Derivation of nearest-neighbor properties from data on nucleic acid oligomers. ii. thermodynamic parameters of DNA RNA hybrids and DNA duplexes

Biopolymers - Nucleic Acid Sciences Section

Volumn 42, Issue 7, 1997, Pages 795-810

  Gray, Donald M ^a  

^a UNIVERSITY OF TEXAS AT DALLAS   (United States)

Author keywords

Dna duplexes; Dna rna hybrids; Nearest neighbor properties; Nucleic acid oligomers; Thennodynamic parameters

Indexed keywords

DNA SEQUENCES; MATHEMATICAL MODELS; RNA; THERMODYNAMIC PROPERTIES;

NUCLEIC ACID OLIGOMERS;

OLIGOMERS;

DNA HYBRID; DOUBLE STRANDED DNA; NUCLEIC ACID; RNA;

NUCLEOTIDE SEQUENCE; OLIGOMERIZATION; REVIEW; RNA HYBRIDIZATION; STRUCTURE ACTIVITY RELATION; THERMODYNAMICS;

EID: 0031543297     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0282(199712)42:7<795::AID-BIP5>3.0.CO;2-O     Document Type: Article

References (19)

1. Press, W. H., Teukolsky, S. A., Vetterling, W. T. & Flannery, B. P. ( 1992) Numerical Recipes in C, 2nd ed., Cambridge University Press, New York, pp. 5970, 663-663.
2. Gray, D. M. (1997) Biopolymers, preceding paper.
3. Freier, S. M., Kierzek, R., Jaeger, J. A., Sugimoto, N., Caruthers, M. H., Neilson, T. & Turner, D. H. (1986) Proc. Natl. Acad. Sei. USA 83, 9373-9377.
4. Breslauer, K.J., Frank, R., Blöcker, H. & Marky, L. A. (1986) Proc. Natl. Acad. Sei. USA 83, 37463750.
5. SantaLucia, J., Jr., Allavvi, H. T. & Seneviratne, P. A. (1996) Biochemistry 35, 3555-3562.
6. Sugimoto, N., Nakano, S., Yoneyama, M. & Honda, K. (1996) Nucl. Acids Res. 24, 4501-4505.
7. Sugimoto, N., Nakano, S., Katoh, M., Matsumura, A., Nakamuta, H., Ohmichi, T., Yoneyama, M. & Sasaki, M. (1995) Biochemistry 34, 11211-11216.
8. Borer, P. N., Dengler, B., Tinoco, L, Jr. & Uhlenbeck, O. C. (1974) J. Mol. Biol. 86, 843-853.
9. Compton, L. A. & Johnson, W. C., Jr. ( 1986) Anal. Biochem. 155, 155-167.
10. Li, Y. & Agrawal, S. (1995) Biochemistry 34, 10056-10062.
11. Cantor, C. R. & Schimmel, P. R. ( 1980) Biophysical Chemistry, Part III, W. H. Freeman, San Francisco, ÇA, pp. 1197-1198.
12. Henry, E. R. & Hofrichter, J. (1992) Methods Enzymol. 210, 129-192.
13. Allawi, H. T. & SantaLucia, J., Jr. (1997) Biochemistry, 36, 10581-10594.
14. Williams, D. H., Cox, J. P. L., Doig, A. J., Gardner, M., Gerhard, U., Kaye, P. T., Lal, A. R., Nicholls, I.A., Salter, C.J. & Mitchell, R. C. (1991) J. Am. Chem. Soc. 113, 7020-7030.
15. Roberts, R.W. & Crothers, D.M. (1992) Science 258, 1463-1466.
16. Hung, S.-H., Yu, Q., Gray, D.M. & Ratliff, R. L. (1994) Nucleic Acids Res. 22, 4326-4334.
17. Ratmeyer, L., Vinayak, R., Zhong, Y. Y., Zon, G. & Wilson, W. D. ( 1994) Biochemistry 33,5298-5304.
18. Lesnik, E. A. & Freier, S. M. (1995) Biochemistry 34, 10807-10815.
19. Gyi, J. L, Conn, G. L., Lane, A. N. & Brown, T. (1996) Biochemistry 35, 12538-12548.