Glucocorticoid receptor-glucocorticoid response element binding stimulates nucleosome disruption by the SWI/SNF complex

Molecular and Cellular Biology

Volumn 17, Issue 2, 1997, Pages 895-905

  Östlund Farrants, Ann Kristin ^a   Blomquist, Patrik ^a   Kwon, Hyockman ^b   Wrange, Örjan ^a  

^a KAROLINSKA INSTITUTE   (Sweden)

^b Dankook University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CURVED DNA; DEOXYRIBONUCLEASE I; DNA; GLUCOCORTICOID; GLUCOCORTICOID RECEPTOR; HISTONE; TRANSCRIPTION FACTOR;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BINDING SITE; CHROMATIN; CHROMATIN CONDENSATION; DNA BINDING; DNA FOOTPRINTING; DNA HISTONE INTERACTION; DNA SEQUENCE; GENE CONTROL; GENE INDUCTION; HELA CELL; HUMAN; HUMAN CELL; NONHUMAN; NUCLEOSOME; PRIORITY JOURNAL; PROTEIN PURIFICATION; RAT; TRANSCRIPTION REGULATION;

EID: 1842369150     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.17.2.895     Document Type: Article

References (68)

1. Adams, C. C., and J. L. Workman. 1993. Nucleosome displacement in transcription. Cell 72:1-4.
2. Almouzni, G., and A. P. Wolffe. 1993. Replication-coupled chromatin assembly is required for repression of basal transcription in vivo. Genes Dev. 7:2033-2047.
3. Archer, T. K., M. G. Cordingley, R. G. Wolford, and G. L. Hager. 1991. Transcription factor access is mediated by accurately positioned nucleosomes on the mouse mammary tumor virus promoter. Mol. Cell. Biol. 11: 688-698.
4. Blomquist, P., Q. Li, and Ö. Wrange. 1996. The affinity of nuclear factor 1 for its DNA site is drastically reduced by nucleosomal organization irrespective of its rotational or translational position. J. Biol. Chem. 271:153-159.
5. Bortvin, A. B., and F. Winston. 1996. Evidence that Spt6p controls chromatin structure by direct interaction with histones. Science 272:1473-1476.
6. Brenowitz, M., D. F. Senear, M. A. Shea, and G. K. Ackers. 1986. Quantitative DNase footprint titration: a method for studying protein-DNA interactions. Methods Enzymol. 130:132-181.
7. Cairns, B. R., Y.-J. Kim, M. H. Sayre, B. C. Laurent, and R. D. Kornberg. 1994. A multisubunit complex containing the SWI1/ADR6, SWI2/SNF2, SWI3, SNF5 and SNF6 gene products isolated from yeast. Proc. Natl. Acad. Sci. USA 91:1950-1954.
8. Carlson, M., and B. C. Laurent. 1994. The SNF/SWI family of global transcriptional activators. Curr. Opin. Cell Biol. 6:396-402.
9. Carr, K. D., and H. Richard-Foy. 1990. Glucocorticoids locally disrupt an array of positioned nucleosomes on the rat tyrosine aminotransferase promoter in hepatoma cells. Proc. Natl. Acad. Sci. USA 87:9300-9304.
10. Chiba, H, M. Muramatsu, A. Nomoto, and H. Kato. 1994. Two human homologues of Saccharomyces cerevisiae SWI2/SNF2 and Drosophila brahma and transcriptional coactivators cooperating with the estrogen and the retinoic acid receptors. Nucleic Acids Res. 22:1815-1820.
11. Cordingley, M. G., A. T. Riegel, and G. L. Hager. 1987. Steroid-dependent interaction of transcription factors with the inducible promoter of mouse mammary tumor virus in vivo. Cell 48:261-270.
12. Côté, J., J. Quinn, J. L. Workman, and C. L. Peterson. 1994. Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science 265:53-60.
13. Dingwall, A. K., S. J. Beek, C. M. McCallum, J. W. Tamkun, G. W. Kalpana, S. P. Geoff, and M. P. Scott. 1995. The Drosophila snr1 and brm proteins are related to yeast SWI/SNF proteins and are components of a large protein complex. Mol. Biol. Cell 6:777-791.
14. Durrin, L. K., R. K. Mann, and M. Grunstein. 1992. Nucleosome loss activates CUP1 and HIS3 promoters to fully induced levels in the yeast Saccharomyces cerevisiae. Mol. Cell. Biol. 12:1621-1629.
15. Elfring, L. K., R. Deuring, C. M. McCallum, C. L. Peterson, and J. W. Tamkun. 1994. Identification and characterization of Drosophila relatives of the yeast transcriptional activator SNF2/SWI2. Mol. Cell. Biol. 14:2225-2234.
16. Fascher, K.-D., J. Schmitz, and W. Hörtz. 1993. Structural and functional requirements for the chromatin transition at the PHO5 promoter in Saccharomyces cerevisiae upon PHO5 activation. J. Mol. Biol. 231:658-667.
17. Godde, J. S., Y. Nakatani, and A. P. Wolffe. 1996. The amino terminal tails of the core histones and the translational positioning of the TATA box determine TBP/TFIIA association with nucleosomal DNA. Nucleic Acids Res. 23:4557-4564.
18. Godde, J. S., and A. P. Wolffe. 1995. Disruption of reconstituted nucleosomes. J. Biol. Chem. 270:27399-27402.
19. Gorski, K., M. Carneiro, and U. Schibler. 1986. Tissue-specific in vitro transcription from the mouse albumin promoter. Cell 47:767-776.
20. Gounari, F., R. De Francesco, J. Schmitt, P. C. van der Vliet, R. Cortese, and H. Stunneberg. 1990. Amino-terminal domain of NF1 binds to DNA as a dimer and activates adenovirus DNA replication. EMBO J. 9:559-566.
21. Gross, D. S., and W. T. Garrard. 1988. Nuclease hypersensitive sites in chromatin. Annu. Rev. Biochem. 57:159-197.
22. Grunstein, M. 1990. Histone function in transcription. Annu. Rev. Cell Biol. 6:643-678.
23. Hirschhorn, J. N., S. A. Brown, C. D. Clark, and F. Winston. 1992. Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure. Genes Dev. 6:2288-2298.
24. Imbalzano, A. N., H. Kwon, M. R. Green, and R. E. Kingston. 1994. Facilitated binding of TATA-binding protein to nucleosomal DNA. Nature 370: 481-485.
25. Jantzen, H.-M., U. Strähle, B. Gloss, F. Stewart, W. Schmid, M. Boshart, R. Miksicek, and G. Schütz. 1987. Cooperativity of glucocorticoid response elements located far upstream of the tyrosine aminotransferase gene. Cell 49:29-38.
26. Khavari, P. A., C. L. Peterson, J. W. Tamkun, D. B. Mendel, and G. R. Crabtree. 1993. BRG1 contains a conserved domain of the SWI2/SNF2 family necessary for normal mitotic growth and transcription. Nature 366: 170-174.
27. Kruger, W., and I. Herskowitz. 1991. A negative regulator of HO transcription, SIN1 (SPT2), is a nonspecific DNA-binding protein related to HMG1. Mol. Cell. Biol. 11:4135-4146.
28. Kwon, H, A. N. Imbalzano, P. A. Khavari, R. E. Kingston, and M. R. Green. 1994. Nucleosome disruption and enhancement of activator binding by a human SWI/SNF complex. Nature 370:477-481.
29. Laurent, B. C., M. A. Treitel, and M. Carlson. 1991. Functional interdependence of yeast SNF2, SNF5, and SNF6 proteins in transcriptional activation. Proc. Natl. Acad. Sci. USA 88:2687-2691.
30. Laybourn, P. J., and J. T. Kadonaga. 1991. Role of nucleosomal cores and histone H1 in regulation of transcription by RNA polymerase II. Science 254:238-245.
31. Li, W., and Ö. Wrange. 1993. Translational positioning of a nucleosomal glucocorticoid response element modulates glucocorticoid receptor affinity. Genes Dev. 7:2471-2482.
32. Li, Q., and Ö. Wrange. 1995. Accessibility of a glucocorticoid response element in a nucleosome depends on its rotational positioning. Mol. Cell. Biol. 15:4375-4384.
33. Lorch, Y., J. W. LaPointe, and R. D. Kornberg. 1987. Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones. Cell 49:203-210.
34. Losa, R., and D. D. Brown. 1987. A bacteriophage RNA polymerase transcribes in vitro through a nucleosome core without displacing it. Cell 50:801-808.
35. Luisi, B. F., W. X. Xu, Z. Otwinowski, L. P. Freedman, K. R. Yamamoto, and P. B. Sigler. 1991. Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA. Nature 252:497-505.
36. Lutter, L. C. 1978. Kinetic analysis of deoxyribonuclease I cleavages in the nucleosome core: evidence for a DNA superhelix. J. Mol. Biol. 124:391-420.
37. Morgan, J. E., and J. P. Whitlock. 1992. Transcription-dependent and transcription-independent nucleosome disruption induced by dioxin. Proc. Natl. Acad. Sci. USA 89:11622-11626.
38. Muchardt, C., and M. Yaniv. 1993. A human homologue of Saccharomyces cerevisiae SNF2/SWI2 and Drosophila brm genes potentiates transcriptional activation by the glucocorticoid receptor. EMBO J. 12:4279-4290.
39. Okino, S. T., and J. P. Whitlock, Jr. 1995. Dioxin induces localized, graded changes in chromatin structure: implications for Cyp1A1 gene transcription. Mol. Cell. Biol. 15:3714-3721.
40. Östlund Farrants, A.-K., and Ö. Wrange. Unpublished data.
41. Owen-Hughes, T., R. T. Utley, J. CôtÉ, C. L. Peterson, and J. L. Workman. 1996. Persistent site-specific remodeling of a nucleosome array by transient action of the SWI/SNF complex. Science 273:513-516.
42. Paranjape, S. M., R. T. Kamakaka, and J. T. Kadonaga. 1994. Role of chromatin structure in the regulation of transcription by RNA polymerase II. Annu. Rev. Biochem. 63:265-297.
43. Perlmann, T., and Ö. Wrange. 1988. Specific glucocorticoid receptor binding to DNA reconstituted in a nucleosome. EMBO J. 7:3073-3079.
44. Perlmann, T., and Ö. Wrange. 1991. Inhibition of chromatin assembly in Xenupus oocytes correlates with derepression of the mouse mammary tumor virus promoter. Mol. Cell. Biol. 11:5259-5265.
45. Peterson, C. L. 1996. Multiple SWItches to turn chromatin. Curr. Opin. Genet. Dev. 6:171-175.
46. Peterson, C. L., A. Dingwall, and M. P. Scott. 1994. Five SWI/SNF gene products are components of a large multisubunit complex required for transcriptional enhancement. Proc. Natl. Acad. Sci. USA 91:2905-2908.
47. Peterson, C. L., and I. Herskowitz. 1992. Characterization of the yeast SWI1, SWI2, and SWI3 genes, which encode a global activator of transcription. Cell 68:573-583.
48. Pham, T. A., Y. P. Hwung, D. P. McDonnell, and B. W. O'Malley. 1991. Transactivation function facilitates the disruption of chromatin structure by estrogen receptor derivatives in vivo. J. Biol. Chem. 266:18179-18187.
49. Pham, T. A., D. P. McDonnell, M.-J. Tsai, and B. W. O'Malley. 1992. Modulation of progesterone receptor binding to progesterone response elements by positioned nucleosomes. Biochemistry 31:1570-1578.
50. Pina, B., U. Bruggemeier, and M. Beato. 1990. Nucleosome positioning modulates accessibility of regulatory proteins to the mouse mammary tumor virus promoter. Cell 60:719-731.
51. Quinn, J., A. M. Fryberg, R. W. Ganster, M. C. Schmidt, and C. L. Peterson. 1996. DNA-binding properties of the yeast SWI/SNF complex. Nature 379: 844-847.
52. Randazzo, F. P., P. Khavari, G. Crabtree, J. Tamkun, and J. Rossant. 1994. brg1: a putative murine homologue of the Drosophila brahma gene, a homeotic gene regulator. Dev. Biol. 161:229-242.
53. Reik, A., G. Schütz, and A. F. Stewart. 1991. Glucocorticoids are required for establishment and maintenance of an alteration in chromatin structure: induction leads to a reversible disruption of nucleosomes over an enhancer. EMBO J. 10:2569-2576.
54. Richard-Foy, H., and G. L. Hager. 1987. Sequence-specific positioning of nucleosomes over the steroid-inducible MMTV promoter. EMBO J. 6:2321-2328.
55. Shrader, T. E., and D. M. Crothers. 1989. Artificial nucleosome positioning sequences. Proc. Natl. Acad. Sci. USA 86:7418-7422.
56. Simpson, R. T. 1991. Nucleosome positioning: occurrence, mechanisms and functional consequences. Prog. Nucleic Acid Res. Mol. Biol. 40:143-184.
57. Tamkun, J. W., R. Deuring, M. P. Scott, M. Kissinger, A. M. Pattatucci, T. C. Kaufman, and J. A. Kennison. 1992. brahma: a regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SW12. Cell 68:561-572.
58. Tsukiyama, T., C. Daniel, J. Tamkun, and C. Wu. 1995. ISWI, a member of the SWI2/SNF2 ATPase family, encodes the 140 kDa subunit of the nucleosome remodeling factor. Cell 83:1021-1026.
59. Tsukiyama, T., and C. Wu. 1995. Purification and properties of an ATP-dependent nucleosome remodeling factor. Cell 83:1011-1020.
60. Wall, G., P. D. Varga-Weisz, R. Sandaltzopoulos, and P. B. Becker. 1995. Chromatin remodeling by GAGA factor and heat shock factor at the hypersensitive Drosophila hsp26 promoter in vitro. EMBO J. 14:1727-1736.
61. Wang, W., J. Côté, Y. Xue, S. Zhou, P. A. Khavari, S. R. Bigger, C. Muchardt, G. V. Kalpana, S. P. Goff, M. Yaniv, J. L. Workman, and G. R. Crabtree. 1996. Purification and biochemical heterogeneity of the mammalian SWI/ SNF complex. EMBO J. 15:5370-5382.
62. Westin, L., B. Gelius, and A.-K. Östlund Farrants. Unpublished data.
63. Wilson, C. J., D. M. Chao, A. N. Imbalzano, G. R. Schnitzler, R. E. Kingston, and R. A. Young. 1996. RNA polymerase II holoenzyme contains SWI/SNF regulators involved in chromatin remodeling. Cell 84:235-244.
64. Wolffe, A. P. 1994. Nucleosome positioning and modification: chromatin structures that potentiate transcription. Trends Biochem. Sci. 19:240-244.
65. Wolffe, A. P. 1994. Transcription in tune with histones. Cell 77:13-16.
66. Workman, J. L., S. M. Abmayr, W. A. Cromlish, and R. G. Roeder. 1988. Transcriptional regulation by the immediate early protein of pseudorabies virus during in vitro nucleosome assembly. Cell 55:211-219.
67. Yoshinaga, S. K., C. I. Peterson, I. Herskowitz, and K. R. Yamamoto. 1992. Roles of SWI1, SWI2 and SWI3 proteins for transcriptional enhancement by steroid receptors. Science 258:1598-1604.
68. Zaret, K. S., and K. R. Yamamoto. 1984. Reversible and persistent changes in chromatin structure accompany activation of a glucocorticoid-dependent enhancer element. Cell 38:29-38.