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of special interest. A more detailed treatment of recent developments in SPR data analysis than is possible in this broader review.
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of special interest Schuck P. Reliable determination of binding affinity and kinetics using surface plasmon resonance biosensors. Curr Opin Biotechnol. 8:1997;498-502 A more detailed treatment of recent developments in SPR data analysis than is possible in this broader review.
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Determination of association rate constants by an optical biosensor using initial rate analysis
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Interpretation of deviations from pseudo-first-order kinetic behaviour in the characterisation of ligand binding by biosensor technology
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Analysis of mass transport-limited binding kinetics in evanescent wave biosensors
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Schuck P, Minton AP. Analysis of mass transport-limited binding kinetics in evanescent wave biosensors. Anal Biochem. 240:1996;262-272.
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Shen B-J, Hage T, Sebald W. Global and local determinants for the kinetics of interleukin-4/interleukin-4 receptor α chain interaction. A biosensor study employing recombinant interleukin-4-binding protein. Eur J Biochem. 240:1996;252-261.
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Kinetics of ligand binding to receptor immobilised in a polymer matrix, as detected with an evanescent wave biosensor. I. A computer simulation of the influence of mass transport
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Schuck P. Kinetics of ligand binding to receptor immobilised in a polymer matrix, as detected with an evanescent wave biosensor. I. A computer simulation of the influence of mass transport. Biophys J. 70:1996;1230-1249.
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Schuck, P.1
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Kinetic analysis of a protein antigen - Antibody interaction limited by mass transport on an optical biosensor
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Myszka, D.G.1
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10
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0030478020
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Kinetic analysis of biosensor data: Elementary tests for self-consistency
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of outstanding interest. A good introduction to the careful appraisal of biosensor-derived binding constants. It suggests some preliminary tests to ensure that the various data elements are consistent.
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of outstanding interest Schuck P, Minton AP. Kinetic analysis of biosensor data: elementary tests for self-consistency. Trends Biochem Sci. 21:1996;458-460 A good introduction to the careful appraisal of biosensor-derived binding constants. It suggests some preliminary tests to ensure that the various data elements are consistent.
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Trends Biochem Sci
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Schuck, P.1
Minton, A.P.2
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0029764534
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A mutational analysis of the binding of two proteins to the same antibody
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Dall'Aqua W, Goldman ER, Eisenstein E, Mariuzza RA. A mutational analysis of the binding of two proteins to the same antibody. Biochemistry. 35:1996;9667-9676.
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Dall'Aqua, W.1
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Duschl C, Sevin-Landais A-F, Vogel H. Surface engineering: optimization of antigen presentation in self-assembled monolayers. Biophys J. 70:1996;1985-1995.
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Duschl, C.1
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Vogel, H.3
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13
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0030039913
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Competition biacore for measuring true affinities: Large differences from values determined from binding kinetics
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of special interest. Competition methods are designed to suppress the rebinding artefact sometimes observed during the measurement of ligand off rates. This paper shows the effect of competition on real data.
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of special interest Nieba L, Krebber A, Plückthun A. Competition biacore for measuring true affinities: large differences from values determined from binding kinetics. Anal Biochem. 234:1996;155-165 Competition methods are designed to suppress the rebinding artefact sometimes observed during the measurement of ligand off rates. This paper shows the effect of competition on real data.
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Anal Biochem
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Nieba, L.1
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14
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Distinct molecular recognition of calmodulin-binding sites in the neuronal and macrophage nitric oxide synthases: A surface plasmon resonance study
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Zoche M, Beinert M, Beyerman M, Koch K-W. Distinct molecular recognition of calmodulin-binding sites in the neuronal and macrophage nitric oxide synthases: a surface plasmon resonance study. Biochemistry. 35:1996;8742-8747.
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Biochemistry
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Zoche, M.1
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Beyerman, M.3
Koch K-W4
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15
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0029093730
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Detection and quantitation of hexa-histidine-tagged recombinant proteins on western blots and by a surface plasmon resonance biosensor technique
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O'Shannessy DJ, O'Donnell KC, Martin J, Brigham-Burke M. Detection and quantitation of hexa-histidine-tagged recombinant proteins on western blots and by a surface plasmon resonance biosensor technique. Anal Biochem. 229:1995;119-124.
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O'Shannessy, D.J.1
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0030077272
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A self-assembled monolayer for the binding and study of histidine-tagged proteins by surface-plasmon resonance
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Sigal GB, Bamdad C, Barberis A, Strominger J. A self-assembled monolayer for the binding and study of histidine-tagged proteins by surface-plasmon resonance. Anal Chem. 68:1996;490-497.
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Sigal, G.B.1
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0030989164
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Monomeric isomers of human interleukin 5 show that 1:1 receptor recruitment is sufficient for function
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Li J, Cook R, Doyle ML, Hensley P, McNulty DE, Chaiken I. Monomeric isomers of human interleukin 5 show that 1:1 receptor recruitment is sufficient for function. Proc Natl Acad Sci USA. 94:1997;6694-6699.
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Li, J.1
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Chaiken, I.6
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18
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0029119955
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A general method to recondition and reuse BIAcore sensor chips fouled with covalently immobilised protein/peptide
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Chatelier RC, Gengenbach TR, Greisser HJ, Brigham-Burke M, O'Shannessy DJ. A general method to recondition and reuse BIAcore sensor chips fouled with covalently immobilised protein/peptide. Anal Biochem. 229:1995;112-118.
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Chatelier, R.C.1
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19
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0031027122
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Characterisation of binding interactions by isothermal titration microcalorimetry
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of special interest. A more thorough treatment of recent progress in the field of ITC.
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of special interest Doyle M. Characterisation of binding interactions by isothermal titration microcalorimetry. Curr Opin Biotechnol. 8:1997;31-35 A more thorough treatment of recent progress in the field of ITC.
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Curr Opin Biotechnol
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, pp. 31-35
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Doyle, M.1
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20
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0010606709
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Micro-calorimetry of protein-protein interactions
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of special interest. Clegg R.A. Humana Press Inc Totowa NJ A clear introduction to the use of calorimetry in measuring protein - protein interactions
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of special interest Cooper A. Micro-calorimetry of protein-protein interactions. Clegg RA. Protein Targeting Protocols: Detection and Isolation. 1997;Humana Press Inc, Totowa NJ, A clear introduction to the use of calorimetry in measuring protein - protein interactions.
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Protein Targeting Protocols: Detection and Isolation
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Cooper, A.1
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21
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Van't Hoff revisited: Enthalpy of association of protein sub-units
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Weber G. Van't Hoff revisited: enthalpy of association of protein sub-units. J Phys Chem. 99:1995;1052-1059.
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J Phys Chem
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Weber, G.1
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22
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0030601794
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Thermodynamic characterisation of the coupled folding and association of heterodimeric coiled coils (leucine zippers)
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Jelesarov I, Bosshard HR. Thermodynamic characterisation of the coupled folding and association of heterodimeric coiled coils (leucine zippers). J Mol Biol. 263:1996;344-358.
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Jelesarov, I.1
Bosshard, H.R.2
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23
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-
0029794909
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Structural and mutational analysis of affinity-inert contact residues at the growth hormone - Receptor interface
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of outstanding interest. A clear example of the difference between contact residues that alter the free energy and those that don't. The role of entropy - enthalpy compensation is well explained.
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of outstanding interest Pearce KH, Ultsch MH, Kelley RF, De Vos AM, Wells JA. Structural and mutational analysis of affinity-inert contact residues at the growth hormone - receptor interface. Biochemistry. 35:1996;10300-10307 A clear example of the difference between contact residues that alter the free energy and those that don't. The role of entropy - enthalpy compensation is well explained.
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Biochemistry
, vol.35
, pp. 10300-10307
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Pearce, K.H.1
Ultsch, M.H.2
Kelley, R.F.3
De Vos, A.M.4
Wells, J.A.5
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24
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0031567108
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Energetics of target peptide recognition by calmodulin: A calorimetric study
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Wintrode PL, Privalov PL. Energetics of target peptide recognition by calmodulin: a calorimetric study. J Mol Biol. 266:1997;1050-1062.
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Wintrode, P.L.1
Privalov, P.L.2
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25
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0031106828
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Thermodynamic analysis of antigen - Antibody binding using biosensor measurements at different temperatures
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Zeder-Lutz G, Zuber E, Witz J, Van Regenmortel MHV. Thermodynamic analysis of antigen - antibody binding using biosensor measurements at different temperatures. Anal Biochem. 246:1997;123-132.
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Anal Biochem
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Zeder-Lutz, G.1
Zuber, E.2
Witz, J.3
Van Regenmortel, M.H.V.4
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26
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0028014642
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Bound water molecules and conformational stabilization help mediate an antigen - Antibody interaction
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Bhat TN, Bentley GA, Boulot G, Greene MI, Tello D, Dall'Acqua W, Souchon H, Schwartz FP, Mariuzza RA, Poljak RJ. Bound water molecules and conformational stabilization help mediate an antigen - antibody interaction. Proc Natl Acad Sci USA. 91:1994;1089-1093.
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Bhat, T.N.1
Bentley, G.A.2
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Greene, M.I.4
Tello, D.5
Dall'Acqua, W.6
Souchon, H.7
Schwartz, F.P.8
Mariuzza, R.A.9
Poljak, R.J.10
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27
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0031552366
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Thermodynamics of the interaction of barnase and barstar: Changes in free energy versus changes in enthalpy on mutation
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p is very different from the measured value for this interaction.
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p is very different from the measured value for this interaction.
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Frisch, C.1
Schreiber, G.2
Johnson, C.M.3
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Win some, lose some; Enthalpy-entropy compensation in weak intermolecular interactions
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0029963892
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Direct measurement of the association of a protein with a family of membrane receptors
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Evans LJA, Cooper A, Lakey JH. Direct measurement of the association of a protein with a family of membrane receptors. J Mol Biol. 255:1996;559-563.
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Cooper, A.2
Lakey, J.H.3
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0029857393
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The central domain of colicin N possesses the receptor recognition site but not the binding affinity of the whole toxin
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Evans LJA, Labeit S, Cooper A, Bond LH, Lakey JH. The central domain of colicin N possesses the receptor recognition site but not the binding affinity of the whole toxin. Biochemistry. 35:1996;15143-15148.
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Cooper, A.3
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31
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0029561993
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Spectroscopic, calorimetric, and kinetic demonstration of conformational adaptation in peptide antibody recognition
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Leder L, Berger C, Bornhauser S, Wendt H, Ackermann F, Jelesarov I, Bosshard HR. Spectroscopic, calorimetric, and kinetic demonstration of conformational adaptation in peptide antibody recognition. Biochemistry. 34:1995;16509-16518.
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Leder, L.1
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Evaluation of linked protonation effects in protein-binding reactions using isothermal titration calorimetry
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Baker BM, Murphy KP. Evaluation of linked protonation effects in protein-binding reactions using isothermal titration calorimetry. Biophys J. 71:1996;2049-2055.
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0031547981
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Dissecting the energetics of a protein-protein interaction: The binding of ovomucoid third domain to elastase
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p is presented and the results compare favourably with the measured values.
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p is presented and the results compare favourably with the measured values.
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Baker, B.M.1
Murphy, K.P.2
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0030993172
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Peptide ligands of pp60(c-src) SH2 domains: A thermodynamic and structural study
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Charifson PS, Shewchuk LM, Rocque W, Hummel CW, Jordan SR, Mohr C, Pacofsky GJ, Peel MR, Rodriguez M, Sternbach DD, Consler TG. Peptide ligands of pp60(c-src) SH2 domains: a thermodynamic and structural study. Biochemistry. 36:1997;6283-6293.
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Biochemistry
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Charifson, P.S.1
Shewchuk, L.M.2
Rocque, W.3
Hummel, C.W.4
Jordan, S.R.5
Mohr, C.6
Pacofsky, G.J.7
Peel, M.R.8
Rodriguez, M.9
Sternbach, D.D.10
Consler, T.G.11
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35
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0029918526
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Thermodynamic studies of SHC phosphotyrosine interaction domain recognition of the NPXPY motif
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Mandiyan V, O'Brien R, Zhou M, Margolis B, Lemmon MA, Sturtevant JM, Schlessinger J. Thermodynamic studies of SHC phosphotyrosine interaction domain recognition of the NPXPY motif. J Biol Chem. 271:1996;4770-4775.
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Mandiyan, V.1
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Margolis, B.4
Lemmon, M.A.5
Sturtevant, J.M.6
Schlessinger, J.7
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0029783312
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Energetics of cyclodextrin induced dissociation of insulin
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Lovatt M, Cooper A, Camilleri P. Energetics of cyclodextrin induced dissociation of insulin. Eur Biophys J. 24:1996;354-357.
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Eur Biophys J
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Lovatt, M.1
Cooper, A.2
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37
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33748600422
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Thermodynamics and kinetics of dissociation of ligand induced dimers of vancomycin antibiotics
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McPhail D, Cooper A. Thermodynamics and kinetics of dissociation of ligand induced dimers of vancomycin antibiotics. J Chem Soc Faraday Trans. 93:1997;2283-2289.
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McPhail, D.1
Cooper, A.2
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38
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0030932131
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Individual rate constants for the interaction of Ras proteins with GTPase-activating proteins determined by fluorescence spectroscopy
-
of special interest. A fine example of the use of kinetics obtained from fluorescence binding data to distinguish between different models of protein - protein interaction. Here, the GTPase-activating protein (GAP) and the neurofibromatosis type-1 (NF1) protein appear to participate directly in GTP cleavage by Ras.
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of special interest Ahmadian MR, Hoffmann U, Goody RS, Wittinghofer A. Individual rate constants for the interaction of Ras proteins with GTPase-activating proteins determined by fluorescence spectroscopy. Biochemistry. 36:1997;4535-4541 A fine example of the use of kinetics obtained from fluorescence binding data to distinguish between different models of protein - protein interaction. Here, the GTPase-activating protein (GAP) and the neurofibromatosis type-1 (NF1) protein appear to participate directly in GTP cleavage by Ras.
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(1997)
Biochemistry
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, pp. 4535-4541
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Ahmadian, M.R.1
Hoffmann, U.2
Goody, R.S.3
Wittinghofer, A.4
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39
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0030867940
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Protein - Protein interaction specificity of lm9 for the endonuclease toxin colicin E9 defined by homologue-scanning mutagenesis
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Li W, Dennis CA, Moore GR, James R, Kleanthous C. Protein - protein interaction specificity of lm9 for the endonuclease toxin colicin E9 defined by homologue-scanning mutagenesis. J Biol Chem. 272:1997;22253-22258.
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J Biol Chem
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Li, W.1
Dennis, C.A.2
Moore, G.R.3
James, R.4
Kleanthous, C.5
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40
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-
0030987325
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Structure-function analysis of TAF130: Identification and characterization of a high-affinity TATA binding protein interaction domain in the N terminus of yeast TAF(II)130
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Bai Y, Perez GM, Beechem JM, Weil PA. Structure-function analysis of TAF130: identification and characterization of a high-affinity TATA binding protein interaction domain in the N terminus of yeast TAF(II)130. Mol Cell Biol. 17:1997;3081-3093.
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Mol Cell Biol
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Bai, Y.1
Perez, G.M.2
Beechem, J.M.3
Weil, P.A.4
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0030741319
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Restriction by ankyrin of band 3 rotational mobility in human erythrocyte membranes and reconstituted lipid vesicles
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Che A, Morrison I, Pan RJ, Cherry RJ. Restriction by ankyrin of band 3 rotational mobility in human erythrocyte membranes and reconstituted lipid vesicles. Biochemistry. 36:1997;9588-9595.
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Biochemistry
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Che, A.1
Morrison, I.2
Pan, R.J.3
Cherry, R.J.4
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42
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0029838186
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Probing the structure and function of the tachykinin neurokinin-2 receptor through biosynthetic incorporation of fluorescent amino acids at specific sites
-
of special interest. The only way to use fluorescence in cells is to use probes whose wavelengths are beyond range of the cellular background. Here, the promising results from stop codon suppression show how unnatural amino acids can be incorporated to give useful probes of protein - peptide binding.
-
of special interest Turcatti G, Nemeth K, Edgerton MD, Meseth U, Talabot F, Peitsch M, Knowles J, Vogel H, Chollet A. Probing the structure and function of the tachykinin neurokinin-2 receptor through biosynthetic incorporation of fluorescent amino acids at specific sites. J Biol Chem. 271:1996;19991-19996 The only way to use fluorescence in cells is to use probes whose wavelengths are beyond range of the cellular background. Here, the promising results from stop codon suppression show how unnatural amino acids can be incorporated to give useful probes of protein - peptide binding.
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(1996)
J Biol Chem
, vol.271
, pp. 19991-19996
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Turcatti, G.1
Nemeth, K.2
Edgerton, M.D.3
Meseth, U.4
Talabot, F.5
Peitsch, M.6
Knowles, J.7
Vogel, H.8
Chollet, A.9
-
43
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-
0030610646
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2+ based on green fluorescent proteins and calmodulin
-
of outstanding interest. A clear indication of how GFP engineering will open up new possibilities for measurements of interactions in vivo.
-
2+ based on green fluorescent proteins and calmodulin. Nature. 388:1997;882-887 A clear indication of how GFP engineering will open up new possibilities for measurements of interactions in vivo.
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(1997)
Nature
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Miyawaki, A.1
Llopis, J.2
Heim, R.3
McCaffery, J.M.4
Adams, J.A.5
Ikura, M.6
Tsien, R.Y.7
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44
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-
0029741379
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5 quarternary structure of cholera toxin
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of special interest. This paper gives precise data on the intracellular site of the dissociation of the A and B subunits. Confocal microscopy is used with FRET to study the fate of an internalised protein complex.
-
5 quarternary structure of cholera toxin. EMBO J. 15:1996;4246-4253 This paper gives precise data on the intracellular site of the dissociation of the A and B subunits. Confocal microscopy is used with FRET to study the fate of an internalised protein complex.
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EMBO J
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Bastiaens, P.I.H.1
Majoul, I.V.2
Verveer, P.3
Soling H-D4
Jovin, T.M.5
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45
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0026013127
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Circular dichroism study on the conformational stability of the dimerisation domain of transcription factor LFB1
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