-
1
-
-
85063240542
-
Peptidylarginine deiminases 2 and 4 modulate innate and adaptive immune responses in TLR-7-dependent lupus
-
Y. Liu et al., Peptidylarginine deiminases 2 and 4 modulate innate and adaptive immune responses in TLR-7-dependent lupus. JCI Insight 3, e124729 (2018).
-
(2018)
JCI Insight
, vol.3
, pp. e124729
-
-
Liu, Y.1
-
2
-
-
85052942293
-
LincRNA H19 protects from dietary obesity by constraining expression of monoallelic genes in brown fat
-
E. Schmidt et al., LincRNA H19 protects from dietary obesity by constraining expression of monoallelic genes in brown fat. Nat. Commun. 9, 3622 (2018).
-
(2018)
Nat. Commun.
, vol.9
, pp. 3622
-
-
Schmidt, E.1
-
3
-
-
74949137952
-
A single-base resolution map of an archaeal transcriptome
-
O. Wurtzel et al., A single-base resolution map of an archaeal transcriptome. Genome Res. 20, 133–141 (2010).
-
(2010)
Genome Res
, vol.20
, pp. 133-141
-
-
Wurtzel, O.1
-
4
-
-
85060544242
-
Comparative analysis of developmental transcriptome maps of Arabidopsis thaliana and Solanum lycopersicum
-
A. A. Penin, A. V. Klepikova, A. S. Kasianov, E. S. Gerasimov, M. D. Logacheva, Comparative analysis of developmental transcriptome maps of Arabidopsis thaliana and Solanum lycopersicum. Genes (Basel) 10, E50 (2019).
-
(2019)
Genes (Basel)
, vol.10
, pp. E50
-
-
Penin, A.A.1
Klepikova, A.V.2
Kasianov, A.S.3
Gerasimov, E.S.4
Logacheva, M.D.5
-
5
-
-
85068956852
-
Laser capture microdissection and RNA-seq analysis: High sensitivity approaches to explain histopathological heterogeneity in human glioblastoma FFPE archived tissues
-
P. Civita et al., Laser capture microdissection and RNA-seq analysis: High sensitivity approaches to explain histopathological heterogeneity in human glioblastoma FFPE archived tissues. Front. Oncol. 9, 482 (2019).
-
(2019)
Front. Oncol.
, vol.9
, pp. 482
-
-
Civita, P.1
-
6
-
-
84893905629
-
Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types
-
D. A. Jaitin et al., Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types. Science 343, 776–779 (2014).
-
(2014)
Science
, vol.343
, pp. 776-779
-
-
Jaitin, D.A.1
-
7
-
-
85052605372
-
Single-cell RNA-seq uncovers dynamic processes and critical regulators in mouse spermatogenesis
-
Y. Chen et al., Single-cell RNA-seq uncovers dynamic processes and critical regulators in mouse spermatogenesis. Cell Res. 28, 879–896 (2018).
-
(2018)
Cell Res
, vol.28
, pp. 879-896
-
-
Chen, Y.1
-
8
-
-
85054422207
-
Single-cell RNA sequencing analysis reveals sequential cell fate transition during human spermatogenesis
-
e4
-
M. Wang et al., Single-cell RNA sequencing analysis reveals sequential cell fate transition during human spermatogenesis. Cell Stem Cell 23, 599–614.e4 (2018).
-
(2018)
Cell Stem Cell
, vol.23
, pp. 599-614
-
-
Wang, M.1
-
9
-
-
85040671026
-
Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing
-
H. Hochgerner, A. Zeisel, P. Lönnerberg, S. Linnarsson, Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing. Nat. Neurosci. 21, 290–299 (2018).
-
(2018)
Nat. Neurosci.
, vol.21
, pp. 290-299
-
-
Hochgerner, H.1
Zeisel, A.2
Lönnerberg, P.3
Linnarsson, S.4
-
10
-
-
0021016329
-
A simple and very efficient method for generating cDNA libraries
-
U. Gubler, B. J. Hoffman, A simple and very efficient method for generating cDNA libraries. Gene 25, 263–269 (1983).
-
(1983)
Gene
, vol.25
, pp. 263-269
-
-
Gubler, U.1
Hoffman, B.J.2
-
11
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
A. Mortazavi, B. A. Williams, K. McCue, L. Schaeffer, B. Wold, Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 5, 621–628 (2008).
-
(2008)
Nat. Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
12
-
-
78649449778
-
A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing
-
P. Cui et al., A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing. Genomics 96, 259–265 (2010).
-
(2010)
Genomics
, vol.96
, pp. 259-265
-
-
Cui, P.1
-
13
-
-
46249103973
-
Stem cell transcriptome profiling via massive-scale mRNA sequencing
-
N. Cloonan et al., Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat. Methods 5, 613–619 (2008).
-
(2008)
Nat. Methods
, vol.5
, pp. 613-619
-
-
Cloonan, N.1
-
14
-
-
69549112743
-
Digital transcriptome profiling using selective hexamer priming for cDNA synthesis
-
C. D. Armour et al., Digital transcriptome profiling using selective hexamer priming for cDNA synthesis. Nat. Methods 6, 647–649 (2009).
-
(2009)
Nat. Methods
, vol.6
, pp. 647-649
-
-
Armour, C.D.1
-
15
-
-
70350653808
-
Transcriptome analysis by strand-specific sequencing of complementary DNA
-
D. Parkhomchuk et al., Transcriptome analysis by strand-specific sequencing of complementary DNA. Nucleic Acids Res. 37, e123 (2009).
-
(2009)
Nucleic Acids Res
, vol.37
, pp. e123
-
-
Parkhomchuk, D.1
-
16
-
-
67349146589
-
MRNA-Seq whole-transcriptome analysis of a single cell
-
F. Tang et al., mRNA-Seq whole-transcriptome analysis of a single cell. Nat. Methods 6, 377–382 (2009).
-
(2009)
Nat. Methods
, vol.6
, pp. 377-382
-
-
Tang, F.1
-
17
-
-
84891677425
-
Full-length RNA-seq from single cells using Smart-seq2
-
S. Picelli et al., Full-length RNA-seq from single cells using Smart-seq2. Nat. Protoc. 9, 171–181 (2014).
-
(2014)
Nat. Protoc.
, vol.9
, pp. 171-181
-
-
Picelli, S.1
-
18
-
-
84964452502
-
Cel-Seq2: Sensitive highly-multiplexed single-cell RNA-seq
-
T. Hashimshony et al., CEL-Seq2: Sensitive highly-multiplexed single-cell RNA-seq. Genome Biol. 17, 77 (2016).
-
(2016)
Genome Biol
, vol.17
, pp. 77
-
-
Hashimshony, T.1
-
19
-
-
85020717353
-
Single cell total RNA sequencing through isothermal amplification in picoliter-droplet emulsion
-
Y. Fu, H. Chen, L. Liu, Y. Huang, Single cell total RNA sequencing through isothermal amplification in picoliter-droplet emulsion. Anal. Chem. 88, 10795–10799 (2016).
-
(2016)
Anal. Chem.
, vol.88
, pp. 10795-10799
-
-
Fu, Y.1
Chen, H.2
Liu, L.3
Huang, Y.4
-
20
-
-
85009446777
-
Massively parallel digital transcriptional profiling of single cells
-
G. X. Zheng et al., Massively parallel digital transcriptional profiling of single cells. Nat. Commun. 8, 14049 (2017).
-
(2017)
Nat. Commun.
, vol.8
, pp. 14049
-
-
Zheng, G.X.1
-
21
-
-
85012271992
-
Seq-well: Portable, low-cost RNA sequencing of single cells at high throughput
-
T. M. Gierahn et al., Seq-Well: Portable, low-cost RNA sequencing of single cells at high throughput. Nat. Methods 14, 395–398 (2017).
-
(2017)
Nat. Methods
, vol.14
, pp. 395-398
-
-
Gierahn, T.M.1
-
22
-
-
85028303209
-
Comprehensive single-cell transcriptional profiling of a multicellular organism
-
J. Cao et al., Comprehensive single-cell transcriptional profiling of a multicellular organism. Science 357, 661–667 (2017).
-
(2017)
Science
, vol.357
, pp. 661-667
-
-
Cao, J.1
-
23
-
-
85044434871
-
Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding
-
A. B. Rosenberg et al., Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding. Science 360, 176–182 (2018).
-
(2018)
Science
, vol.360
, pp. 176-182
-
-
Rosenberg, A.B.1
-
24
-
-
85055817239
-
A single-cell sequencing guide for immunologists
-
P. See, J. Lum, J. Chen, F. Ginhoux, A single-cell sequencing guide for immunologists. Front. Immunol. 9, 2425 (2018).
-
(2018)
Front. Immunol.
, vol.9
, pp. 2425
-
-
See, P.1
Lum, J.2
Chen, J.3
Ginhoux, F.4
-
26
-
-
78649773164
-
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
-
A. Adey et al., Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition. Genome Biol. 11, R119 (2010).
-
(2010)
Genome Biol
, vol.11
, pp. R119
-
-
Adey, A.1
-
27
-
-
84913593681
-
Tn5 transposase and tagmentation procedures for massively scaled sequencing projects
-
S. Picelli et al., Tn5 transposase and tagmentation procedures for massively scaled sequencing projects. Genome Res. 24, 2033–2040 (2014).
-
(2014)
Genome Res
, vol.24
, pp. 2033-2040
-
-
Picelli, S.1
-
28
-
-
84888877924
-
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
-
J. D. Buenrostro, P. G. Giresi, L. C. Zaba, H. Y. Chang, W. J. Greenleaf, Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nat. Methods 10, 1213–1218 (2013).
-
(2013)
Nat. Methods
, vol.10
, pp. 1213-1218
-
-
Buenrostro, J.D.1
Giresi, P.G.2
Zaba, L.C.3
Chang, H.Y.4
Greenleaf, W.J.5
-
29
-
-
85018477462
-
Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI)
-
C. Chen et al., Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI). Science 356, 189–194 (2017).
-
(2017)
Science
, vol.356
, pp. 189-194
-
-
Chen, C.1
-
30
-
-
85054967098
-
Submegabase copy number variations arise during cerebral cortical neurogenesis as revealed by single-cell whole-genome sequencing
-
S. Rohrback et al., Submegabase copy number variations arise during cerebral cortical neurogenesis as revealed by single-cell whole-genome sequencing. Proc. Natl. Acad. Sci. U.S.A. 115, 10804–10809 (2018).
-
(2018)
Proc. Natl. Acad. Sci. U.S.A.
, vol.115
, pp. 10804-10809
-
-
Rohrback, S.1
-
31
-
-
85052629902
-
Three-dimensional genome structures of single diploid human cells
-
L. Tan, D. Xing, C. H. Chang, H. Li, X. S. Xie, Three-dimensional genome structures of single diploid human cells. Science 361, 924–928 (2018).
-
(2018)
Science
, vol.361
, pp. 924-928
-
-
Tan, L.1
Xing, D.2
Chang, C.H.3
Li, H.4
Xie, X.S.5
-
32
-
-
85052696128
-
Trac-looping measures genome structure and chromatin accessibility
-
B. Lai et al., Trac-looping measures genome structure and chromatin accessibility. Nat. Methods 15, 741–747 (2018).
-
(2018)
Nat. Methods
, vol.15
, pp. 741-747
-
-
Lai, B.1
-
33
-
-
84855331824
-
Transposase mediated construction of RNA-seq libraries
-
J. Gertz et al., Transposase mediated construction of RNA-seq libraries. Genome Res. 22, 134–141 (2012).
-
(2012)
Genome Res
, vol.22
, pp. 134-141
-
-
Gertz, J.1
-
34
-
-
84866770459
-
A simple and novel method for RNA-seq library preparation of single cell cDNA analysis by hyperactive Tn5 transposase
-
S. Brouilette et al., A simple and novel method for RNA-seq library preparation of single cell cDNA analysis by hyperactive Tn5 transposase. Dev. Dyn. 241, 1584–1590 (2012).
-
(2012)
Dev. Dyn.
, vol.241
, pp. 1584-1590
-
-
Brouilette, S.1
-
35
-
-
84899011562
-
The RNase H-like superfamily: New members, comparative structural analysis and evolutionary classification
-
K. A. Majorek et al., The RNase H-like superfamily: New members, comparative structural analysis and evolutionary classification. Nucleic Acids Res. 42, 4160–4179 (2014).
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 4160-4179
-
-
Majorek, K.A.1
-
36
-
-
0034616993
-
Three-dimensional structure of the Tn5 synaptic complex transposition intermediate
-
D. R. Davies, I. Y. Goryshin, W. S. Reznikoff, I. Rayment, Three-dimensional structure of the Tn5 synaptic complex transposition intermediate. Science 289, 77–85 (2000).
-
(2000)
Science
, vol.289
, pp. 77-85
-
-
Davies, D.R.1
Goryshin, I.Y.2
Reznikoff, W.S.3
Rayment, I.4
-
38
-
-
0037449821
-
Tn5 transposase active site mutations suggest position of donor backbone DNA in synaptic complex
-
G. Peterson, W. Reznikoff, Tn5 transposase active site mutations suggest position of donor backbone DNA in synaptic complex. J. Biol. Chem. 278, 1904–1909 (2003).
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 1904-1909
-
-
Peterson, G.1
Reznikoff, W.2
-
39
-
-
21244451435
-
Crystal structures of RNase H bound to an RNA/DNA hybrid: Substrate specificity and metal-dependent catalysis
-
M. Nowotny, S. A. Gaidamakov, R. J. Crouch, W. Yang, Crystal structures of RNase H bound to an RNA/DNA hybrid: Substrate specificity and metal-dependent catalysis. Cell 121, 1005–1016 (2005).
-
(2005)
Cell
, vol.121
, pp. 1005-1016
-
-
Nowotny, M.1
Gaidamakov, S.A.2
Crouch, R.J.3
Yang, W.4
-
40
-
-
33748638618
-
Crystal structure of the moloney murine leukemia virus RNase H domain
-
D. Lim et al., Crystal structure of the moloney murine leukemia virus RNase H domain. J. Virol. 80, 8379–8389 (2006).
-
(2006)
J. Virol.
, vol.80
, pp. 8379-8389
-
-
Lim, D.1
-
41
-
-
84913593681
-
Tn5 transposase and tagmentation procedures for massively scaled sequencing projects
-
S. Picelli et al., Tn5 transposase and tagmentation procedures for massively scaled sequencing projects. Genome Res. 24, 2033–2040 (2014).
-
(2014)
Genome Res
, vol.24
, pp. 2033-2040
-
-
Picelli, S.1
|