The replication-recombination connection: Insights from genomics

Current Opinion in Microbiology

Volumn 4, Issue 5, 2001, Pages 595-601

  Gruss, Alexandra ^a   Michel, Bénédicte ^a  

^a CEMAGREF   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DNA BASE COMPOSITION; DNA METABOLISM; DNA RECOMBINATION; DNA REPAIR; DNA REPLICATION; DNA STRUCTURE; GENOME; PROTEIN CONFORMATION; PROTEIN DNA INTERACTION; PROTEIN PROTEIN INTERACTION; PROTEIN TRANSPORT; REVIEW; TANDEM REPEAT;

EID: 0034786987     PISSN: 13695274     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1369-5274(00)00256-3     Document Type: Review

References (51)

1. RuvAB acts at arrested replication forks
2. Collapse and repair of replication forks in Escherichia coli
3. Replication fork arrest and DNA recombination
4. Rescue of arrested replication forks by homologous recombination
5. Impairment of lagging strand synthesis triggers the formation of a RuvABC substrate at replication forks
6. RuvABC-dependent double-strand breaks in dnaBts mutants require recA
7. Modulation of RNA polymerase by (P)ppGpp reveals a RecG-dependent mechanism for replication fork progression
8. Role of PriA in replication fork reactivation in Escherichia coli
9. PriA-directed replication fork restart in Escherichia coli
10. Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes
11. Strand compositional asymmetry in bacterial and large viral genomes
12. Universal replication biases in bacteria
13. The contributions of replication orientation, gene direction, and signal sequences to base-composition asymmetries in bacterial genomes
14. Replication orientation affects the rate and direction of bacterial gene evolution
15. Unequal fidelity of leading strand and lagging strand DNA replication on the Escherichia coli chromosome
16. DNA replication: One strand may be more equal
17. SOS mutator activity: Unequal mutagenesis on leading and lagging strands
18. Skewed oligomers and origins of replication
19. Dynamic organization of chromosomal DNA in Escherichia coli
20. Functional polarization of the Escherichia coli chromosome terminus: The dif site acts in chromosome dimer resolution only when located between long stretches of opposite polarity
21. Polarization of the Escherichia coli chromosome. A view from the terminus
22. A tale of two genomes: Resolution of dimeric chromosomes in Escherichia coli and Bacillus subtilis
23. Identification and characterization of the dif site from Bacillus subtilis
24. Conservation of xer site-specific recombination genes in bacteria
25. Restriction of the activity recombination site dif to a small zone of the Escherichia coli chromosome
26. Interplay between recombination, cell division and chromosome structure during chromosome dimer resolution in Escherichia coli
27. Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda
28. Characteristics of Chi distribution on different bacterial genomes
29. Genomics, Chi sites and codons: 'Islands of preferred DNA pairing' are oceans of ORFs
30. Codon usage can explain GT-rich islands surrounding Chi sites on the Escherichia coli genome
31. A 7-base-pair sequence protects DNA from exonucleolytic degradation in Lactococcus lactis
32. The Bacillus subtilis AddAB helicase/nuclease is regulated by its cognate Chi sequence in vitro
33. Identification of the Chi site of Haemophilus influenzae as several sequences related to the Escherichia coli Chi site
34. A tandem repeats database for bacterial genomes: Application to the genotyping of Yersinia pestis and Bacillus anthracis
35. Prediction, identification, and artificial selection of DNA rearrangements in Rhizobium: Toward a natural genomic design
36. The β clamp targets DNA polymerase IV to DNA and strongly increases its processivity
37. Replication mutations differentially enhance RecA-dependent and RecA- independent recombination between tandem repeats in Bacillus subtilis
38. A case for sliding SeqA tracts at anchored replication forks during Escherichia coli chromosome replication and segregation
39. Localization of bacterial DNA polymerase: Evidence for a factory model of replication
40. Movement of replicating DNA through a stationary replisome
41. Genome rearrangement by replication directed translocation
42. The preference for GT-rich DNA by the yeast Rad51 protein defines a set of universal pairing sequences
43. Cleavage of holliday junctions by the Escherichia coli RuvABC complex
44. The role of the zinc motif in sequence recognition by DNA primases
45. RecR is a zinc metalloprotein from Bacillus subtilis 168
46. 2+ stimulation of mutant PriA helicase and primosome assembly activities
47. Efficient folding of proteins with multiple disulfide bonds in the Escherichia coli cytoplasm
48. A single nuclease active site of the Escherichia coli RecBCD enzyme catalyzes single-stranded DNA degradation in both directions
49. Distinctive features of homologous recombination in an 'old' microorganism, Lactococcus lactis
50. In vivo evidence for two active nuclease motifs in double strand break repair enzyme RexAB of Lactococcus lactis
51. Orientation specificity of the Lactococcus lactis Chi site