RNA tertiary folding monitored by fluorescence of covalently attached pyrene

Biochemistry

Volumn 38, Issue 43, 1999, Pages 14224-14237

  Silverman, Scott K ^a   Cech, Thomas R ^a  

^a UNIVERSITY OF COLORADO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM ION; DIVALENT CATION; MAGNESIUM ION; OLIGONUCLEOTIDE; PYRENE; RNA; STRONTIUM;

ARTICLE; CHROMATOPHORE; CONTROLLED STUDY; COVALENT BOND; CRYSTAL STRUCTURE; FLUORESCENCE; NONHUMAN; PRIORITY JOURNAL; RNA STRUCTURE; TETRAHYMENA;

ANIMALS; CLONING, MOLECULAR; FLUORESCENT DYES; INTRONS; KINETICS; MAGNESIUM; NUCLEIC ACID CONFORMATION; PYRENES; RNA, CATALYTIC; RNA, PROTOZOAN; SPECTROMETRY, FLUORESCENCE; SUBSTRATE SPECIFICITY; TETRAHYMENA;

TETRAHYMENA;

EID: 0033607150     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991333f     Document Type: Article

References (59)

1. Banerjee, A. R., and Turner, D. H. (1995) Biochemistry 34, 6504-6512.
2. Zarrinkar, P. P., and Williamson, J. R. (1994) Science 265, 918-924.
3. Zarrinkar, P. P., Wang, J., and Williamson, J. R. (1996) RNA 2, 564-573.
4. Treiber, D. K., Rook, M. S., Zarrinkar, P. P., and Williamson, J. R. (1998) Science 279, 1943-1946.
5. Downs, W. D., and Cech, T. R. (1996) RNA 2, 718-732.
6. Sclavi, B., Sullivan, M., Chance, M. R., Brenowitz, M., and Woodson, S. A. (1998) Science 279, 1940-1943.
7. Cole, P. E., and Crothers, D. M. (1972) Biochemistry 11, 4368-4374.
8. Maglott, E. J., and Glick, G. D. (1997) Nucleic Acids Res. 25, 3297-3301.
9. Maglott, E. J., Deo, S. S., Przykorska, A., and Glick, G. D. (1998) Biochemistry 37, 16349-16359.
10. Eftink, M. R. (1994) Biophys. J. 66, 482-501.
11. Chen, Y., and Barkley, M. D. (1998) Biochemistry 37, 9976-9982.
12. Eftink, M. (1997) Methods Enzymol. 278, 221-257.
13. Tuschl, T., Gohlke, C., Jovin, T. M., Westhof, E., and Eckstein, F. (1994) Science 266, 785-789.
14. Bassi, G. S., Murchie, A. I. H., Walter, F., Clegg, R. M., and Lilley, D. M. J. (1997) EMBO J. 16, 7481-7489.
15. Perkins, T. A., Wolf, D. E., and Goodchild, J. (1996) Biochemistry 35, 16370-16377.
16. Walter, N. G., Hampel, K. J., Brown, K. M., and Burke, J. M. (1998) EMBO J. 17, 2378-2391.
17. Walter, N. G., Burke, J. M., and Millar, D. P. (1999) Nat. Struct. Biol. 6, 544-549.
18. Turner, D. H., Li, Y., Fountain, M., Profenno, L., and Bevilacqua, P. C. (1996) in Nucleic Acids in Molecular Biology (Eckstein, F., and Lilley, D. M. J., Eds.) Vol. 10, pp 19-32, Springer-Verlag, Berlin.
19. Bevilacqua, P. C., Kierzek, R., Johnson, K. A., and Turner, D. H. (1992) Science 258, 1355-1358.
20. Bevilacqua, P. C., Sugimoto, N., and Turner, D. H. (1996) Biochemistry 35, 648-658.
21. Walter, N. G., and Burke, J. M. (1997) RNA 3, 392-404.
22. Pieken, W. A., Olsen, D. B., Benseler, F., Aurup, H., and Eckstein, F. (1991) Science 253, 314-317.
23. Heidenreich, O., Pieken, W., and Eckstein, F. (1993) FASEB J. 7, 90-96.
24. Heidenreich, O., Benseler, F., Fahrenholz, A., and Eckstein, F. (1994) J. Biol. Chem. 269, 2131-2138.
25. Qin, P. Z., and Pyle, A. M. (1997) Biochemistry 36, 4718-4730.
26. Kierzek, R., Li, Y., Turner, D. H., and Bevilacqua, P. C. (1993) J. Am. Chem. Soc. 115, 4985-4992.
27. Cate, J. H., Gooding, A. R., Podell, E., Zhou, K., Golden, B. L., Kundrot, C. E., Cech, T. R., and Doudna, J. A. (1996) Science 273, 1678-1685.
28. Laggerbauer, B., Murphy, F. L., and Cech, T. R. (1994) EMBO J. 13, 2669-2676.
29. Silverman, S. K., and Cech, T. R. (1999) Biochemistry 38, 8691-8702.
30. Cate, J. H., Hanna, R. L., and Doudna, J. A. (1997) Nat. Struct. Biol. 4, 553-558.
31. Grosshans, C. A., and Cech, T. R. (1991) Nucleic Acids Res. 19, 3875-3880.
32. Murphy, F. L., and Cech, T. R. (1993) Biochemistry 32, 5291-5300.
33. Sigurdsson, S. T., and Eckstein, F. (1996) Nucleic Acids Res. 24, 3129-3133.
34. Cohen, S. B., and Cech, T. R. (1997) J. Am. Chem. Soc. 119, 6259-6268.
35. Hendrix, C., Devreese, B., Rozenski, J., Van Aerschot, A., De Bruyn, A., Van Beeumen, J., and Herdewijn, P. (1995) Nucleic Acids Res. 23, 51-57.
36. Matulic-Adamic, J., Beigelman, L., Dudycz, L. W., Gonzalez, C., and Usman, N. (1995) Bioorg. Med. Chem. Lett. 5, 2721-2724.
37. Moore, M. J., and Sharp, P. A. (1992) Science 256, 992-997.
38. Murphy, F. L., and Cech, T. R. (1994) J. Mol. Biol. 236, 49-63.
39. Celander, D. W., and Cech, T. R. (1991) Science 251, 401-407.
40. Grosshans, C. A., and Cech, T. R. (1989) Biochemistry 28, 6888-6894.
41. Szewczak, A. A., and Cech, T. R. (1997) RNA 3, 838-849.
42. Uhlenbeck, O. C. (1995) RNA 1, 4-6.
43. Walstrum, S. A., and Uhlenbeck, O. C. (1990) Biochemistry 29, 10573-10576.
44. Lee, H., Hinz, M., Stezowski, J. J., and Harvey, R. G. (1990) Tetrahedron Lett. 31, 6773-6776.
45. Telser, J., Cruickshank, K. A., Morrison, L. E., and Netzel, T. L. (1989) J. Am. Chem. Soc. 111, 6966-6976.
46. Roget, A., Bazin, H., and Teoule, R. (1989) Nucleic Acids Res. 17, 7643-7651.
47. Allerson, C. R., Chen, S. L., and Verdine, G. L. (1997) J. Am. Chem. Soc. 119, 7423-7433.
48. Fidanza, J. A., and McLaughlin, L. W. (1992) J. Org. Chem. 57, 2340-2346.
49. Ozaki, H., and McLaughlin, L. W. (1992) Nucleic Acids Res. 20, 5205-5214.
50. Musier-Forsyth, K., and Schimmel, P. (1994) Biochemistry 33, 773-779.
51. Manoharan, M., Guinosso, C. J., and Cook, P. D. (1991) Tetrahedron Lett. 32, 7171-7174.
52. Yamana, K., Ohashi, Y., Nunota, K., Kitamura, M., Nakano, H., Sangen, O., and Shimidzu, T. (1991) Tetrahedron Lett. 32, 6347-6350.
53. Yamana, K., Aota, R., and Nakano, H. (1995) Tetrahedron Lett. 36, 8427-8430.
54. Manning, G. S. (1978) Q. Rev. Biophys. 11, 179-246.
55. Cole, P. E., Yang, S. K., and Crothers, D. M. (1972) Biochemistry 11, 4358-4368.
56. Manoharan, M., Tivel, K. L., Zhao, M., Nafisi, K., and Netzel, T. L. (1995) J. Phys. Chem. 99, 17461-17472.
57. Netzel, T. L., Zhao, M., Nafisi, K., Headrick, J., Sigman, M. S., and Eaton, B. E. (1995) J. Am. Chem. Soc. 117, 9119-9128.
58. Creamer, T. P., Srinivasan, R., and Rose, G. D. (1995) Biochemistry 34, 16245-16250.
59. Pan, T., and Uhlenbeck, O. C. (1993) Gene 125, 111-114.