A mechanistic framework for the second step of splicing catalyzed by the Tetrahymena ribozyme

Biochemistry

Volumn 35, Issue 2, 1996, Pages 648-658

  Bevilacqua, Philip C ^a,c   Sugimoto, Naoki ^b,c   Turner, Douglas H ^c  

^a UNIVERSITY OF COLORADO   (United States)

^b KONAN UNIVERSITY   (Japan)

^c UNIVERSITY OF ROCHESTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTOZOAL PROTEIN; RIBOZYME;

ARTICLE; CATALYSIS; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME KINETICS; ENZYME MECHANISM; MICHAELIS MENTEN KINETICS; NONHUMAN; PRIORITY JOURNAL; TETRAHYMENA THERMOPHILA;

ANIMALS; BASE SEQUENCE; BINDING SITES; EXONS; KINETICS; MAGNESIUM; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RNA SPLICING; RNA, CATALYTIC; RNA, PROTOZOAN; TETRAHYMENA THERMOPHILA;

TETRAHYMENA; TETRAHYMENA THERMOPHILA;

EID: 0030065737     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi951962z     Document Type: Article

References (43)

1. Been, M. D., & Cech, T. R. (1987) Cell 50, 951-961.
2. Bevilacqua, P. C. (1993) Ph.D. Thesis, University of Rochester, Rochester, NY.
3. Bevilacqua, P. C., & Turner, D. H. (1991) Biochemistry 30, 10632-10640.
4. Bevilacqua, P. C., Kierzek, R., Johnson, K. A., & Turner, D. H. (1992) Science 258, 1355-1358.
5. Bevilacqua, P. C., Johnson, K. A., & Turner, D. H. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 8357-8361.
6. Bevilacqua, P. C., Li, Y., & Turner, D. H. (1994) Biochemistry 33, 11340-11348.
7. Bick, H. (1972) Ciliated Protozoa, p 74, World Health Organization, Geneva.
8. Borer, P. N. (1975) in Handbook of Biochemistry and Molecular Biology: Nucleic Acids (Fasman G. D., Ed.) 3rd ed., Vol. I, p 597, CRC Press, Cleveland, OH.
9. Burke, J. M. (1989) FEBS Lett. 250, 129-133.
10. Burke, J. M., Esherick, J. S., Burfeind, W. R., & King, J. L. (1990) Nature 344, 80-82.
11. Cech, T. R. (1990) Annu. Rev. Biochem. 59, 543-568.
12. Cech, T. R., Herschlag, D., Piccirilli, J. A., & Pyle, A. M. (1992) J. Biol. Chem. 267, 17479-17482.
13. Cech, T. R., Damberger, S. H., & Gutell, R. R. (1994) Nature Struct. Biol. 1, 273-280.
14. Celander, D. W., & Cech, T. R. (1991) Science 251, 401-407.
15. Christian, E. L., & Yarus, M. (1993) Biochemistry 32, 4475-4480.
16. Fersht, A. (1985) Enzyme Structure and Mechanism, 2nd ed., W. H. Freeman, New York.
17. Herschlag, D. (1992) Biochemistry 31, 1386-1399.
18. Herschlag, D., & Cech, T. R. (1990) Biochemistry 29, 10159-10171.
19. Herschlag, D., & Khosla, M. (1994) Biochemistry 33, 5291-5297.
20. Herschlag, D., Eckstein, F., & Cech, T. R. (1993a) Biochemistry 32, 8299-8311.
21. Herschlag, D., Eckstein, F., & Cech, T. R. (1993b) Biochemistry 32, 8312-8321.
22. Inoue, T., & Kay, P. S. (1987) Nature 327, 343-346.
23. Johnson, K. A. (1992) in The Enzymes (Sigman, D., Ed.) Vol. 20, p 1-61, Academic Press, New York.
24. Kierzek, R., Caruthers, M. H., Longfellow, C. E., Swinton, D., Turner, D. H., & Freier, S. M. (1986) Biochemistry 25, 7840-7846.
25. Kim, S. -H., & Cech, T. R. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 8788-8792.
26. Li, Y., Bevilacqua, P. C., Mathews, D., & Turner, D. H. (1995) Biochemistry 34, 14394-14399.
27. Longfellow, C. E., Kierzek, R., & Turner, D. H. (1990) Biochemistry 29, 278-285.
28. McConnell T. S., & Cech, T. R. (1995) Biochemistry 34, 4056-4067.
29. McConnell T. S., Cech, T. R., & Herschlag, D. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 8362-8366.
30. Michel, F., Hanna, M., Green, R., Bartel, D., & Szostak, J. W. (1989) Nature 342, 391-395.
31. Michel, F., Netter, P., Xu, M.-Q., & Shub, D. A. (1990) Genes Dev. 4, 777-788.
32. Moran, S., Kierzek, R., & Turner, D. H. (1993) Biochemistry 32, 5247-5256.
33. Narlikar, G. J., Gopalakrishnan, V., McConnell, T. S., Usman, N., & Herschlag, D. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 3668-3672.
34. Piccirilli, J. A., Vyle, J. S., Caruthers, M. H., & Cech, T. R. (1993) Nature 361, 85-88.
35. Price, J. V., & Cech, T. R. (1988) Genes Dev. 2, 1439-1447.
36. Pyle, A. M., & Cech, T. R. (1991) Nature 350, 628-631.
37. Richards, E. G. (1975) in Handbook of Biochemistry and Molecular Biology: Nucleic Acids (Fasman, G. D., Ed.) 3rd ed., Vol. I, p 597, CRC Press, Cleveland, OH.
38. Sugimoto, N., Kierzek, R., & Turner, D. H. (1988) Biochemistry 27, 6384-6392.
39. Sullivan, F. X., & Cech, T. R. (1985) Cell 42, 639-648.
40. Tanner, N. K., & Cech, T. R. (1987) Biochemistry 26, 3330-3340.
41. Walstrum, S. A., & Uhlenbeck, O. C. (1990) Biochemistry 29, 10573-10576.
42. Yarus, M., Illangesekare, M., & Christian, E. (1991) J. Mol. Biol. 222, 995-1012.
43. Zaug, A., Grosshans, C. A., & Cech, T. R. (1988) Biochemistry 27, 8924-8931.