-
1
-
-
34347389905
-
Three distinct modes of intron dynamics in the evolution of eukaryotes
-
DOI 10.1101/gr.6438607
-
L. Carmel, Y.I. Wolf, I.B. Rogozin, and E.V. Koonin Three distinct modes of intron dynamics in the evolution of eukaryotes Genome Res. 17 2007 1034 1044 (Pubitemid 47026350)
-
(2007)
Genome Research
, vol.17
, Issue.7
, pp. 1034-1044
-
-
Carmel, L.1
Wolf, Y.I.2
Rogozin, I.B.3
Koonin, E.V.4
-
2
-
-
42949174108
-
Comparative genomic analysis of fungal genomes reveals intron-rich ancestors
-
J.E. Stajich, F.S. Dietrich, and S.W. Roy Comparative genomic analysis of fungal genomes reveals intron-rich ancestors Genome Biol. 8 2007 R223
-
(2007)
Genome Biol.
, vol.8
, pp. 223
-
-
Stajich, J.E.1
Dietrich, F.S.2
Roy, S.W.3
-
3
-
-
19944431414
-
A genome annotation-driven approach to cloning the human ORFeome
-
J.E. Collins, C.L. Wright, and C.A. Edwards A genome annotation-driven approach to cloning the human ORFeome Genome Biol. 5 2004 R84
-
(2004)
Genome Biol.
, vol.5
, pp. 84
-
-
Collins, J.E.1
Wright, C.L.2
Edwards, C.A.3
-
4
-
-
20044380139
-
The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans
-
DOI 10.1126/science.1103773
-
B.J. Loftus, E. Fung, and P. Roncaglia The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans Science 307 2005 1321 1324 (Pubitemid 40299983)
-
(2005)
Science
, vol.307
, Issue.5713
, pp. 1321-1324
-
-
Loftus, B.J.1
Fung, E.2
Roncaglia, P.3
Rowley, D.4
Amedeo, P.5
Bruno, D.6
Vamathevan, J.7
Miranda, M.8
Anderson, I.J.9
Fraser, J.A.10
Allen, J.E.11
Bosdet, I.E.12
Brent, M.R.13
Chiu, R.14
Doering, T.L.15
Donlin, M.J.16
D'Souza, C.A.17
Fox, D.S.18
Grinberg, V.19
Fu, J.20
Fukushima, M.21
Haas, B.J.22
Huang, J.C.23
Janbon, G.24
Jones, S.J.M.25
Koo, H.L.26
Krzywinski, M.I.27
Kwon-Chung, J.K.28
Lengeler, K.B.29
Maiti, R.30
Marra, M.A.31
Marra, R.E.32
Mathewson, C.A.33
Mitchell, T.G.34
Pertea, M.35
Riggs, F.R.36
Salzberg, S.L.37
Schein, J.E.38
Shvartsbeyn, A.39
Shin, H.40
Shumway, M.41
Specht, C.A.42
Suh, B.B.43
Tenney, A.44
Utterback, T.R.45
Wickes, B.L.46
Wortman, J.R.47
Wye, N.H.48
Kronstad, J.W.49
Lodge, J.K.50
Heitman, J.51
Davis, R.W.52
Fraser, C.M.53
Hyman, R.W.54
more..
-
5
-
-
78649999037
-
Evaluation of models of the mechanisms underlying intron loss and gain in aspergillus fungi
-
L.Y. Zhang, Y.F. Yang, D.K. Niu, Evaluation of models of the mechanisms underlying intron loss and gain in aspergillus fungi, J Mol Evol 71 (2010) 364-373.
-
(2010)
J Mol Evol
, vol.71
, pp. 364-373
-
-
Zhang, L.Y.1
Yang, Y.F.2
Niu, D.K.3
-
6
-
-
0027446476
-
A role for reverse transcripts in gene conversion
-
DOI 10.1038/361170a0
-
L.K. Derr, and J.N. Strathern A role for reverse transcripts in gene conversion Nature 361 1993 170 173 (Pubitemid 23031353)
-
(1993)
Nature
, vol.361
, Issue.6408
, pp. 170-173
-
-
Derr, L.K.1
Strathern, J.N.2
-
7
-
-
0023649687
-
Pseudogenes in yeast?
-
G.R. Fink Pseudogenes in yeast? Cell 49 1987 5 6
-
(1987)
Cell
, vol.49
, pp. 5-6
-
-
Fink, G.R.1
-
8
-
-
33646904207
-
Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans
-
DOI 10.1128/EC.5.5.789-793.2006
-
J.E. Stajich, and F.S. Dietrich Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans Eukaryot. Cell. 5 2006 789 793 (Pubitemid 43794478)
-
(2006)
Eukaryotic Cell
, vol.5
, Issue.5
, pp. 789-793
-
-
Stajich, J.E.1
Dietrich, F.S.2
-
9
-
-
70349100354
-
Intronization, de-intronization and intron sliding are rare in Cryptococcus
-
S.W. Roy Intronization, de-intronization and intron sliding are rare in Cryptococcus BMC Evol. Biol. 9 2009 192
-
(2009)
BMC Evol. Biol.
, vol.9
, pp. 192
-
-
Roy, S.W.1
-
10
-
-
78149335565
-
Evolution of yeast noncoding RNAs reveals an alternative mechanism for widespread intron loss
-
Q.M Mitrovich, B.B. Tuch, F.M. De La Vega, C. Guthrie, and A.D. Johnson Evolution of yeast noncoding RNAs reveals an alternative mechanism for widespread intron loss Science 330 2010 838 841
-
(2010)
Science
, vol.330
, pp. 838-841
-
-
Mitrovich, Q.M.1
Tuch, B.B.2
De La Vega, F.M.3
Guthrie, C.4
Johnson, A.D.5
-
11
-
-
0038780670
-
Eukaryotic intron loss
-
DOI 10.1126/science.1080559
-
T. Mourier, and D.C. Jeffares Eukaryotic intron loss Science 300 2003 1393 (Pubitemid 36638151)
-
(2003)
Science
, vol.300
, Issue.5624
, pp. 1393
-
-
Mourier, T.1
Jeffares, D.C.2
-
12
-
-
29444439485
-
The biology of intron gain and loss
-
DOI 10.1016/j.tig.2005.10.006, PII S0168952505003239
-
D.C. Jeffares, T. Mourier, and D. Penny The biology of intron gain and loss Trends Genet. 22 2006 16 22 (Pubitemid 43011993)
-
(2006)
Trends in Genetics
, vol.22
, Issue.1
, pp. 16-22
-
-
Jeffares, D.C.1
Mourier, T.2
Penny, D.3
-
14
-
-
34250707188
-
Coevolution of genomic intron number and splice sites
-
DOI 10.1016/j.tig.2007.04.001, PII S0168952507001229
-
M. Irimia, D. Penny, and S.W. Roy Coevolution of genomic intron number and splice sites Trends Genet. 23 2007 321 325 (Pubitemid 46962797)
-
(2007)
Trends in Genetics
, vol.23
, Issue.7
, pp. 321-325
-
-
Irimia, M.1
Penny, D.2
Roy, S.W.3
-
15
-
-
0034655641
-
Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast
-
C.A. Davis, L. Grate, M. Spingola, and M. Ares Jr. Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast Nucleic Acids Res. 28 2000 1700 1706 (Pubitemid 30199302)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.8
, pp. 1700-1706
-
-
Davis, C.A.1
Grate, L.2
Spingola, M.3
Ares Jr., M.4
-
16
-
-
0037440652
-
Molecular evolution of eukaryotic genomes: Hemiascomycetous yeast spliceosomal introns
-
DOI 10.1093/nar/gkg213
-
E. Bon, S. Casaregola, and G. Blandin Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns Nucleic Acids Res. 31 2003 1121 1135 (Pubitemid 36284953)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.4
, pp. 1121-1135
-
-
Bon, E.1
Casaregola, S.2
Blandin, G.3
Llorente, B.4
Neuveglise, C.5
Munsterkotter, M.6
Guldener, U.7
Mewes, H.-W.8
Van Helden, J.9
Dujon, B.10
Gaillardin, C.11
-
17
-
-
0032865541
-
Genomic-scale quantitative analysis of yeast pre-mRNA splicing: Implications for splice-site recognition [1]
-
DOI 10.1017/S135583829999091X
-
P.J. Lopez, and B. Seraphin Genomic-scale quantitative analysis of yeast pre-mRNA splicing: implications for splice-site recognition Rna 5 1999 1135 1137 (Pubitemid 29422754)
-
(1999)
RNA
, vol.5
, Issue.9
, pp. 1135-1137
-
-
Lopez, P.J.1
Seraphin, B.2
-
18
-
-
0034663604
-
Analysis of the splicing machinery in fission yeast: A comparison with budding yeast and mammals
-
N.F. Kaufer, and J. Potashkin Analysis of the splicing machinery in fission yeast: a comparison with budding yeast and mammals Nucleic Acids Res. 28 2000 3003 3010 (Pubitemid 30624088)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.16
, pp. 3003-3010
-
-
Kaufer, N.F.1
Potashkin, J.2
-
19
-
-
38049029652
-
Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes
-
S.H. Schwartz, J. Silva, D. Burstein, T. Pupko, E. Eyras, and G. Ast Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes Genome Res. 18 2008 88 103
-
(2008)
Genome Res.
, vol.18
, pp. 88-103
-
-
Schwartz, S.H.1
Silva, J.2
Burstein, D.3
Pupko, T.4
Eyras, E.5
Ast, G.6
-
20
-
-
0028273768
-
The yeast MUD2 protein: An interaction with PRP11 defines a bridge between commitment complexes and U2 snRNP addition
-
N. Abovich, X.C. Liao, and M. Rosbash The yeast MUD2 protein: an interaction with PRP11 defines a bridge between commitment complexes and U2 snRNP addition Genes Dev. 8 1994 843 854 (Pubitemid 24130457)
-
(1994)
Genes and Development
, vol.8
, Issue.7
, pp. 843-854
-
-
Abovich, N.1
Liao, X.C.2
Rosbash, M.3
-
21
-
-
0032521186
-
A cooperative interaction between U2AF65 and mBBP/SF1 facilitates branchpoint region recognition
-
J.A. Berglund, N. Abovich, and M. Rosbash A cooperative interaction between U2AF65 and mBBP/SF1 facilitates branchpoint region recognition Genes Dev. 12 1998 858 867 (Pubitemid 28150886)
-
(1998)
Genes and Development
, vol.12
, Issue.6
, pp. 858-867
-
-
Berglund, J.A.1
Abovich, N.2
Rosbash, M.3
-
22
-
-
0034704310
-
Genomic exploration of the hemiascomycetous yeasts: 1. A set of yeast species for molecular evolution studies
-
DOI 10.1016/S0014-5793(00)02272-9, PII S0014579300022729
-
J. Souciet, M. Aigle, and F. Artiguenave Genomic exploration of the hemiascomycetous yeasts: 1. A set of yeast species for molecular evolution studies FEBS Lett. 487 2000 3 12 (Pubitemid 32008709)
-
(2000)
FEBS Letters
, vol.487
, Issue.1
, pp. 3-12
-
-
Souciet, J.-L.1
Aigle, M.2
Artiguenave, F.3
Blandin, G.4
Bolotin-Fukuhara, M.5
Bon, E.6
Brottier, P.7
Casaregola, S.8
De Montigny, J.9
Dujon, B.10
Durrens, P.11
Gaillardin, C.12
Lepingle, A.13
Llorente, B.14
Malpertuy, A.15
Neuveglise, C.16
Ozier-Kalogeropoulos, O.17
Potier, S.18
Saurin, W.19
Tekaia, F.20
Toffano-Nioche, C.21
Wesolowski-Louvel, M.22
Wincker, P.23
Weissenbach, J.24
more..
-
23
-
-
33846811598
-
High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing
-
DOI 10.1073/pnas.0610354104
-
K. Juneau, C. Palm, M. Miranda, and R.W. Davis High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing Proc. Natl. Acad. Sci. U S A 104 2007 1522 1527 (Pubitemid 46214623)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.5
, pp. 1522-1527
-
-
Juneau, K.1
Palm, C.2
Miranda, M.3
Davis, R.W.4
-
24
-
-
68349134692
-
Unusual composition of a yeast chromosome arm is associated with its delayed replication
-
C. Payen, G. Fischer, C. Marck, C. Proux, D.J. Sherman, J.Y. Coppee, M. Johnston, B. Dujon, and C. Neuveglise Unusual composition of a yeast chromosome arm is associated with its delayed replication Genome Res. 19 2009 1710 1721
-
(2009)
Genome Res.
, vol.19
, pp. 1710-1721
-
-
Payen, C.1
Fischer, G.2
Marck, C.3
Proux, C.4
Sherman, D.J.5
Coppee, J.Y.6
Johnston, M.7
Dujon, B.8
Neuveglise, C.9
-
26
-
-
0037100671
-
MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
-
K. Katoh, K. Misawa, K. Kuma, and T. Miyata MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform Nucleic Acids Res. 30 2002 3059 3066 (Pubitemid 34851225)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.14
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.-I.3
Miyata, T.4
-
27
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
J. Castresana Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis Mol. Biol. Evol. 17 2000 540 552 (Pubitemid 30210700)
-
(2000)
Molecular Biology and Evolution
, vol.17
, Issue.4
, pp. 540-552
-
-
Castresana, J.1
-
28
-
-
0242578620
-
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
-
DOI 10.1080/10635150390235520
-
S. Guindon, and O. Gascuel A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood Syst. Biol. 52 2003 696 704 (Pubitemid 37365050)
-
(2003)
Systematic Biology
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
29
-
-
2142738304
-
WebLogo: A sequence logo generator
-
DOI 10.1101/gr.849004
-
G.E Crooks, G. Hon, J.M. Chandonia, and S.E. Brenner WebLogo: a sequence logo generator Genome Res. 14 2004 1188 1190 (Pubitemid 38811555)
-
(2004)
Genome Research
, vol.14
, Issue.6
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.-M.3
Brenner, S.E.4
-
30
-
-
0025008168
-
Sequence logos: A new way to display consensus sequences
-
T.D. Schneider, and R.M. Stephens Sequence logos: a new way to display consensus sequences Nucleic Acids Res. 18 1990 6097 6100
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
31
-
-
77953727819
-
Detection and analysis of alternative splicing in Yarrowia lipolytica reveal structural constraints facilitating nonsense-mediated decay of intron-retaining transcripts
-
M. Mekouar, I. Blanc-Lenfle, C. Ozanne, C. Da Silva, C. Cruaud, P. Wincker, C. Gaillardin, and C. Neuveglise Detection and analysis of alternative splicing in Yarrowia lipolytica reveal structural constraints facilitating nonsense-mediated decay of intron-retaining transcripts Genome Biol. 11 2010 R65
-
(2010)
Genome Biol.
, vol.11
, pp. 65
-
-
Mekouar, M.1
Blanc-Lenfle, I.2
Ozanne, C.3
Da Silva, C.4
Cruaud, C.5
Wincker, P.6
Gaillardin, C.7
Neuveglise, C.8
-
32
-
-
70349490066
-
Comparative genomics of protoploid Saccharomycetaceae
-
J.L. Souciet, B. Dujon, and C. Gaillardin Comparative genomics of protoploid Saccharomycetaceae Genome Res. 19 2009 1696 1709
-
(2009)
Genome Res.
, vol.19
, pp. 1696-1709
-
-
Souciet, J.L.1
Dujon, B.2
Gaillardin, C.3
-
33
-
-
48249124553
-
Deletion of many yeast introns reveals a minority of genes that require splicing for function
-
J. Parenteau, M. Durand, and S. Veronneau Deletion of many yeast introns reveals a minority of genes that require splicing for function Mol. Biol. Cell. 19 2008 1932 1941
-
(2008)
Mol. Biol. Cell.
, vol.19
, pp. 1932-1941
-
-
Parenteau, J.1
Durand, M.2
Veronneau, S.3
-
34
-
-
33748904910
-
Introns regulate RNA and protein abundance in yeast
-
DOI 10.1534/genetics.106.058560
-
K. Juneau, M. Miranda, M.E. Hillenmeyer, C. Nislow, and R.W. Davis Introns regulate RNA and protein abundance in yeast Genetics 174 2006 511 518 (Pubitemid 44427691)
-
(2006)
Genetics
, vol.174
, Issue.1
, pp. 511-518
-
-
Juneau, K.1
Miranda, M.2
Hillenmeyer, M.E.3
Nislow, C.4
Davis, R.W.5
-
35
-
-
0030947344
-
Molecular evidence for an ancient duplication of the entire yeast genome
-
DOI 10.1038/42711
-
K.H. Wolfe, and D.C. Shields Molecular evidence for an ancient duplication of the entire yeast genome Nature 387 1997 708 713 (Pubitemid 27270611)
-
(1997)
Nature
, vol.387
, Issue.6634
, pp. 708-713
-
-
Wolfe, K.H.1
Shields, D.C.2
-
36
-
-
33645213731
-
Spliceosome structure and function
-
R.F. Gesteland, T.R. Cech, F.A. Atkins, Cold Spring Harbor Laboratory Press Cold Spring Harbor, New York pp. 369-400
-
C.L. Will, and R. Lührmann Spliceosome structure and function R.F. Gesteland, T.R. Cech, F.A. Atkins, The RNA world 2006 Cold Spring Harbor Laboratory Press Cold Spring Harbor, New York pp. 369-400
-
(2006)
The RNA World
-
-
Will, C.L.1
Lührmann, R.2
-
37
-
-
0027923620
-
Involvement of U6 snRNA in 5' splice site selection
-
S. Kandels-Lewis, and B. Seraphin Involvement of U6 snRNA in 5' splice site selection Science 262 1993 2035 2039
-
(1993)
Science
, vol.262
, pp. 2035-2039
-
-
Kandels-Lewis, S.1
Seraphin, B.2
-
38
-
-
0033034668
-
Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae
-
DOI 10.1017/S1355838299981682
-
M. Spingola, L. Grate, D. Haussler, and M. Ares Jr. Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae Rna 5 1999 221 234 (Pubitemid 29079282)
-
(1999)
RNA
, vol.5
, Issue.2
, pp. 221-234
-
-
Spingola, M.1
Grate, L.2
Haussler, D.3
Manuel Jr., A.4
-
39
-
-
0028246944
-
Prevalence and distribution of introns in non-ribosomal protein genes of yeast
-
DOI 10.1007/BF00284201
-
J.R. Rodriguez-Medina, and B.C. Rymond Prevalence and distribution of introns in non-ribosomal protein genes of yeast Mol. Gen. Genet. 243 1994 532 539 (Pubitemid 24178694)
-
(1994)
Molecular and General Genetics
, vol.243
, Issue.5
, pp. 532-539
-
-
Rodriguez-Medina, J.R.1
Rymond, B.C.2
-
40
-
-
0034538886
-
The odyssey of a regulated transcript
-
DOI 10.1017/S135583820000145X
-
J. Vilardell, P. Chartrand, R.H. Singer, and J.R. Warner The odyssey of a regulated transcript Rna 6 2000 1773 1780 (Pubitemid 32001948)
-
(2000)
RNA
, vol.6
, Issue.12
, pp. 1773-1780
-
-
Vilardell, J.1
Chartrand, P.2
Singer, R.H.3
Warner, J.R.4
-
41
-
-
0026624840
-
Mutations at the 3' splice site can be suppressed by compensatory base changes in U1 snRNA in fission yeast
-
C.I. Reich, R.W. VanHoy, G.L. Porter, and J.A. Wise Mutations at the 3' splice site can be suppressed by compensatory base changes in U1 snRNA in fission yeast Cell 69 1992 1159 1169
-
(1992)
Cell
, vol.69
, pp. 1159-1169
-
-
Reich, C.I.1
Vanhoy, R.W.2
Porter, G.L.3
Wise, J.A.4
-
42
-
-
15444370758
-
Spliceosomal introns in the deep-branching eukaryote Trichomonas vaginalis
-
DOI 10.1073/pnas.0407500102
-
S. Vanacova, W. Yan, J.M. Carlton, and P.J. Johnson Spliceosomal introns in the deep-branching eukaryote Trichomonas vaginalis Proc. Natl. Acad. Sci. U S A 102 2005 4430 4435 (Pubitemid 40397129)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.12
, pp. 4430-4435
-
-
Vanacova, S.1
Yan, W.2
Carlton, J.M.3
Johnson, P.J.4
-
43
-
-
0034663604
-
Analysis of the splicing machinery in fission yeast: A comparison with budding yeast and mammals
-
N.F. Käufer, and J. Potashkin Analysis of the splicing machinery in fission yeast: A comparison with budding yeast and mammals Nucleic Acid Res. 28 16 2000 3003 3010 (Pubitemid 30624088)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.16
, pp. 3003-3010
-
-
Kaufer, N.F.1
Potashkin, J.2
-
44
-
-
0033576626
-
Functional recognition of the 3' splice site AG by the splicing factor U2AF35
-
S. Wu, C.M. Romfo, T.W. Nilsen, and M.R. Green Functional recognition of the 3' splice site AG by the splicing factor U2AF35 Nature 402 1999 832 835
-
(1999)
Nature
, vol.402
, pp. 832-835
-
-
Wu, S.1
Romfo, C.M.2
Nilsen, T.W.3
Green, M.R.4
-
45
-
-
35148880587
-
A conditional role of U2AF in splicing of introns with unconventional polypyrimidine tracts
-
DOI 10.1128/MCB.00627-07
-
V. Sridharan, and R. Singh A conditional role of U2AF in splicing of introns with unconventional polypyrimidine tracts Mol. Cell. Biol. 27 2007 7334 7344 (Pubitemid 47549765)
-
(2007)
Molecular and Cellular Biology
, vol.27
, Issue.20
, pp. 7334-7344
-
-
Sridharan, V.1
Singh, R.2
-
46
-
-
0026030643
-
A U-rich tract enhances usage of an alternative 3′ splice site in yeast
-
B. Patterson, and C. Guthrie A U-rich tract enhances usage of an alternative 3' splice site in yeast Cell 64 1991 181 187 (Pubitemid 121001149)
-
(1991)
Cell
, vol.64
, Issue.1
, pp. 181-187
-
-
Patterson, B.1
Guthrie, C.2
-
47
-
-
0347623371
-
Genome-Wide Survey of Human Alternative Pre-mRNA Splicing with Exon Junction Microarrays
-
DOI 10.1126/science.1090100
-
J.M. Johnson, J. Castle, and P. Garrett-Engele Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays Science 302 2003 2141 2144 (Pubitemid 38017950)
-
(2003)
Science
, vol.302
, Issue.5653
, pp. 2141-2144
-
-
Johnson, J.M.1
Castle, J.2
Garrett-Engele, P.3
Kan, Z.4
Loerch, P.M.5
Armour, C.D.6
Santos, R.7
Schadt, E.E.8
Stoughton, R.9
Shoemaker, D.D.10
-
48
-
-
33846681383
-
Different levels of alternative splicing among eukaryotes
-
DOI 10.1093/nar/gkl924
-
E. Kim, A. Magen, and G. Ast Different levels of alternative splicing among eukaryotes Nucleic Acids Res. 35 2007 125 131 (Pubitemid 46189837)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.1
, pp. 125-131
-
-
Kim, E.1
Magen, A.2
Ast, G.3
-
49
-
-
0035393343
-
Genome-wide detection of alternative splicing in expressed sequences of human genes
-
B. Modrek, A. Resch, C. Grasso, and C. Lee Genome-wide detection of alternative splicing in expressed sequences of human genes Nucleic Acids Res 29 2001 2850 2859 (Pubitemid 32685050)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.13
, pp. 2850-2859
-
-
Modrek, B.1
Resch, A.2
Grasso, C.3
Lee, C.4
-
50
-
-
33746927884
-
The connection between splicing and cancer
-
DOI 10.1242/jcs.03053
-
A. Srebrow, and A.R. Kornblihtt The connection between splicing and cancer J. Cell. Sci. 119 2006 2635 2641 (Pubitemid 44184000)
-
(2006)
Journal of Cell Science
, vol.119
, Issue.13
, pp. 2635-2641
-
-
Srebrow, A.1
Kornblihtt, A.R.2
-
51
-
-
0032534643
-
+ gene involved in pre-mRNA splicing encodes a homologue of highly conserved splicing factor, SAP155
-
Y. Habara, S. Urushiyama, T. Tani, and Y. Ohshima The fission yeast prp10(+) gene involved in pre-mRNA splicing encodes a homologue of highly conserved splicing factor, SAP155 Nucleic Acids Res. 26 1998 5662 5669 (Pubitemid 28554736)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.24
, pp. 5662-5669
-
-
Habara, Y.1
Urushiyama, S.2
Tani, T.3
Ohshima, Y.4
-
52
-
-
70350153322
-
Alternative splicing of PTC7 in Saccharomyces cerevisiae determines protein localization
-
K. Juneau, C. Nislow, and R.W. Davis Alternative splicing of PTC7 in Saccharomyces cerevisiae determines protein localization Genetics 183 2009 185 194
-
(2009)
Genetics
, vol.183
, pp. 185-194
-
-
Juneau, K.1
Nislow, C.2
Davis, R.W.3
-
53
-
-
37649022869
-
SRC1: An intron-containing yeast gene involved in sister chromatid segregation
-
S. Rodriguez-Navarro, J.C. Igual, and J.E. Perez-Ortin SRC1: an intron-containing yeast gene involved in sister chromatid segregation Yeast 19 2002 43 54
-
(2002)
Yeast
, vol.19
, pp. 43-54
-
-
Rodriguez-Navarro, S.1
Igual, J.C.2
Perez-Ortin, J.E.3
-
54
-
-
34147162419
-
Computational and experimental approaches double the number of known introns in the pathogenic yeast Candida albicans
-
DOI 10.1101/gr.6111907
-
Q.M. Mitrovich, B.B. Tuch, C. Guthrie, and A.D. Johnson Computational and experimental approaches double the number of known introns in the pathogenic yeast Candida albicans Genome Res. 17 2007 492 502 (Pubitemid 46556453)
-
(2007)
Genome Research
, vol.17
, Issue.4
, pp. 492-502
-
-
Mitrovich, Q.M.1
Tuch, B.B.2
Guthrie, C.3
Johnson, A.D.4
-
55
-
-
33845223334
-
A large-scale full-length cDNA analysis to explore the budding yeast transcriptome
-
DOI 10.1073/pnas.0605645103
-
F. Miura, N. Kawaguchi, J. Sese, A. Toyoda, M. Hattori, S. Morishita, and T. Ito A large-scale full-length cDNA analysis to explore the budding yeast transcriptome Proc. Natl. Acad. Sci. U S A 103 2006 17846 17851 (Pubitemid 44852248)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.47
, pp. 17846-17851
-
-
Miura, F.1
Kawaguchi, N.2
Sese, J.3
Toyoda, A.4
Hattori, M.5
Morishita, S.6
Ito, T.7
-
56
-
-
33645785104
-
A high-resolution map of transcription in the yeast genome
-
L. David, W. Huber, M. Granovskaia, J. Toedling, C.J. Palm, L. Bofkin, T. Jones, R.W. Davis, and L.M. Steinmetz A high-resolution map of transcription in the yeast genome Proc. Natl. Acad. Sci. U S A 103 2006 5320 5325
-
(2006)
Proc. Natl. Acad. Sci. U S A
, vol.103
, pp. 5320-5325
-
-
David, L.1
Huber, W.2
Granovskaia, M.3
Toedling, J.4
Palm, C.J.5
Bofkin, L.6
Jones, T.7
Davis, R.W.8
Steinmetz, L.M.9
-
57
-
-
45549088326
-
The transcriptional landscape of the yeast genome defined by RNA sequencing
-
DOI 10.1126/science.1158441
-
U. Nagalakshmi, Z. Wang, K. Waern, C. Shou, D. Raha, M. Gerstein, and M. Snyder The transcriptional landscape of the yeast genome defined by RNA sequencing Science 320 2008 1344 1349 (Pubitemid 351929471)
-
(2008)
Science
, vol.320
, Issue.5881
, pp. 1344-1349
-
-
Nagalakshmi, U.1
Wang, Z.2
Waern, K.3
Shou, C.4
Raha, D.5
Gerstein, M.6
Snyder, M.7
-
58
-
-
46249096804
-
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
-
DOI 10.1038/nature07002, PII NATURE07002
-
B.T. Wilhelm, S. Marguerat, S. Watt, F. Schubert, V. Wood, I. Goodhead, C.J. Penkett, J. Rogers, and J. Bahler Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution Nature 453 2008 1239 1243 (Pubitemid 351913597)
-
(2008)
Nature
, vol.453
, Issue.7199
, pp. 1239-1243
-
-
Wilhelm, B.T.1
Marguerat, S.2
Watt, S.3
Schubert, F.4
Wood, V.5
Goodhead, I.6
Penkett, C.J.7
Rogers, J.8
Bahler, J.9
-
59
-
-
0025913896
-
Meiosis-specific RNA splicing in yeast
-
J.A. Engebrecht, K. Voelkel-Meiman, and G.S. Roeder Meiosis-specific RNA splicing in yeast Cell 66 1991 1257 1268 (Pubitemid 121001414)
-
(1991)
Cell
, vol.66
, Issue.6
, pp. 1257-1268
-
-
Engebrecht, J.1
Voelkel-Meiman, K.2
Roeder, G.S.3
-
60
-
-
0033569945
-
The Saccharomyces cerevisiae MER3 gene, encoding a novel helicase-like protein, is required for crossover control in meiosis
-
DOI 10.1093/emboj/18.20.5714
-
T. Nakagawa, and H. Ogawa The Saccharomyces cerevisiae MER3 gene, encoding a novel helicase-like protein, is required for crossover control in meiosis Embo. J. 18 1999 5714 5723 (Pubitemid 29486389)
-
(1999)
EMBO Journal
, vol.18
, Issue.20
, pp. 5714-5723
-
-
Nakagawa, T.1
Ogawa, H.2
-
61
-
-
34748855702
-
Rapid, Transcript-Specific Changes in Splicing in Response to Environmental Stress
-
DOI 10.1016/j.molcel.2007.07.018, PII S1097276507004911
-
J.A Pleiss, G.B. Whitworth, M. Bergkessel, and C. Guthrie Rapid, transcript-specific changes in splicing in response to environmental stress Mol. Cell. 27 2007 928 937 (Pubitemid 47489768)
-
(2007)
Molecular Cell
, vol.27
, Issue.6
, pp. 928-937
-
-
Pleiss, J.A.1
Whitworth, G.B.2
Bergkessel, M.3
Guthrie, C.4
-
62
-
-
33646882843
-
Autoregulation of the mRNA export factor Yra1p requires inefficient splicing of its pre-mRNA
-
DOI 10.1261/rna.6706
-
P.J. Preker, and C. Guthrie Autoregulation of the mRNA export factor Yra1p requires inefficient splicing of its pre-mRNA Rna 12 2006 994 1006 (Pubitemid 43788118)
-
(2006)
RNA
, vol.12
, Issue.6
, pp. 994-1006
-
-
Preker, P.J.1
Guthrie, C.2
-
63
-
-
33847059515
-
YRA1 Autoregulation Requires Nuclear Export and Cytoplasmic Edc3p-Mediated Degradation of Its Pre-mRNA
-
DOI 10.1016/j.molcel.2007.01.012, PII S1097276507000172
-
S. Dong, C. Li, D. Zenklusen, R.H. Singer, A. Jacobson, and F. He YRA1 autoregulation requires nuclear export and cytoplasmic Edc3p-mediated degradation of its pre-mRNA Mol. Cell. 25 2007 559 573 (Pubitemid 46274442)
-
(2007)
Molecular Cell
, vol.25
, Issue.4
, pp. 559-573
-
-
Dong, S.1
Li, C.2
Zenklusen, D.3
Singer, R.H.4
Jacobson, A.5
He, F.6
-
64
-
-
10244239321
-
Life with 6000 genes
-
DOI 10.1126/science.274.5287.546
-
A. Goffeau, B.G. Barrell, and H. Bussey Life with 6000 genes Science 274 1996 546 567 (Pubitemid 26360429)
-
(1996)
Science
, vol.274
, Issue.5287
, pp. 546-567
-
-
Goffeau, A.1
Barrell, G.2
Bussey, H.3
Davis, R.W.4
Dujon, B.5
Feldmann, H.6
Galibert, F.7
Hoheisel, J.D.8
Jacq, C.9
Johnston, M.10
Louis, E.J.11
Mewes, H.W.12
Murakami, Y.13
Philippsen, P.14
Tettelin, H.15
Oliver, S.G.16
|