-
2
-
-
84891707105
-
Intravascular staining for discrimination of vascular and tissue leukocytes
-
Anderson, K.G., K. Mayer-Barber, H. Sung, L. Beura, B.R. James, J.J. Taylor, L. Qunaj, T.S. Griffith, V. Vezys, D.L. Barber, and D. Masopust. 2014. Intravascular staining for discrimination of vascular and tissue leukocytes. Nat. Protoc. 9:209–222. https://doi.org/10.1038/nprot.2014.005
-
(2014)
Nat. Protoc.
, vol.9
, pp. 209-222
-
-
Anderson, K.G.1
Mayer-Barber, K.2
Sung, H.3
Beura, L.4
James, B.R.5
Taylor, J.J.6
Qunaj, L.7
Griffith, T.S.8
Vezys, V.9
Barber, D.L.10
Masopust, D.11
-
4
-
-
85030994112
-
Interconnected subsets of memory follicular helper t cells have different effector functions
-
Asrir, A., M. Aloulou, M. Gador, C. Pérals, and N. Fazilleau. 2017. Interconnected subsets of memory follicular helper T cells have different effector functions. Nat. Commun. 8:847. https://doi.org/10.1038/s41467-017-00843-7
-
(2017)
Nat. Commun.
, vol.8
, pp. 847
-
-
Asrir, A.1
Aloulou, M.2
Gador, M.3
Pérals, C.4
Fazilleau, N.5
-
5
-
-
85054750671
-
Optimal protection against salmonella infection requires noncirculating memory
-
Benoun, J.M., N.G. Peres, N. Wang, O.H. Pham, V.L. Rudisill, Z.N. Fogassy, P. G. Whitney, D. Fernandez-Ruiz, T. Gebhardt, Q.-M. Pham, et al. 2018. Optimal protection against Salmonella infection requires noncirculating memory. Proc. Natl. Acad. Sci. USA. 115:10416–10421. https://doi.org/10.1073/pnas.1808339115
-
(2018)
Proc. Natl. Acad. Sci. USA.
, vol.115
, pp. 10416-10421
-
-
Benoun, J.M.1
Peres, N.G.2
Wang, N.3
Pham, O.H.4
Rudisill, V.L.5
Fogassy, Z.N.6
Whitney, P.G.7
Fernandez-Ruiz, D.8
Gebhardt, T.9
Pham, Q.-M.10
-
6
-
-
84929161091
-
Lymphocytic choriomeningitis virus persistence promotes effector-like memory differentiation and enhances mucosal t cell distribution
-
Beura, L.K., K.G. Anderson, J.M. Schenkel, J.J. Locquiao, K.A. Fraser, V. Vezys, M. Pepper, and D. Masopust. 2015. Lymphocytic choriomeningitis virus persistence promotes effector-like memory differentiation and enhances mucosal T cell distribution. J. Leukoc. Biol. 97:217–225. https://doi.org/10.1189/jlb.1HI0314-154R
-
(2015)
J. Leukoc. Biol.
, vol.97
, pp. 217-225
-
-
Beura, L.K.1
Anderson, K.G.2
Schenkel, J.M.3
Locquiao, J.J.4
Fraser, K.A.5
Vezys, V.6
Pepper, M.7
Masopust, D.8
-
7
-
-
84964918435
-
Normalizing the environment recapitulates adult human immune traits in laboratory mice
-
Beura, L.K., S.E. Hamilton, K. Bi, J.M. Schenkel, O.A. Odumade, K.A. Casey, E. A. Thompson, K.A. Fraser, P.C. Rosato, A. Filali-Mouhim, et al. 2016. Normalizing the environment recapitulates adult human immune traits in laboratory mice. Nature. 532:512–516. https://doi.org/10.1038/nature17655
-
(2016)
Nature
, vol.532
, pp. 512-516
-
-
Beura, L.K.1
Hamilton, S.E.2
Bi, K.3
Schenkel, J.M.4
Odumade, O.A.5
Casey, K.A.6
Thompson, E.A.7
Fraser, K.A.8
Rosato, P.C.9
Filali-Mouhim, A.10
-
8
-
-
85044846530
-
T cells in nonlymphoid tissues give rise to lymph-node-resident memory t cells
-
Beura, L.K., S. Wijeyesinghe, E.A. Thompson, M.G. Macchietto, P.C. Rosato, M.J. Pierson, J.M. Schenkel, J.S. Mitchell, V. Vezys, B.T. Fife, et al. 2018. T Cells in Nonlymphoid Tissues Give Rise to Lymph-Node-Resident Memory T Cells. Immunity. 48:327–338.e5. https://doi.org/10.1016/j.immuni.2018.01.015
-
(2018)
Immunity
, vol.48
, pp. 327-338.e5
-
-
Beura, L.K.1
Wijeyesinghe, S.2
Thompson, E.A.3
Macchietto, M.G.4
Rosato, P.C.5
Pierson, M.J.6
Schenkel, J.M.7
Mitchell, J.S.8
Vezys, V.9
Fife, B.T.10
-
9
-
-
84905049901
-
Trimmomatic: A flexible trimmer for illumina sequence data
-
Bolger, A.M., M. Lohse, and B. Usadel. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30:2114–2120. https://doi.org/10.1093/bioinformatics/btu170
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
10
-
-
84872745270
-
Recirculating memory t cells are a unique subset of CD4+ t cells with a distinct phenotype and migratory pattern
-
Bromley, S.K., S. Yan, M. Tomura, O. Kanagawa, and A.D. Luster. 2013. Recirculating memory T cells are a unique subset of CD4+ T cells with a distinct phenotype and migratory pattern. J. Immunol. 190:970–976. https://doi.org/10.4049/jimmunol.1202805
-
(2013)
J. Immunol.
, vol.190
, pp. 970-976
-
-
Bromley, S.K.1
Yan, S.2
Tomura, M.3
Kanagawa, O.4
Luster, A.D.5
-
11
-
-
84932180505
-
Tissue-resident memory t cells and fixed immune surveillance in nonlymphoid organs
-
Carbone, F.R. 2015. Tissue-Resident Memory T Cells and Fixed Immune Surveillance in Nonlymphoid Organs. J. Immunol. 195:17–22. https://doi.org/10.4049/jimmunol.1500515
-
(2015)
J. Immunol.
, vol.195
, pp. 17-22
-
-
Carbone, F.R.1
-
12
-
-
79251555660
-
Venndiagram: A package for the generation of highly-customizable venn and euler diagrams in r
-
Chen, H., and P.C. Boutros. 2011. VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R. BMC Bioinformatics. 12:35. https://doi.org/10.1186/1471-2105-12-35
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 35
-
-
Chen, H.1
Boutros, P.C.2
-
13
-
-
85045842961
-
Clonal CD4+ t cells in the HIV-1 latent reservoir display a distinct gene profile upon reactivation
-
Cohn, L.B., I.T. da Silva, R. Valieris, A.S. Huang, J.C.C. Lorenzi, Y.Z. Cohen, J. A. Pai, A.L. Butler, M. Caskey, M. Jankovic, and M.C. Nussenzweig. 2018. Clonal CD4+ T cells in the HIV-1 latent reservoir display a distinct gene profile upon reactivation. Nat. Med. 24:604–609. https://doi.org/10.1038/s41591-018-0017-7
-
(2018)
Nat. Med.
, vol.24
, pp. 604-609
-
-
Cohn, L.B.1
da Silva, I.T.2
Valieris, R.3
Huang, A.S.4
Lorenzi, J.C.C.5
Cohen, Y.Z.6
Pai, J.A.7
Butler, A.L.8
Caskey, M.9
Jankovic, M.10
Nussenzweig, M.C.11
-
14
-
-
84968690743
-
Skin CD4(+) memory t cells exhibit combined cluster-mediated retention and equilibration with the circulation
-
Collins, N., X. Jiang, A. Zaid, B.L. Macleod, J. Li, C.O. Park, A. Haque, S. Bedoui, W.R. Heath, S.N. Mueller, et al. 2016. Skin CD4(+) memory T cells exhibit combined cluster-mediated retention and equilibration with the circulation. Nat. Commun. 7:11514. https://doi.org/10.1038/ncomms11514
-
(2016)
Nat. Commun.
, vol.7
, pp. 11514
-
-
Collins, N.1
Jiang, X.2
Zaid, A.3
Macleod, B.L.4
Li, J.5
Park, C.O.6
Haque, A.7
Bedoui, S.8
Heath, W.R.9
Mueller, S.N.10
-
15
-
-
62849126473
-
The function of follicular helper t cells is regulated by the strength of t cell antigen receptor binding
-
Fazilleau, N., L.J. McHeyzer-Williams, H. Rosen, and M.G. McHeyzer-Williams. 2009. The function of follicular helper T cells is regulated by the strength of T cell antigen receptor binding. Nat. Immunol. 10:375–384. https://doi.org/10.1038/ni.1704
-
(2009)
Nat. Immunol.
, vol.10
, pp. 375-384
-
-
Fazilleau, N.1
McHeyzer-Williams, L.J.2
Rosen, H.3
McHeyzer-Williams, M.G.4
-
16
-
-
84994876821
-
Liver-resident memory CD8+ t cells form a front-line defense against malaria liver-stage infection
-
Fernandez-Ruiz, D., W.Y. Ng, L.E. Holz, J.Z. Ma, A. Zaid, Y.C. Wong, L.S. Lau, V. Mollard, A. Cozijnsen, N. Collins, et al. 2016. Liver-Resident Memory CD8+ T Cells Form a Front-Line Defense against Malaria Liver-Stage Infection. Immunity. 45:889–902. https://doi.org/10.1016/j.immuni.2016.08.011
-
(2016)
Immunity
, vol.45
, pp. 889-902
-
-
Fernandez-Ruiz, D.1
Ng, W.Y.2
Holz, L.E.3
Ma, J.Z.4
Zaid, A.5
Wong, Y.C.6
Lau, L.S.7
Mollard, V.8
Cozijnsen, A.9
Collins, N.10
-
17
-
-
31044433313
-
Preferential migration of effector CD8+ t cells into the interstitium of the normal lung
-
Galkina, E., J. Thatte, V. Dabak, M.B. Williams, K. Ley, and T.J. Braciale. 2005. Preferential migration of effector CD8+ T cells into the interstitium of the normal lung. J. Clin. Invest. 115:3473–3483. https://doi.org/10.1172/JCI24482
-
(2005)
J. Clin. Invest.
, vol.115
, pp. 3473-3483
-
-
Galkina, E.1
Thatte, J.2
Dabak, V.3
Williams, M.B.4
Ley, K.5
Braciale, T.J.6
-
18
-
-
80052555420
-
Different patterns of peripheral migration by memory CD4+ and CD8+ t cells
-
Gebhardt, T., P.G. Whitney, A. Zaid, L.K. Mackay, A.G. Brooks, W.R. Heath, F. R. Carbone, and S.N. Mueller. 2011. Different patterns of peripheral migration by memory CD4+ and CD8+ T cells. Nature. 477:216–219. https://doi.org/10.1038/nature10339
-
(2011)
Nature
, vol.477
, pp. 216-219
-
-
Gebhardt, T.1
Whitney, P.G.2
Zaid, A.3
Mackay, L.K.4
Brooks, A.G.5
Heath, W.R.6
Carbone, F.R.7
Mueller, S.N.8
-
19
-
-
85044189295
-
Blocking the ART2.2/P2X7-system is essential to avoid a detrimental bias in functional CD4 t cell studies
-
Georgiev, H., I. Ravens, G. Papadogianni, B. Malissen, R. Förster, and G. Bernhardt. 2018. Blocking the ART2.2/P2X7-system is essential to avoid a detrimental bias in functional CD4 T cell studies. Eur. J. Immunol. 48: 1078–1081. https://doi.org/10.1002/eji.201747420
-
(2018)
Eur. J. Immunol.
, vol.48
, pp. 1078-1081
-
-
Georgiev, H.1
Ravens, I.2
Papadogianni, G.3
Malissen, B.4
Förster, R.5
Bernhardt, G.6
-
20
-
-
84943551317
-
Skin-resident memory CD4+ t cells enhance protection against leishmania major infection
-
Glennie, N.D., V.A. Yeramilli, D.P. Beiting, S.W. Volk, C.T. Weaver, and P. Scott. 2015. Skin-resident memory CD4+ T cells enhance protection against Leishmania major infection. J. Exp. Med. 212:1405–1414. https://doi.org/10.1084/jem.20142101
-
(2015)
J. Exp. Med.
, vol.212
, pp. 1405-1414
-
-
Glennie, N.D.1
Yeramilli, V.A.2
Beiting, D.P.3
Volk, S.W.4
Weaver, C.T.5
Scott, P.6
-
21
-
-
84992187637
-
Complex heatmaps reveal patterns and correlations in multidimensional genomic data
-
Gu, Z., R. Eils, and M. Schlesner. 2016. Complex heatmaps reveal patterns and correlations in multidimensional genomic data. Bioinformatics. 32: 2847–2849. https://doi.org/10.1093/bioinformatics/btw313
-
(2016)
Bioinformatics
, vol.32
, pp. 2847-2849
-
-
Gu, Z.1
Eils, R.2
Schlesner, M.3
-
22
-
-
84876780521
-
Distinct memory CD4+ t cells with commitment to t follicular helper- and t helper 1-cell lineages are generated after acute viral infection
-
Hale, J.S., B. Youngblood, D.R. Latner, A.U.R. Mohammed, L. Ye, R.S. Akondy, T. Wu, S.S. Iyer, and R. Ahmed. 2013. Distinct memory CD4+ T cells with commitment to T follicular helper- and T helper 1-cell lineages are generated after acute viral infection. Immunity. 38:805–817. https://doi.org/10.1016/j.immuni.2013.02.020
-
(2013)
Immunity
, vol.38
, pp. 805-817
-
-
Hale, J.S.1
Youngblood, B.2
Latner, D.R.3
Mohammed, A.U.R.4
Ye, L.5
Akondy, R.S.6
Wu, T.7
Iyer, S.S.8
Ahmed, R.9
-
23
-
-
85031318316
-
IL-2 is required for the generation of viral-specific CD4+ th1 tissue-resident memory cells and b cells are essential for maintenance in the lung
-
Hondowicz, B.D., K.S. Kim, M.J. Ruterbusch, G.J. Keitany, and M. Pepper. 2018. IL-2 is required for the generation of viral-specific CD4+ Th1 tissue-resident memory cells and B cells are essential for maintenance in the lung. Eur. J. Immunol. 48:80–86. https://doi.org/10.1002/eji.201746928
-
(2018)
Eur. J. Immunol.
, vol.48
, pp. 80-86
-
-
Hondowicz, B.D.1
Kim, K.S.2
Ruterbusch, M.J.3
Keitany, G.J.4
Pepper, M.5
-
24
-
-
84907479665
-
T cell memory. A local macrophage chemokine network sustains protective tissue-resident memory CD4 t cells
-
Iijima, N., and A. Iwasaki. 2014. T cell memory. A local macrophage chemokine network sustains protective tissue-resident memory CD4 T cells. Science. 346:93–98. https://doi.org/10.1126/science.1257530
-
(2014)
Science
, vol.346
, pp. 93-98
-
-
Iijima, N.1
Iwasaki, A.2
-
25
-
-
84926519013
-
Hisat: A fast spliced aligner with low memory requirements
-
Kim, D., B. Langmead, and S.L. Salzberg. 2015. HISAT: a fast spliced aligner with low memory requirements. Nat. Methods. 12:357–360. https://doi.org/10.1038/nmeth.3317
-
(2015)
Nat. Methods.
, vol.12
, pp. 357-360
-
-
Kim, D.1
Langmead, B.2
Salzberg, S.L.3
-
26
-
-
85029578875
-
Human tissue-resident memory t cells are defined by core transcriptional and functional signatures in lymphoid and mucosal sites
-
Kumar, B.V., W. Ma, M. Miron, T. Granot, R.S. Guyer, D.J. Carpenter, T. Senda, X. Sun, S.-H. Ho, H. Lerner, et al. 2017. Human Tissue-Resident Memory T Cells Are Defined by Core Transcriptional and Functional Signatures in Lymphoid and Mucosal Sites. Cell Reports. 20:2921–2934. https://doi.org/10.1016/j.celrep.2017.08.078
-
(2017)
Cell Reports
, vol.20
, pp. 2921-2934
-
-
Kumar, B.V.1
Ma, W.2
Miron, M.3
Granot, T.4
Guyer, R.S.5
Carpenter, D.J.6
Senda, T.7
Sun, X.8
Ho, S.-H.9
Lerner, H.10
-
27
-
-
68549104404
-
The sequence Alignment/Map format and SAMtools
-
Li, H., B. Handsaker, A. Wysoker, T. Fennell, J. Ruan, N. Homer, G. Marth, G. Abecasis, and R. Durbin. 1000 Genome Project Data Processing Subgroup. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 25:2078–2079. https://doi.org/10.1093/bioinformatics/btp352
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
28
-
-
84897397058
-
Featurecounts: An efficient general purpose program for assigning sequence reads to genomic features
-
Liao, Y., G.K. Smyth, and W. Shi. 2014. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics. 30:923–930. https://doi.org/10.1093/bioinformatics/btt656
-
(2014)
Bioinformatics
, vol.30
, pp. 923-930
-
-
Liao, Y.1
Smyth, G.K.2
Shi, W.3
-
29
-
-
84888008030
-
The developmental pathway for CD103(+)CD8+ tissue-resident memory t cells of skin
-
Mackay, L.K., A. Rahimpour, J.Z. Ma, N. Collins, A.T. Stock, M.-L. Hafon, J. Vega-Ramos, P. Lauzurica, S.N. Mueller, T. Stefanovic, et al. 2013. The developmental pathway for CD103(+)CD8+ tissue-resident memory T cells of skin. Nat. Immunol. 14:1294–1301. https://doi.org/10.1038/ni.2744
-
(2013)
Nat. Immunol.
, vol.14
, pp. 1294-1301
-
-
Mackay, L.K.1
Rahimpour, A.2
Ma, J.Z.3
Collins, N.4
Stock, A.T.5
Hafon, M.-L.6
Vega-Ramos, J.7
Lauzurica, P.8
Mueller, S.N.9
Stefanovic, T.10
-
30
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin, M. 2011. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.journal. 17:10–12. https://doi.org/10.14806/ej.17.1.200
-
(2011)
EMBnet.Journal.
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
31
-
-
3142590367
-
Peripheral CD4(+)CD8(+) t cells are differentiated effector memory cells with antiviral functions
-
Nascimbeni, M., E.-C. Shin, L. Chiriboga, D.E. Kleiner, and B. Rehermann. 2004. Peripheral CD4(+)CD8(+) T cells are differentiated effector memory cells with antiviral functions. Blood. 104:478–486. https://doi.org/10.1182/blood-2003-12-4395
-
(2004)
Blood
, vol.104
, pp. 478-486
-
-
Nascimbeni, M.1
Shin, E.-C.2
Chiriboga, L.3
Kleiner, D.E.4
Rehermann, B.5
-
32
-
-
85048028902
-
Trigger-happy resident memory CD4+ t cells inhabit the human lungs
-
Oja, A.E., B. Piet, C. Helbig, R. Stark, D. van der Zwan, H. Blaauwgeers, E.B.M. Remmerswaal, D. Amsen, R.E. Jonkers, P.D. Moerland, et al. 2018. Trigger-happy resident memory CD4+ T cells inhabit the human lungs. Mucosal Immunol. 11:654–667. https://doi.org/10.1038/mi.2017.94
-
(2018)
Mucosal Immunol
, vol.11
, pp. 654-667
-
-
Oja, A.E.1
Piet, B.2
Helbig, C.3
Stark, R.4
van der Zwan, D.5
Blaauwgeers, H.6
Remmerswaal, E.B.M.7
Amsen, D.8
Jonkers, R.E.9
Moerland, P.D.10
-
33
-
-
85037626777
-
H17 resident memory t-cell population to candida albicans after skin infection
-
H17 resident memory T-cell population to Candida albicans after skin infection. J. Allergy Clin. Immunol. 142: 647–662. https://doi.org/10.1016/j.jaci.2017.09.042
-
(2018)
J. Allergy Clin. Immunol.
, vol.142
, pp. 647-662
-
-
Park, C.O.1
Fu, X.2
Jiang, X.3
Pan, Y.4
Teague, J.E.5
Collins, N.6
Tian, T.7
O’Malley, J.T.8
Emerson, R.O.9
Kim, J.H.10
-
34
-
-
80755172184
-
Opposing signals from the bcl6 transcription factor and the interleukin-2 receptor generate t helper 1 central and effector memory cells
-
Pepper, M., A.J. Pagán, B.Z. Igyártó, J.J. Taylor, and M.K. Jenkins. 2011. Opposing signals from the Bcl6 transcription factor and the interleukin-2 receptor generate T helper 1 central and effector memory cells. Immunity. 35:583–595. https://doi.org/10.1016/j.immuni.2011.09.009
-
(2011)
Immunity
, vol.35
, pp. 583-595
-
-
Pepper, M.1
Pagán, A.J.2
Igyártó, B.Z.3
Taylor, J.J.4
Jenkins, M.K.5
-
35
-
-
36448981743
-
Moderated statistical tests for assessing differences in tag abundance
-
Robinson, M.D., and G.K. Smyth. 2007. Moderated statistical tests for assessing differences in tag abundance. Bioinformatics. 23:2881–2887. https://doi.org/10.1093/bioinformatics/btm453
-
(2007)
Bioinformatics
, vol.23
, pp. 2881-2887
-
-
Robinson, M.D.1
Smyth, G.K.2
-
36
-
-
75249087100
-
Edger: A bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M.D., D.J. McCarthy, and G.K. Smyth. 2010. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics. 26:139–140. https://doi.org/10.1093/bioinformatics/btp616
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
37
-
-
85014545615
-
Differentiation of distinct long-lived memory CD4 t cells in intestinal tissues after oral listeria monocytogenes infection
-
Romagnoli, P.A., H.H. Fu, Z. Qiu, C. Khairallah, Q.M. Pham, L. Puddington, K. M. Khanna, L. Lefrançois, and B.S. Sheridan. 2017. Differentiation of distinct long-lived memory CD4 T cells in intestinal tissues after oral Listeria monocytogenes infection. Mucosal Immunol. 10:520–530. https://doi.org/10.1038/mi.2016.66
-
(2017)
Mucosal Immunol
, vol.10
, pp. 520-530
-
-
Romagnoli, P.A.1
Fu, H.H.2
Qiu, Z.3
Khairallah, C.4
Pham, Q.M.5
Puddington, L.6
Khanna, K.M.7
Lefrançois, L.8
Sheridan, B.S.9
-
38
-
-
84872772721
-
Distribution and compartmentalization of human circulating and tissue-resident memory t cell subsets
-
Sathaliyawala, T., M. Kubota, N. Yudanin, D. Turner, P. Camp, J.J.C. Thome, K.L. Bickham, H. Lerner, M. Goldstein, M. Sykes, et al. 2013. Distribution and compartmentalization of human circulating and tissue-resident memory T cell subsets. Immunity. 38:187–197. https://doi.org/10.1016/j.immuni.2012.09.020
-
(2013)
Immunity
, vol.38
, pp. 187-197
-
-
Sathaliyawala, T.1
Kubota, M.2
Yudanin, N.3
Turner, D.4
Camp, P.5
Thome, J.J.C.6
Bickham, K.L.7
Lerner, H.8
Goldstein, M.9
Sykes, M.10
-
39
-
-
84918506186
-
Tissue-resident memory t cells
-
Schenkel, J.M., and D. Masopust. 2014. Tissue-resident memory T cells. Immunity. 41:886–897. https://doi.org/10.1016/j.immuni.2014.12.007
-
(2014)
Immunity
, vol.41
, pp. 886-897
-
-
Schenkel, J.M.1
Masopust, D.2
-
40
-
-
84876693895
-
Sensing and alarm function of resident memory CD8+ t cells
-
Schenkel, J.M., K.A. Fraser, V. Vezys, and D. Masopust. 2013. Sensing and alarm function of resident memory CD8+ T cells. Nat. Immunol. 14: 509–513. https://doi.org/10.1038/ni.2568
-
(2013)
Nat. Immunol.
, vol.14
, pp. 509-513
-
-
Schenkel, J.M.1
Fraser, K.A.2
Vezys, V.3
Masopust, D.4
-
41
-
-
84907542588
-
T cell memory. Resident memory CD8 t cells trigger protective innate and adaptive immune responses
-
Schenkel, J.M., K.A. Fraser, L.K. Beura, K.E. Pauken, V. Vezys, and D. Masopust. 2014a. T cell memory. Resident memory CD8 T cells trigger protective innate and adaptive immune responses. Science. 346:98–101. https://doi.org/10.1126/science.1254536
-
(2014)
Science
, vol.346
, pp. 98-101
-
-
Schenkel, J.M.1
Fraser, K.A.2
Beura, L.K.3
Pauken, K.E.4
Vezys, V.5
Masopust, D.6
-
42
-
-
84897543043
-
Cutting edge: Resident memory CD8 t cells occupy frontline niches in secondary lymphoid organs
-
Schenkel, J.M., K.A. Fraser, and D. Masopust. 2014b. Cutting edge: resident memory CD8 T cells occupy frontline niches in secondary lymphoid organs. J. Immunol. 192:2961–2964. https://doi.org/10.4049/jimmunol.1400003
-
(2014)
J. Immunol.
, vol.192
, pp. 2961-2964
-
-
Schenkel, J.M.1
Fraser, K.A.2
Masopust, D.3
-
43
-
-
0041381363
-
Similarities and differences in CD4+ and CD8+ effector and memory t cell generation
-
Seder, R.A., and R. Ahmed. 2003. Similarities and differences in CD4+ and CD8+ effector and memory T cell generation. Nat. Immunol. 4:835–842. https://doi.org/10.1038/ni969
-
(2003)
Nat. Immunol.
, vol.4
, pp. 835-842
-
-
Seder, R.A.1
Ahmed, R.2
-
44
-
-
85041693230
-
Nonfollicular reactivation of bone marrow resident memory CD4 t cells in immune clusters of the bone marrow
-
Siracusa, F., M.A. McGrath, P. Maschmeyer, M. Bardua, K. Lehmann, G. Heinz, P. Durek, F.F. Heinrich, M.-F. Mashreghi, H.-D. Chang, et al. 2018. Nonfollicular reactivation of bone marrow resident memory CD4 T cells in immune clusters of the bone marrow. Proc. Natl. Acad. Sci. USA. 115:1334–1339. https://doi.org/10.1073/pnas.1715618115
-
(2018)
Proc. Natl. Acad. Sci. USA.
, vol.115
, pp. 1334-1339
-
-
Siracusa, F.1
McGrath, M.A.2
Maschmeyer, P.3
Bardua, M.4
Lehmann, K.5
Heinz, G.6
Durek, P.7
Heinrich, F.F.8
Mashreghi, M.-F.9
Chang, H.-D.10
-
45
-
-
85023759326
-
Dynamics of influenza-induced lung-resident memory t cells underlie waning heterosubtypic immunity
-
Slütter, B., N. Van Braeckel-Budimir, G. Abboud, S.M. Varga, S. Salek-Ar-dakani, and J.T. Harty. 2017. Dynamics of influenza-induced lung-resident memory T cells underlie waning heterosubtypic immunity. Sci. Immunol. 2:eaag2031. https://doi.org/10.1126/sciimmunol.aag2031
-
(2017)
Sci. Immunol.
, vol.2
, pp. eaag2031
-
-
Slütter, B.1
Van Braeckel-Budimir, N.2
Abboud, G.3
Varga, S.M.4
Salek-Ar-dakani, S.5
Harty, J.T.6
-
46
-
-
85038846817
-
Regionally compartmentalized resident memory t cells mediate naturally acquired protection against pneumococcal pneumonia
-
Smith, N.M., G.A. Wasserman, F.T. Coleman, K.L. Hilliard, K. Yamamoto, E. Lipsitz, R. Malley, H. Dooms, M.R. Jones, L.J. Quinton, and J.P. Mizgerd. 2018. Regionally compartmentalized resident memory T cells mediate naturally acquired protection against pneumococcal pneumonia. Mucosal Immunol. 11:220–235. https://doi.org/10.1038/mi.2017.43
-
(2018)
Mucosal Immunol
, vol.11
, pp. 220-235
-
-
Smith, N.M.1
Wasserman, G.A.2
Coleman, F.T.3
Hilliard, K.L.4
Yamamoto, K.5
Lipsitz, E.6
Malley, R.7
Dooms, H.8
Jones, M.R.9
Quinton, L.J.10
Mizgerd, J.P.11
-
47
-
-
84933564632
-
Vaccines. A mucosal vaccine against chlamydia trachomatis generates two waves of protective memory t cells
-
Stary, G., A. Olive, A.F. Radovic-Moreno, D. Gondek, D. Alvarez, P.A. Basto, M. Perro, V.D. Vrbanac, A.M. Tager, J. Shi, et al. 2015. VACCINES. A mucosal vaccine against Chlamydia trachomatis generates two waves of protective memory T cells. Science. 348:aaa8205. https://doi.org/10.1126/science.aaa8205
-
(2015)
Science
, vol.348
, pp. aaa8205
-
-
Stary, G.1
Olive, A.2
Radovic-Moreno, A.F.3
Gondek, D.4
Alvarez, D.5
Basto, P.A.6
Perro, M.7
Vrbanac, V.D.8
Tager, A.M.9
Shi, J.10
-
48
-
-
84928904487
-
Quantifying memory CD8 t cells reveals regionalization of immunosurveillance
-
Steinert, E.M., J.M. Schenkel, K.A. Fraser, L.K. Beura, L.S. Manlove, B.Z. Igyártó, P.J. Southern, and D. Masopust. 2015. Quantifying Memory CD8 T Cells Reveals Regionalization of Immunosurveillance. Cell. 161: 737–749. https://doi.org/10.1016/j.cell.2015.03.031
-
(2015)
Cell
, vol.161
, pp. 737-749
-
-
Steinert, E.M.1
Schenkel, J.M.2
Fraser, K.A.3
Beura, L.K.4
Manlove, L.S.5
Igyártó, B.Z.6
Southern, P.J.7
Masopust, D.8
-
49
-
-
85006106962
-
Intestinal helminth infection induces highly functional resident memory CD4+ t cells in mice
-
Steinfelder, S., S. Rausch, D. Michael, A.A. Kühl, and S. Hartmann. 2017. Intestinal helminth infection induces highly functional resident memory CD4+ T cells in mice. Eur. J. Immunol. 47:353–363. https://doi.org/10.1002/eji.201646575
-
(2017)
Eur. J. Immunol.
, vol.47
, pp. 353-363
-
-
Steinfelder, S.1
Rausch, S.2
Michael, D.3
Kühl, A.A.4
Hartmann, S.5
-
50
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian, A., P. Tamayo, V.K. Mootha, S. Mukherjee, B.L. Ebert, M.A. Gillette, A. Paulovich, S.L. Pomeroy, T.R. Golub, E.S. Lander, and J.P. Mesirov. 2005. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. USA. 102:15545–15550. https://doi.org/10.1073/pnas.0506580102
-
(2005)
Proc. Natl. Acad. Sci. USA.
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
51
-
-
57449097558
-
Homeostasis of naive and memory t cells
-
Surh, C.D., and J. Sprent. 2008. Homeostasis of naive and memory T cells. Immunity. 29:848–862. https://doi.org/10.1016/j.immuni.2008.11.002
-
(2008)
Immunity
, vol.29
, pp. 848-862
-
-
Surh, C.D.1
Sprent, J.2
-
52
-
-
85008425678
-
Specific niches for lung-resident memory CD8+ t cells at the site of tissue regeneration enable CD69-independent maintenance
-
Takamura, S., H. Yagi, Y. Hakata, C. Motozono, S.R. McMaster, T. Masumoto, M. Fujisawa, T. Chikaishi, J. Komeda, J. Itoh, et al. 2016. Specific niches for lung-resident memory CD8+ T cells at the site of tissue regeneration enable CD69-independent maintenance. J. Exp. Med. 213:3057–3073. https://doi.org/10.1084/jem.20160938
-
(2016)
J. Exp. Med.
, vol.213
, pp. 3057-3073
-
-
Takamura, S.1
Yagi, H.2
Hakata, Y.3
Motozono, C.4
McMaster, S.R.5
Masumoto, T.6
Fujisawa, M.7
Chikaishi, T.8
Komeda, J.9
Itoh, J.10
-
53
-
-
79957711140
-
CD4+ memory t cell survival
-
Taylor, J.J., and M.K. Jenkins. 2011. CD4+ memory T cell survival. Curr. Opin. Immunol. 23:319–323. https://doi.org/10.1016/j.coi.2011.03.010
-
(2011)
Curr. Opin. Immunol.
, vol.23
, pp. 319-323
-
-
Taylor, J.J.1
Jenkins, M.K.2
-
54
-
-
82755192260
-
Cutting edge: Tissue-retentive lung memory CD4 t cells mediate optimal protection to respiratory virus infection
-
Teijaro, J.R., D. Turner, Q. Pham, E.J. Wherry, L. Lefrançois, and D.L. Farber. 2011. Cutting edge: Tissue-retentive lung memory CD4 T cells mediate optimal protection to respiratory virus infection. J. Immunol. 187: 5510–5514. https://doi.org/10.4049/jimmunol.1102243
-
(2011)
J. Immunol.
, vol.187
, pp. 5510-5514
-
-
Teijaro, J.R.1
Turner, D.2
Pham, Q.3
Wherry, E.J.4
Lefrançois, L.5
Farber, D.L.6
-
55
-
-
84910105185
-
Spatial map of human t cell compartmentalization and maintenance over decades of life
-
Thome, J.J.C., N. Yudanin, Y. Ohmura, M. Kubota, B. Grinshpun, T. Sathaliyawala, T. Kato, H. Lerner, Y. Shen, and D.L. Farber. 2014. Spatial map of human T cell compartmentalization and maintenance over decades of life. Cell. 159:814–828. https://doi.org/10.1016/j.cell.2014.10.026
-
(2014)
Cell
, vol.159
, pp. 814-828
-
-
Thome, J.J.C.1
Yudanin, N.2
Ohmura, Y.3
Kubota, M.4
Grinshpun, B.5
Sathaliyawala, T.6
Kato, T.7
Lerner, H.8
Shen, Y.9
Farber, D.L.10
-
56
-
-
84962585729
-
Shortened intervals during heterologous boosting preserve memory CD8 t cell function but compromise longevity
-
Thompson, E.A., L.K. Beura, C.E. Nelson, K.G. Anderson, and V. Vezys. 2016. Shortened Intervals during Heterologous Boosting Preserve Memory CD8 T Cell Function but Compromise Longevity. J. Immunol. 196: 3054–3063. https://doi.org/10.4049/jimmunol.1501797
-
(2016)
J. Immunol.
, vol.196
, pp. 3054-3063
-
-
Thompson, E.A.1
Beura, L.K.2
Nelson, C.E.3
Anderson, K.G.4
Vezys, V.5
-
57
-
-
84899553624
-
Lung niches for the generation and maintenance of tissue-resident memory t cells
-
Turner, D.L., K.L. Bickham, J.J. Thome, C.Y. Kim, F. D’Ovidio, E.J. Wherry, and D.L. Farber. 2014. Lung niches for the generation and maintenance of tissue-resident memory T cells. Mucosal Immunol. 7:501–510. https://doi.org/10.1038/mi.2013.67
-
(2014)
Mucosal Immunol
, vol.7
, pp. 501-510
-
-
Turner, D.L.1
Bickham, K.L.2
Thome, J.J.3
Kim, C.Y.4
D’Ovidio, F.5
Wherry, E.J.6
Farber, D.L.7
-
58
-
-
85044441591
-
Biased generation and in situ activation of lung tissue-resident memory CD4 t cells in the pathogenesis of allergic asthma
-
Turner, D.L., M. Goldklang, F. Cvetkovski, D. Paik, J. Trischler, J. Barahona, M. Cao, R. Dave, N. Tanna, J.M. D’Armiento, and D.L. Farber. 2018. Biased Generation and In Situ Activation of Lung Tissue-Resident Memory CD4 T Cells in the Pathogenesis of Allergic Asthma. J. Immunol. 200:1561–1569. https://doi.org/10.4049/JIMMUNOL.1700257
-
(2018)
J. Immunol.
, vol.200
, pp. 1561-1569
-
-
Turner, D.L.1
Goldklang, M.2
Cvetkovski, F.3
Paik, D.4
Trischler, J.5
Barahona, J.6
Cao, M.7
Dave, R.8
Tanna, N.9
D’Armiento, J.M.10
Farber, D.L.11
-
59
-
-
84925250971
-
Human skin is protected by four functionally and phenotypically discrete populations of resident and recirculating memory t cells
-
Watanabe, R., A. Gehad, C. Yang, L.L. Scott, J.E. Teague, C. Schlapbach, C.P. Elco, V. Huang, T.R. Matos, T.S. Kupper, and R.A. Clark. 2015. Human skin is protected by four functionally and phenotypically discrete populations of resident and recirculating memory T cells. Sci. Transl. Med. 7:279ra39. https://doi.org/10.1126/scitranslmed.3010302
-
(2015)
Sci. Transl. Med.
, vol.7
, pp. 279ra39
-
-
Watanabe, R.1
Gehad, A.2
Yang, C.3
Scott, L.L.4
Teague, J.E.5
Schlapbach, C.6
Elco, C.P.7
Huang, V.8
Matos, T.R.9
Kupper, T.S.10
Clark, R.A.11
-
60
-
-
0037383592
-
Viral persistence alters CD8 t-cell immunodominance and tissue distribution and results in distinct stages of functional impairment
-
Wherry, E.J., J.N. Blattman, K. Murali-Krishna, R. van der Most, and R. Ahmed. 2003. Viral persistence alters CD8 T-cell immunodominance and tissue distribution and results in distinct stages of functional impairment. J. Virol. 77:4911–4927. https://doi.org/10.1128/JVI.77.8.4911-4927.2003
-
(2003)
J. Virol.
, vol.77
, pp. 4911-4927
-
-
Wherry, E.J.1
Blattman, J.N.2
Murali-Krishna, K.3
van der Most, R.4
Ahmed, R.5
-
61
-
-
85021070949
-
Lung CD4 Tissue-Resident memory t cells mediate adaptive immunity induced by previous infection of mice with bordetella pertussis
-
Wilk, M.M., A. Misiak, R.M. McManus, A.C. Allen, M.A. Lynch, and K.H.G. Mills. 2017. Lung CD4 Tissue-Resident Memory T Cells Mediate Adaptive Immunity Induced by Previous Infection of Mice with Bordetella pertussis. J. Immunol. 199:233–243. https://doi.org/10.4049/jimmunol.1602051
-
(2017)
J. Immunol.
, vol.199
, pp. 233-243
-
-
Wilk, M.M.1
Misiak, A.2
McManus, R.M.3
Allen, A.C.4
Lynch, M.A.5
Mills, K.H.G.6
-
62
-
-
84893386522
-
Lung-resident memory CD8 t cells (TRM) are indispensable for optimal cross-protection against pulmonary virus infection
-
Wu, T., Y. Hu, Y.-T. Lee, K.R. Bouchard, A. Benechet, K. Khanna, and L.S. Cauley. 2014. Lung-resident memory CD8 T cells (TRM) are indispensable for optimal cross-protection against pulmonary virus infection. J. Leukoc. Biol. 95:215–224. https://doi.org/10.1189/jlb.0313180
-
(2014)
J. Leukoc. Biol.
, vol.95
, pp. 215-224
-
-
Wu, T.1
Hu, Y.2
Lee, Y.-T.3
Bouchard, K.R.4
Benechet, A.5
Khanna, K.6
Cauley, L.S.7
-
63
-
-
84860718683
-
ClusterProfiler: An r package for comparing biological themes among gene clusters
-
Yu, G., L.-G. Wang, Y. Han, and Q.-Y. He. 2012. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS. 16: 284–287. https://doi.org/10.1089/omi.2011.0118
-
(2012)
OMICS
, vol.16
, pp. 284-287
-
-
Yu, G.1
Wang, L.-G.2
Han, Y.3
He, Q.-Y.4
|