VennDiagram: A package for the generation of highly-customizable Venn and Euler diagrams in R

BMC Bioinformatics

Volumn 12, Issue , 2011, Pages

  Chen, Hanbo ^a   Boutros, Paul C ^a  

^a ONTARIO INSTITUTE FOR CANCER RESEARCH   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATED GENERATION; EULER DIAGRAMS; FONT SIZE; HIGH DEFINITION; HIGH QUALITY; HIGH RESOLUTION; VENN DIAGRAMS; VISUAL APPEALS;

BIOINFORMATICS;

GRAPHIC METHODS;

ARTICLE; BIOLOGY; COMPUTER GRAPHICS; COMPUTER PROGRAM; METHODOLOGY; STATISTICAL ANALYSIS;

COMPUTATIONAL BIOLOGY; COMPUTER GRAPHICS; DATA INTERPRETATION, STATISTICAL; SOFTWARE;

EID: 79251555660     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-35     Document Type: Article

References (12)

1. Brown KR, Otasek D, Ali M, McGuffin MJ, Xie W, Devani B, Toch IL, Jurisica I. NAViGaTOR: Network Analysis, Visualization and Graphing Toronto. Bioinformatics 2009, 25(24):3327-3329. 10.1093/bioinformatics/btp595, 2788933, 19837718.
2. Merico D, Gfeller D, Bader GD. How to visually interpret biological data using networks. Nat Biotechnol 2009, 27(10):921-924. 10.1038/nbt.1567, 19816451.
3. Boutros PC, Okey AB. Unsupervised pattern recognition: an introduction to the whys and wherefores of clustering microarray data. Brief Bioinform 2005, 6(4):331-343. 10.1093/bib/6.4.331, 16420732.
4. Verhaak RG, Sanders MA, Bijl MA, Delwel R, Horsman S, Moorhouse MJ, van der Spek PJ, Lowenberg B, Valk PJ. HeatMapper: powerful combined visualization of gene expression profile correlations, genotypes, phenotypes and sample characteristics. BMC Bioinfo 2006, 7:337.
5. Oliveros J. Venny. An interactive tool for comparing lists with Venn Diagrams. , http://bioinfogp.cnb.csic.es/tools/venny/index.html
6. Hulsen T, de Vlieg J, Alkema W. BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams. BMC Genomics 2008, 9:488. 10.1186/1471-2164-9-488, 2584113, 18925949.
7. Kim B, Lee B, Seo J. Visualizing Set Concordance with Permutation Matrices and Fan Diagrams. Interact Comput 2007, 19(5):630-643. 10.1016/j.intcom.2007.05.004, 2717505, 19641637.
8. Kestler HA, Muller A, Kraus JM, Buchholz M, Gress TM, Liu H, Kane DW, Zeeberg BR, Weinstein JN. VennMaster: area-proportional Euler diagrams for functional GO analysis of microarrays. BMC Bioinfo 2008, 9:67.
9. Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 2004, 5(10):R80. 10.1186/gb-2004-5-10-r80, 545600, 15461798.
10. Chow S, Rodgers P. Constructing Area-Proportional Venn and Euler Diagrams with Three Circles. Euler Diagrams 2005: 2005 2005, Paris, France.
11. Edwards A. Seven-set Venn diagrams with rotational and polar symmetry. Combinatorics, Probability and Computing 1998, 7(2):149-152.
12. Schwenk A. Venn diagram for five sets. Mathematics Magazine 1984, 57(5):297-298.