PriA-directed replication fork restart in Escherichia coli

Trends in Biochemical Sciences

Volumn 25, Issue 4, 2000, Pages 185-189

  Marians, Kenneth J ^a  

^a Mem Sloan Kettering Cancer C   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HELICASE; PRIA PROTEIN; RECA PROTEIN; UNCLASSIFIED DRUG;

CELL SURVIVAL; CHROMOSOME; DNA DAMAGE; DNA PROTEIN COMPLEX; DNA REPLICATION; DNA TEMPLATE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; REVIEW;

CHROMOSOMES, BACTERIAL; DNA REPLICATION; DNA-BINDING PROTEINS; ESCHERICHIA COLI; PHENOTYPE; REPLICATION PROTEIN A;

ESCHERICHIA COLI;

EID: 0034177963     PISSN: 09680004     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0968-0004(00)01565-6     Document Type: Review

References (52)

1. Helmstetter C.E. Timing of synthetic activities in the cell cycle. Neidhardt F.C.et al. Escherichia coli and Salmonella typhimurium. 1987;1594-1605 American Society for Microbiology.
2. LeBowitz J.H., McMacken R. The Escherichia coli dnaB replication protein is a DNA helicase. J. Biol. Chem. 261:1986;4738-4748.
3. Wickner S. DNA or RNA priming of bacteriophage G4 DNA synthesis by Escherichia coli dnaG protein. Proc. Natl. Acad. Sci. U. S. A. 74:1977;2815-2819.
4. Bouché J-P. dnaG gene product, a rifampicin-resistant RNA polymerase, initiates the conversion of a single-stranded coliphage DNA to its duplex replicative form. J. Biol. Chem. 250:1975;5995-6001.
5. Kelman Z., O'Donnell M. DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine. Annu. Rev. Biochem. 64:1995;171-200.
6. Wickner S., Hurwitz J. Interaction of Escherichia coli dnaB and dnaC(D) gene products in vitro. Proc. Natl. Acad. Sci. U. S. A. 72:1975;921-925.
7. Ng J.Y., Marians K.J. The ordered assembly of the φX174-type primosome. I. Isolation and identification of intermediate protein-DNA complexes. J. Biol. Chem. 271:1996;15642-15648.
8. Mok M., Marians K.J. The Escherichia coli preprimosome and DNA B helicase can form replication forks that move at the same rate. J. Biol. Chem. 262:1987;16644-16654.
9. Hanawalt P.C. The UV sensitivity of bacteria. its relation to the DNA replication cycle Photochem. Photobiol. 5:1966;1-12.
10. Skalka A. A replicator's view of recombination (and repair). Grell R.F. Mechanisms in Recombination. 1974;421-432 Plenum Press.
11. Cox M.M. Recombinational DNA repair in bacteria and the RecA protein. Prog. Nucleic Acids Res. Mol. Biol. 63:1999;311-366.
12. Marians K.J. PriA. at the crossroads of DNA replication and recombination Prog. Nucleic Acids Res. Mol. Biol. 63:1999;39-67.
13. Kogoma T. Stable DNA replication. interplay between DNA replication, homologous recombination, and transcription Microbiol. Mol. Biol. Rev. 61:1997;212-238.
14. Kuzminov A. Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda. Microbiol. Mol. Biol. Rev. 63:1999;751-813.
15. Smith G.R. Homologous recombination in prokaryotes. Microbiol. Rev. 52:1988;1-28.
16. Marians K.J. Prokaryotic DNA replication. Annu. Rev. Biochem. 61:1992;673-719.
17. Schekman R.et al. Ten proteins required for conversion of φX174 single-stranded DNA to duplex form in vitro. Resolution and reconstitution. J. Biol. Chem. 250:1975;5859-5865.
18. Wickner S., Hurwitz J. Conversion of φX174 viral DNA to double-stranded form by purified Escherichia coli proteins. Proc. Natl. Acad. Sci. U. S. A. 71:1974;4120-4124.
19. Minden J.S., Marians K.J. Replication of pBR322 DNA in vitro with purified proteins. Requirement for topoisomerase I in the maintenance of template specificity. J. Biol. Chem. 260:1985;9316-9325.
20. Wu C.A.et al. Coordinated leading- and lagging-strand synthesis at the Escherichia coli DNA replication fork. I. Multiple effectors act to modulate Okazaki fragment size. J. Biol. Chem. 267:1992;4030-4044.
21. Shlomai J.M., Kornberg A. An Escherichia coli replication protein that recognizes a unique sequence within a hairpin region in φX174 DNA. Proc. Natl. Acad. Sci. U. S. A. 77:1980;799-803.
22. Marians K.J. Enzymology of DNA replication in prokaryotes. Crit. Rev. Biochem. 17:1984;153-215.
23. Lee M.S., Marians K.J. Escherichia coli replication factor Y, a component of the primosome, can act as a DNA helicase. Proc. Natl. Acad. Sci. U. S. A. 84:1987;8345-8349.
24. Lasken R.S., Kornberg A. The primosomal protein n′ of Escherichia coli is a DNA helicase. J. Biol. Chem. 263:1988;5512-5518.
25. Kaguni J.M., Kornberg A. Replication initiated at the origin (oriC) of the E. coli chromosome reconstituted with purified enzymes. Cell. 38:1984;183-190.
26. Nurse P.et al. Inactivation of the Escherichia coli PriA DNA replication protein induces the SOS response. J. Bacteriol. 173:1991;6686-6693.
27. Lee E.H., Kornberg A. Replication deficiencies in priA mutants of Escherichia coli lacking the primosomal replication n′ protein. Proc. Natl. Acad. Sci. U. S. A. 88:1991;3029-3032.
28. Zavitz K.H., Marians K.J. Dissecting the functional role of PriA protein-catalysed primosome assembly in Escherichia coli DNA replication. Mol. Microbiol. 5:1991;2869-2873.
29. Seufert W., Messer W. Initiation of Escherichia coli minichromosome replication at oriC and at protein n′ recognition sites. Two modes for initiating DNA synthesis in vitro. EMBO J. 5:1986;3401-3406.
30. Masai H.et al. Escherichia coli PriA protein is essential for inducible and constitutive stable DNA replication. EMBO J. 13:1994;5338-5345.
31. Kogoma T.et al. The DNA replication priming protein, PriA, is required for homologous recombination and double-strand break repair. J. Bacteriol. 178:1996;1258-1264.
32. Sandler S.J.et al. Differential suppression of priA2::kan phenotypes in Escherichia coli K-12 by mutations in priA, lexA, and dnaC. Genetics. 143:1996;5-13.
33. Zavitz K.H., Marians K.J. ATPase-deficient mutants of the Escherichia coli DNA replication protein PriA are capable of catalysing the assembly of active primosomes. J. Biol. Chem. 267:1992;6933-6940.
34. McGlynn P.et al. The DNA replication protein PriA and the recombination protein RecG bind D-loops. J. Mol. Biol. 270:1997;212-221.
35. Nurse P.et al. Two modes of PriA binding to DNA. J. Biol. Chem. 274:1999;25026-25032.
36. Liu J.et al. Replication fork assembly at recombination intermediates is required for bacterial growth. Proc. Natl. Acad. Sci. U. S. A. 96:1999;3552-3555.
37. Jones J.M., Nakai H. The φX174-type primosome promotes replisome assembly at the site of recombination in bacteriophage Mu transposition. EMBO J. 16:1997;6886-6895.
38. Courcelle J.et al. Recovery of DNA replication in UV-irradiated Escherichia coli requires both excision repair and RecF protein function. J. Bacteriol. 181:1999;916-922.
39. Capaldo F.N.et al. Analysis of the growth of recombination-deficient strains of Escherichia coli K-12. J. Bacteriol. 118:1971;242-249.
40. Learn B.A.et al. Cryptic single-stranded-DNA binding activities of the phage lambda P and Escherichia coli DnaC replication initiation proteins facilitate the transfer of E. coli DnaB helicase onto DNA. Proc. Natl. Acad. Sci. U.S.A. 94:1997;1154-1159.
41. Fuller R.S., Kornberg A. Purified dnaA protein in initiation of replication at the Escherichia coli chromosomal origin of replication. Proc. Natl. Acad. Sci. U.S.A. 80:1983;5817-5821.
42. Marszalek J., Kaguni J.M. DnaA protein directs the binding of DnaB protein in initiation of DNA replication in Escherichia coli. J. Biol. Chem. 269:1994;4883-4890.
43. Hiasa H., Marians K.J. Primase couples leading- and lagging-strand DNA synthesis from oriC. J. Biol. Chem. 269:1994;6058-6063.
44. Kim S.et al. Coupling of a replicative polymerase and helicase. a τ-DnaB interaction mediates rapid replication fork movement Cell. 84:1996;643-650.
45. Kim S.et al. τ protects β in the leading-strand polymerase complex at the replication fork. J. Biol. Chem. 271:1996;4315-4318.
46. Yuzhakov A.et al. Replisome assembly reveals the basis for asymmetric function in leading and lagging strand replication. Cell. 86:1996;877-886.
47. Xu, L. and Marians, K.J. Purification and characterization of DnaC810: a primosomal protein capable of bypassing PriA function. J. Biol. Chem. (in press).
48. Sandler S.J.et al. dnaC mutations suppress defects in DNA replication- and recombination-associated functions in priB and priC double mutants in Escherichia coli K-12. Mol. Microbiol. 34:1999;91-101.
49. Seigneur M.et al. RuvAB acts at arrested replication forks. Cell. 95:1998;419-430.
50. Scott J.F.et al. A mechanism of duplex DNA replication revealed by enzymatic studies of phage φX174. catalytic strand separation in advance of replication Proc. Natl. Acad. Sci. U. S. A. 74:1977;193-197.
51. Sandler S.J., Marians K.J. Role of PriA in replication fork reactivation in Escherichia coli. J. Bacteriol. 182:2000;9-13.
52. Haber J.E. DNA recombination. the replication connection Trends Biochem. Sci. 24:1999;271-275.