mirkin, C.A.¹ Letsinger, R.L.² Mucic, R.C.³ Storhoff, J.J.⁴

8
- 0029781455
- (1996) Nature , vol.382 , pp. 609-611
- Alivisatos, A.P.¹ Johnsson, K.P.² Peng, X.³ Wilson, T.E.⁴ Loweth, C.J.⁵ Bruchez M.P., Jr.⁶ Schultz, P.G.⁷

9
- 0031804028
- (1998) Annu. Rev. Biomol. Struct. , vol.27 , pp. 225-248
- Seeman, N.C.¹

10
- 0002084217
- Gesteland, R. F., Cech, T. R., Atkins, J. F., Eds.; Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY
- (1999) The RNA World, 2nd ed. , pp. 233-264
- Burkard, M.E.¹ Turner, D.H.² Tinoco I., Jr.³

11
- 0002635816
- Bloomfield, V. A., Crothers, D. M., Tinoco, I., Eds.; University Science Books: Sausolito, CA
- (2000) Nucleic Acids, Structures, Properties, Functions , pp. 259-336
- Turner, D.H.¹

12
- 0000791323
- (1974) J. Mol. Biol. , vol.241 , pp. 246-262
- Borer, P.N.¹ Dengler, B.² Tinoco I., Jr.³ Uhlenbeck, O.C.⁴

13
- 0032552882
- (1998) Biochemistry , vol.42 , pp. 14719-14735
- Xia, T.¹ SantaLucia J., Jr.² Burkard, M.E.³ Kierzek, R.⁴ Schroeder, S.J.⁵ Jiao, X.⁶ Cox, C.⁷ Turner, D.H.⁸

14
- 0032539693
- (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 1460-1465
- SantaLucia J., Jr.¹

15
- 0029968822
- (1996) Biochemistry , vol.35 , pp. 3555-3562
- SantaLucia J., Jr.¹ Allawi, H.T.² Seneviratne, P.A.³

16
- 0029134549
- (1995) Biochemistry , vol.34 , pp. 11211-11216
- Sugimoto, N.¹ Nakano, S.² Katoh, M.³ Matsumura, A.⁴ Nakamuta, H.⁵ Ohmichi, T.⁶ Yoneyama, M.⁷ Sasaki, M.⁸

17
- 0031543297
- (1997) Biopolymers , vol.42 , pp. 795-810
- Gray, D.¹

18
- 0033591465
- (1999) J. Mol. Biol. , vol.288 , pp. 911-940
- Mathews, D.H.¹ Sabina, J.² Zuker, M.³ Turner, D.H.⁴

19
- 0032729689
- (1999) RNA , vol.5 , pp. 1458-1469
- Mathews, D.H.¹ Burkard, M.E.² Freier, S.M.³ Wyatt, J.R.⁴ Turner, D.H.⁵

20
- 0033527352
- (1999) Biotechnol. Bioeng. , vol.65 , pp. 1-9
- Walton, S.P.¹ Stephanopoulos, G.N.² Yarmush, M.L.³ Roth, C.M.⁴

21
- 17344372249
- (1998) Annu. Rev. Biochem. , vol.67 , pp. 99-134
- Verma, S.¹ Eckstein, F.²

22
- 0020529728
- (1983) J. Med. Chem. , vol.26 , pp. 661-666
- De Clercq, E.¹ Descamps, J.² Balzarini, J.³ Giziewicz, J.⁴ Barr, P.J.⁵ Robins, M.J.⁶

23
- 33845185176
- (1989) J. Org. Chem. , vol.54 , pp. 3420-3422
- Hobbs, F.W.¹

24
- 0026783155
- (1992) Tetrahedron Lett. , vol.33 , pp. 5307-5310
- Froehler, B.C.¹ Wadwani, S.² Terhorst, T.J.³ Gerrard, S.R.⁴

25
- 0030727765
- (1997) Nucleic Acids Res. , vol.25 , pp. 4429-4443
- Freier, S.M.¹ Altmann, K.H.²

26
- 0027246678
- (1993) Science , vol.260 , pp. 1510-1513
- Wagner, R.W.¹ Matteucci, M.D.² Lewis, J.G.³ Gutierrez, A.J.⁴ Moulds, C.⁵ Froehler, B.C.⁶

27
- 0028968912
- (1995) Biochemistry , vol.34 , pp. 5044-5053
- Moulds, C.¹ Lewis, J.G.² Froehler, B.C.³ Grant, D.⁴ Huang, T.⁵ Milligan, J.F.⁶ Matteucci, M.D.⁷ Wagner, R.W.⁸

28
- 0028915281
- (1995) Nucleic Acids Res. , vol.23 , pp. 1197-1203
- Bonham, M.A.¹ Brown, S.² Boyd, A.L.³ Brown, P.H.⁴ Bruckenstein, D.A.⁵ Hanvey, J.C.⁶ Thomson, S.A.⁷ Pipe, A.⁸ Hassman, F.⁹ Bisi, J.E.¹⁰

29
- 0031896629
- (1998) Antisense Nucleic Acid Drug Dev. , vol.8 , pp. 103-111
- Gee, J.E.¹ Robbins, I.² Van der Laan, A.C.³ Van Boom, J.H.⁴ Colombier, C.⁵ Leng, M.⁶ Raible, A.M.⁷ Nelson, J.S.⁸ Lebleu, B.⁹

30
- 0030057861
- (1996) Nucleic Acids Res. , vol.24 , pp. 2936-2941
- Flanagan, W.M.¹ Kothavale, A.² Wagner, R.W.³

31
- 0026621787
- (1981) Biotechnology , vol.24 , pp. 92-98
- Matteucci, M.D.¹ Caruthers, M.H.²

32
- 0023518718
- (1987) J. Am. Chem. Soc. , vol.109 , pp. 7845-7854
- Usman, N.¹ Ogilvie, K.K.² Jiang, M.-V.³ Cedergren, R.⁴

33
- 0029151591
- (1995) Nucleic Acids Res. , vol.23 , pp. 2677-2684
- Wincott, F.¹ DiRenzo, A.² Shaffer, C.³ Grimm, S.⁴ Tracz, D.⁵ Workman, C.⁶ Sweedler, D.⁷ Gonzalez, C.⁸ Scaringe, S.⁹ Usman, N.¹⁰

34
- 0000019472
- (1988) Nucleosides Nucleotides , vol.7 , pp. 779-782
- Stawinski, J.¹ Strömberg, R.² Thelin, M.³ Westman, E.⁴

35
- 0001606582
- Fasman, G. D., Ed.; CRC Press: Cleveland, OH
- (1975) Handbook of Biochemistry and Molecular Biology: Nucleic Acids, 3rd ed. , vol.1 , pp. 589
- Borer, P.N.¹

36
- 0001473762
- Fasman, G. D., Ed.; CRC Press: Cleveland, OH
- (1975) Handbook of Biochemistry and Molecular Biology: Nucleic Acids, 3rd ed. , vol.1 , pp. 597
- Richards, E.G.¹

37
- 0024804759
- (1989) Methods Enzymol. , vol.180 , pp. 304-325
- Puglisi, J.D.¹ Tinoco I., Jr.²

38
- 0025186882
- (1990) Biochemistry , vol.29 , pp. 278-285
- Longfellow, C.E.¹ Kierzek, R.² Turner, D.H.³

39
- 0029805937
- (1996) Biochemistry , vol.35 , pp. 14077-14089
- McDowell, J.A.¹ Turner, D.H.²

40
- 0000075467
- (1986) Proc. Natl. Acad. Sci. U.S.A. , vol.83 , pp. 9373-9377
- Freier, S.M.¹ Kierzek, R.² Jaeger, J.A.³ Sugimoto, N.⁴ Caruthers, M.H.⁵ Neilson, T.⁶ Turner, D.H.⁷

41
- 0030971891
- (1997) Biophys. Chem. , vol.64 , pp. 15-23
- Chaires, J.B.¹

42
- 0003737234
- John Wiley & Sons: New York
- (1977) Linear Regression Analysis
- Seber, G.A.F.¹

43
- 0003973174
- Richard D. Irwin, Inc.: Homewood, IL
- (1985) Applied Statistical Models, 2nd ed.
- Neter, J.¹ Wasserman, W.² Kutner, M.H.³

44
- 0003523585
- Wiley & Sons: New York
- (1975) Data Analysis for Scientists and Engineers
- Meyer, S.L.¹

45
- 0004249259
- Revised by Pitzer, K. S., Brewer, L.; McGraw-Hill: New York
- (1961) Thermodynamics, 2nd ed.
- Lewis, G.N.¹ Randall, M.²

46
- 0020674698
- (1983) Biochemistry , vol.22 , pp. 256-263
- Petersheim, M.¹ Turner, D.H.²

47
- 0022424620
- (1985) Biochemistry , vol.24 , pp. 4533-4539
- Freier, S.M.¹ Alkema, D.² Sinclair, A.³ Neilson, T.⁴ Turner, D.H.⁵

48
- 0033529318
- (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 7853-7858
- Chalikian, T.V.¹ Volker, J.² Plum, G.E.³ Breslauer, K.J.⁴

49
- 0003227563
- (1999) Biochemistry , vol.38 , pp. 8408-8422
- Holbrook, J.A.¹ Capp, M.W.² Saecker, R.M.³ Record M.T., Jr.⁴

50
- 0032902804
- (1999) Nat. Biotechnol. , vol.17 , pp. 48-52
- Flanagan, W.M.¹ Wagner, R.W.² Grant, D.³ Lin, K.Y.⁴ Matteucci, M.D.⁵

51
- 0025944267
- (1991) Crit. Rev. Biochem. Mol. Biol. , vol.26 , pp. 227-259
- Wetmur, J.G.¹

52
- 0032998464
- (1999) Bioinformatics , vol.15 , pp. 370-375
- Blake, R.D.¹ Bizzaro, J.D.² Blake, J.D.³ Delcourt, S.G.⁴ Knowles, J.⁵ Marx, K.A.⁶ SantaLucia J., Jr.⁷

53
- 0017880602
- (1978) Biopolymers , vol.17 , pp. 85-106
- Gray, D.M.¹ Hamilton, F.D.² Vaughan, M.R.³

54
- 84985665816
- (1981) Biopolymers , vol.20 , pp. 1337-1382
- Gray, D.M.¹ Liu, J.-J.² Ratliff, R.L.³ Allen, F.S.⁴

55
- 0027190862
- (1993) Biochemistry , vol.32 , pp. 4207-4215
- Salazar, M.¹ Fedoroff, O.Y.² Miller, J.M.³ Ribeiro, N.S.⁴ Reid, B.R.⁵

56
- 0028149364
- (1994) Nucleic Acids Res. , vol.22 , pp. 4326-4334
- Hung, S.H.¹ Yu, Q.² Gray, D.M.³ Ratliff, R.L.⁴

57
- 0028318228
- (1994) Biochemistry , vol.33 , pp. 5298-5304
- Ratmeyer, L.¹ Vinayak, R.² Zhong, Y.Y.³ Zon, G.⁴ Wilson, W.D.⁵

58
- 0029121625
- (1995) Biochemistry , vol.34 , pp. 10807-10815
- Lesnik, E.A.¹ Freier, S.M.²

59
- 0029820641
- (1996) Biochemistry , vol.24 , pp. 12538-12548
- Gyi, J.I.¹ Conn, G.L.² Lane, A.N.³ Brown, T.⁴

60
- 0027228277
- (1993) J. Med. Chem. , vol.36 , pp. 1923-1937
- Milligan, J.F.¹ Matteucci, M.D.² Martin, J.C.³

61
- 0031278019
- (1997) Pharmacol. Ther. , vol.76 , pp. 151-160
- Agrawal, S.¹ Iyer, R.P.²

62
- 0032004967
- (1998) Trends Biotechnol Sci. , vol.23 , pp. 45-50
- Branch, A.D.¹

63
- 0033990403
- (2000) Methods Enzymol. , vol.313 , pp. 3-45
- Crooke, S.T.¹

64
- 0023785594
- (1988) Annu. Rev. Biophys. Biophys. Chem. , vol.17 , pp. 167-192
- Turner, D.H.¹ Sugimoto, N.² Freier, S.M.³

65
- 0034194135
- (2000) Nucleic Acids Res. , vol.28 , pp. 1929-1934
- Bommarito, S.¹ Peyret, N.² SantaLucia J., Jr.³

66
- 0034654495
- (2000) J. Am. Chem. Soc. , vol.122 , pp. 2213-2222
- Guckian, K.M.¹ Schweitzer, B.A.² Ren, R.X.-F.³ Sheils, C.J.⁴ Tahmassebi, D.C.⁵ Kool, E.T.⁶

67
- 0000789168
- (1987) J. Am. Chem. Soc. , vol.109 , pp. 3783-3785
- Turner, D.H.¹ Sugimoto, N.² Kierzek, R.³ Dreiker, S.D.⁴

68
- 0022429804
- (1985) Nucleic Acids Res. , vol.13 , pp. 8927-8938
- Martin, F.H.¹ Castro, M.M.² Aboul-ela, F.³ Tinoco I., Jr.⁴

69
- 0022423486
- (1985) Nucleic Acids Res. , vol.13 , pp. 4811-4824
- Aboul-ela, F.¹ Koh, D.² Tinoco I., Jr.³ Martin, F.H.⁴

70
- 0023046290
- (1986) Nucleic Acids Res. , vol.14 , pp. 7727-7736
- Kawase, Y.¹ Iwai, S.² Inoue, H.³ Miura, K.⁴ Ohtsuka, E.⁵

71
- 0034718521
- (2000) Biochemistry , vol.39 , pp. 11748-11762
- Burkard, M.E.¹ Turner, D.H.²

72
- 0032753202
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 9503-9508
- Stofer, E.¹ Chipot, C.² Lavery, R.³

73
- 0019883234
- (1981) Biochemistry , vol.20 , pp. 1419-1426
- Freier, S.M.¹ Hill, K.O.² Dewey, T.G.³ Marky, L.A.⁴ Breslauer, K.J.⁵ Turner, D.H.⁶

74
- 0024729829
- (1989) Liq. Chromatogr. , vol.12 , pp. 2103-2116
- Valko, K.¹ Fellegbvari, I.² Sagi, J.³ Szemzo, A.J.⁴

75
- 0032841423
- (1999) Biopolymers , vol.50 , pp. 459-471
- Chalikian, T.V.¹ Volker, J.² Srinivasan, A.R.³ Olson, W.A.⁴ Plum, G.E.⁵ Breslauer, K.J.⁶

76
- 0029956116
- (1996) Biochemistry , vol.35 , pp. 8489-8494
- Egli, M.¹ Portmann, S.² Usman, N.³

77
- 0032578455
- (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 11538-11543
- Sokol, D.L.¹ Zhang, X.² Lu, P.³ Gewirtz, A.M.⁴

78
- 0033033430
- (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.4 , pp. 6171-6176
- Bonnet, G.¹ Tyagi, S.² Libchaber, A.³ Kramer, F.R.⁴

79
- 0032754283
- (1999) Anal. Chem. , vol.71 , pp. 5054-5059
- Liu, X.¹ Tan, W.²

80
- 0031554899
- (1997) Anal. Biochem. , vol.251 , pp. 270-279
- Healey, B.G.¹ Matson, R.S.² Walt, D.R.³

81
- 0032211032
- (1998) Nucleic Acids Res. , vol.26 , pp. 4975-4982
- Hacia, J.G.¹ Woski, S.A.² Fidanza, J.³ Edgemon, K.⁴ Hunt, N.⁵ McGall, G.⁶ Fodor, A.P.A.⁷ Collins, F.S.⁸

82
- 0033062362
- (1999) Mol. Biotechnol. , vol.11 , pp. 13-25
- Maldonado-Rodriguez, R.¹ Espinosa-Lara, M.² Loyola-Abitia, P.³ Beattie, W.G.⁴ Beattie, K.L.⁵

83
- 0033578928
- (1999) J. Mol. Biol. , vol.292 , pp. 251-262
- Gerry, N.P.¹ Witowski, N.E.² Day, J.³ Hammer, R.P.⁴ Barany, G.⁵ Barany, F.⁶

84
- 0033555355
- (1999) Nucleic Acids Res. , vol.27 , pp. 389-395
- Chen, D.¹ Yan, Z.² Cole, D.L.³ Srivatsa, G.S.⁴

85
- 0034695268
- (2000) Science , vol.287 , pp. 451-452
- Walt, D.R.¹

86
- 0004161838
- Cambridge University Press: Cambridge, England
- (1992) Numerical Recipes in C, 2nd ed.
- Press, W.H.¹ Teukolsky, S.A.² Vetterling, W.T.³ Flannery, B.P.⁴

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