RecR is a zinc metalloprotein from Bacillus subtilis 168

Molecular Microbiology

Volumn 23, Issue 4, 1997, Pages 639-647

  Ayora, Silvia ^a   Stiege, Asita C ^b   Alonso, Juan C ^a  

^a CSIC   (Spain)

^b MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; METALLOPROTEIN; ZINC FINGER PROTEIN;

ARTICLE; BACILLUS SUBTILIS; METAL BINDING; MUTANT; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FAMILY;

BACILLUS SUBTILIS;

EID: 0031032493     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.1997.2431611.x     Document Type: Article

References (40)

1. Alonso, J.C., Tailor, R.H., and Lüder, G. (1988) Characterization of recombination-deficient mutants of Bacillus subtilis. J Bacteriol 170: 3001-3007.
2. Alonso, J.C., Shirahige, K., and Ogasawara, N. (1990) Molecular cloning, genetic characterization and DNA sequence analysis of the recM region of Bacillus subtilis. Nucl Acids Res 18: 6771-6777.
3. Alonso, J.C., Stiege, A.C., Dobrinski, B., and Lurz, R. (1993a) Purification and properties of the RecR protein from Bacillus subtilis 168. J Biol Chem 268: 1424-1429.
4. Alonso, J.C., Stiege, A.C., and Lüder, G. (1993b) Genetic recombination in Bacillus subtilis 168: effect of recN, recF, recH and addAB mutations on DNA repair and recombination. Mol Gen Genet 239: 129-136.
5. Alonso, J.C., Ayora, S., and Rojo, F. (1996) Recombinación Genética en Bacillus subtilis. In Microbiología y Genética Molecular. Casadesús J. (ed.). Huelva: Publicaciones Universidad de Huelva, pp. 229-240.
6. Ayora, S., Stiege, A.S., Lurz, R., and Alonso, J.C. (1996) Bacillus subtilis 168 RecR protein-DNA complexes visualized as looped structures. Mol Gen Genet, in press.
7. Bailley, V., Lamb, J., Sung, P., Prakash, S., and Prakash, L. (1995) Specific complex formation between Rad6 and Rad18: a potential mechanism for targeting Rad6 ubiquitinconjugating activity to DNA damage sites. Genes Dev 8: 811-820.
8. Berg, J.M., and Shi, Y. (1996) The galvanization of biology: a growing appreciation for the roles of zinc. Science 271: 1081-1085.
9. Burns, J.L., Guzder, S.N., Sung, P., Prokash, S., and Prakash, L. (1996) An affinity of human replication protein A for ultraviolet-damaged DNA. Implications for damage recognition in nucleotide excision repair. J Biol Chem 271: 11607-11610.
10. Dodson, M.L., Schrock, III, R.D., and Lloyd, R.S. (1993) Evidence for an imino intermediate in the endonuclease V reaction. Biochemistry 32: 8284-8290.
11. Doherty, A.J., Serpell, L.C., and Ponting, C.P. (1996) The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA. Nucl Acids Res 24: 2488-2497.
12. Friedberg, E.C., Walker, G.C., and Siede, W. (1995) DNA repair by reversal of damage. In DNA repair and mutagenesis. 1st edn. Washington, DC: American Society for Microbiology Press, pp. 91-133.
13. Guzder, S.N., Sung, P., Prakash, L., and Prakash, S. (1993) Yeast DNA-repair gene RAD14 encodes a zinc metalloprotein with affinity for ultraviolet-damaged DNA. Proc Natl Acad Sci USA 90: 5433-5437.
14. Habeeb, A.F.S.A. (1972) Reaction of protein sulphhydryl groups with Ellman's reagent. Meth Enzymol 25: 457-464.
15. 2+ release from Escherichia coli aspartate transcarbamoylase. J Biol Chem 259: 14793-14803.
16. Iglesias, A., and Trautner, T.A. (1983) Plasmid transformation in Bacillus subtilis: symmetry of gene conversion in transformation with a hybrid plasmid containing chromosomal DNA. Mol Gen Genet 189: 73-76.
17. Imoto, T., and Yamada, H. (1989) Chemical modification. In Protein Function. A Practical Approach. Creighton, T.E. (ed.). Oxford: IRL Press at Oxford University Press, pp 247-277.
18. Kuo, C.-F., McRee, D.E., Fisher, C.L., O'Handly, S.F., Cunningham, R.P., and Tainer, J.A. (1992) Atomic structure of the DNA repair [4Fe-4S] enzyme endonuclease III. Science 258: 434-440.
19. Lindahl, T. (1993) Instability and decay of the primary structure of DNA. Nature 362: 709-715.
20. Lindahl, T., Satoh, M.S., Poirier, G.G., and Kungland, A. (1995) Post-translational modification of poly(ADP-ribose) polymerase induced by DNA strand breaks. Trends Biochem Sci 20: 407-412.
21. Matsunaga, T., Park, C.-H., Bessho, T., Mu, D., and Sancar, A. (1996) Replication protein A confers structure-specific endonuclease activities to the XPF-ERCC1 and XPG subunits of human DNA repair excision nuclease. J Biol Chem 271: 11047-11050.
22. Morita, E.H., Ohkubo, T., Kuraoka, I., Shirakawa, M., Tanaka, K., and Morikawa, K. (1996) Implications of the zinc-finger motif found in the DNA-binding domain of the human XPA protein. Genes Cells 1: 437-442.
23. Myers, L.C., Terranova, M.P., Nash, H.M., Markus, M.A., and Verdine, G.L. (1992) Zinc binding by methylation signaling domain of the Escherichia coli Ada protein. Biochemistry 31:4541-4547.
24. Myers, L.C., Terranova, M.P., Ferentz, A.E., Wagner, G., and Verdine, G.L. (1993) Repair of DNA methylphosphotriesters through a metalloactivated cysteine. Science 261: 1164-1167.
25. Navaratnam, S., Myles, G.M., Strange, R.W., and Sancar, A. (1989) Evidence from extended X-ray absorption fine structure and site-specific mutagenesis for zinc fingers in UvrA protein of Escherichia coli. J Biol Chem 264: 16067-16071.
26. O'Connor, T.R., Graves, R.J., De Murcia, G., Castaing, B., and Laval, J. (1993) Fpg protein of Escherichia coli is a zinc finger protein whose cysteine residues have a structural and/or functional role. J Biol Chem 268: 9063-9070.
27. Porath, J., Carlsson, J., Olsson, I., and Belfrage, G. (1975) Metal chelate affinity chromatography, a new approach to protein fractionation. Nature 258: 598-599
28. Robins, P., Jones, C.J., Biggerstaff, M. Lindahl, T., and Wood, R.D. (1991) Complementation of DNA repair in xeroderma pigmentosum group A cell extract by a protein with affinity for damaged DNA. EMBO J 10: 3910-3921.
29. Sambrook, J., Maniatis, T., and Fritsch, E.F. (1989). Molecular Cloning: A Laboratory Manual. 2nd edn. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
30. Schwabe, J.W.R., and Klug, A. (1994) Zinc mining for protein domains. Nature Struct Biol 1: 345-348.
31. Studier, F.W. (1991) Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system. J Mol Biol 219: 37-44.
32. Tainer, J.A., Thayer, M.M., and Cunningham, R.P. (1995) DNA repair proteins. Curr Op Struct Biol 5: 20-26.
33. Tchou, J., Michaels, M.L., Miller, J.H., and Grollman, A.P. (1993) Function of the zinc finger in Escherichia coli Fpg protein. J Biol Chem 268: 26738-26744.
34. Thayer, M.M., Ahern, H., Xing, D., Cunningham, R.P., and Tainer, J.A. (1995) Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure. EMBO J 14: 4108-4120.
35. Umezu, K., and Kolodner, R.D. (1994) Protein interactions in genetic recombination in Escherichia coli. Interactions involving RecO and RecR overcome the inhibition of RecA by single-stranded DNA-binding protein. J Biol Chem 269: 30005-30013.
36. Vallee, B.L., and Auld, D.S. (1990) Zinc co-ordination, function, and structure of zinc enzymes and other proteins. Biochemistry 29: 5647-5659.
37. Wang, J., and Grossman, L. (1993) Mutations in the helixturn-helix motif of the Escherichia coli UvrA protein eliminate its specificity for UV-damaged DNA. J Biol Chem 268: 5323-5331.
38. Webb, B.L., Cox, M.M., and Inman, R.B. (1995) An interaction between the Escherichia coli RecF and RecR proteins dependent on ATP and double-stranded DNA. J Biol Chem 270: 31397-31404.
39. Yanisch-Perron, C., Vieira, J., and Messing, J. (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33: 103-119.
40. Zhou, Z., and Elledge, S.J. (1993) Dun1 encodes a protein kinase that controls the DNA damage response in yeast. Cell 75: 1119-1127.