메뉴 건너뛰기




Volumn 21, Issue 4, 1997, Pages 223-227

Detection of eukaryotic promoters using Markov transition matrices

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ARTICLE; BIOLOGICAL MODEL; COMPUTER SIMULATION; CONSENSUS SEQUENCE; EUKARYOTIC CELL; GENETIC PROCEDURES; GENETIC TRANSCRIPTION; NUCLEOTIDE SEQUENCE; PROBABILITY; PROMOTER REGION; TATA BOX;

EID: 0031299508     PISSN: 00978485     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0097-8485(96)00040-X     Document Type: Article
Times cited : (57)

References (17)
  • 1
    • 0025275564 scopus 로고
    • Application of a new method of pattern recognition in DNA sequence analysis: A study of E. coli promoters
    • Alexandrov, N. N. and Mironov, A. A. (1990) Application of a new method of pattern recognition in DNA sequence analysis: a study of E. coli promoters. Nucleic Acids Research 18, 1847-1852.
    • (1990) Nucleic Acids Research , vol.18 , pp. 1847-1852
    • Alexandrov, N.N.1    Mironov, A.A.2
  • 2
    • 0025278259 scopus 로고
    • Weight matrix description of four eukaryotic RNA Polymerase II promoter elements derived from 502 unrelated promoter sequences
    • Bucher, P. (1990) Weight matrix description of four eukaryotic RNA Polymerase II promoter elements derived from 502 unrelated promoter sequences. Journal of Molecular Biology 212, 563-578.
    • (1990) Journal of Molecular Biology , vol.212 , pp. 563-578
    • Bucher, P.1
  • 4
    • 0000241874 scopus 로고
    • GENMARK: Parallel gene recognition for both DNA strands
    • Borodovsky, M. and McIninch, J. (1993) GENMARK: parallel gene recognition for both DNA strands. Computers and Chemistry 17, 123-133.
    • (1993) Computers and Chemistry , vol.17 , pp. 123-133
    • Borodovsky, M.1    McIninch, J.2
  • 5
    • 0030449157 scopus 로고    scopus 로고
    • The statistical significance of nucleotide position-weight matrix matches
    • Claverie, J.-M. and Audic, S. (1996) The statistical significance of nucleotide position-weight matrix matches. Computers Applications in the Biosciences 12, 431-439.
    • (1996) Computers Applications in the Biosciences , vol.12 , pp. 431-439
    • Claverie, J.-M.1    Audic, S.2
  • 6
    • 0031298796 scopus 로고    scopus 로고
    • The difficulty of identifying genes in anonymous vertebrate sequences
    • Claverie, J.-M., Poirot, O. and Lopez, F. (1997) The difficulty of identifying genes in anonymous vertebrate sequences. Computers and Chemistry 21, 203-214.
    • (1997) Computers and Chemistry , vol.21 , pp. 203-214
    • Claverie, J.-M.1    Poirot, O.2    Lopez, F.3
  • 7
    • 0021888883 scopus 로고
    • Assessing the biological significance of primary structure consensus patterns using sequence databanks. I. Heat-shock and glucocorticoid control elements in eukaryotic promoters
    • Claverie, J.-M. and Sauvaget, I. (1985) Assessing the biological significance of primary structure consensus patterns using sequence databanks. I. Heat-shock and glucocorticoid control elements in eukaryotic promoters. Computer Applications in the Biosciences 1, 95-104.
    • (1985) Computer Applications in the Biosciences , vol.1 , pp. 95-104
    • Claverie, J.-M.1    Sauvaget, I.2
  • 8
    • 0025317956 scopus 로고
    • k-tuple frequency analysis: From intron/exon discrimination to T-cell epitope mapping
    • Claverie, J.-M., Sauvaget, I. and Bougueleret, L. (1990) k-tuple frequency analysis: from intron/exon discrimination to T-cell epitope mapping. Methods in Enzymology 183, 237-252.
    • (1990) Methods in Enzymology , vol.183 , pp. 237-252
    • Claverie, J.-M.1    Sauvaget, I.2    Bougueleret, L.3
  • 9
    • 0025853156 scopus 로고
    • Neural network optimization for E. coli promoter prediction
    • Demeler, B. and Zhou, G. W. (1991) Neural network optimization for E. coli promoter prediction. Nucleic Acids Research 19, 1593-1599.
    • (1991) Nucleic Acids Research , vol.19 , pp. 1593-1599
    • Demeler, B.1    Zhou, G.W.2
  • 10
    • 0027059264 scopus 로고
    • Assessment of protein coding measures
    • Fickett, J. W. and Tung, C. (1992) Assessment of protein coding measures. Nucleic Acids Research 20, 6441-6450.
    • (1992) Nucleic Acids Research , vol.20 , pp. 6441-6450
    • Fickett, J.W.1    Tung, C.2
  • 11
    • 0029845236 scopus 로고    scopus 로고
    • E. coli promoter sequences: Analysis and prediction
    • Hertz, G. Z. and Stormo, G. D. (1996) E. coli promoter sequences: analysis and prediction. Methods in Enzymology 273, 30-42.
    • (1996) Methods in Enzymology , vol.273 , pp. 30-42
    • Hertz, G.Z.1    Stormo, G.D.2
  • 12
    • 0026672260 scopus 로고
    • Prediction of structural and functional features of protein and nucleic acids sequences by artificial neural networks
    • Hirst, J. D. and Sternberg, M. J. (1992) Prediction of structural and functional features of protein and nucleic acids sequences by artificial neural networks. Biochemistry 31, 7211-7218.
    • (1992) Biochemistry , vol.31 , pp. 7211-7218
    • Hirst, J.D.1    Sternberg, M.J.2
  • 13
    • 0026775123 scopus 로고
    • An assessment of neural network and statistical approaches for prediction of E. coli promoter sites
    • Horton, P. B. and Kanehisa, M. (1992) An assessment of neural network and statistical approaches for prediction of E. coli promoter sites. Nucleic Acids Research 20, 4331-4338.
    • (1992) Nucleic Acids Research , vol.20 , pp. 4331-4338
    • Horton, P.B.1    Kanehisa, M.2
  • 14
    • 0030461607 scopus 로고    scopus 로고
    • The prediction of vertebrate promoter regions using differential hexamer frequency analysis
    • Hutchinson, G. B. (1996) The prediction of vertebrate promoter regions using differential hexamer frequency analysis. Computer Applications in the Biosciences 12, 391-398.
    • (1996) Computer Applications in the Biosciences , vol.12 , pp. 391-398
    • Hutchinson, G.B.1
  • 16
    • 0029038960 scopus 로고
    • Predicting Pol II promoter sequences using transcription factor binding sites
    • Prestridge, D. S. (1995) Predicting Pol II promoter sequences using transcription factor binding sites. Journal of Molecular Biology 249, 923-932.
    • (1995) Journal of Molecular Biology , vol.249 , pp. 923-932
    • Prestridge, D.S.1
  • 17
    • 0028321942 scopus 로고
    • Recognition of regulatory regions in genomic sequences
    • Wingender, E. (1994) Recognition of regulatory regions in genomic sequences. Journal of Biotechnology 35, 273-280.
    • (1994) Journal of Biotechnology , vol.35 , pp. 273-280
    • Wingender, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.