-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.J., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997), 3389–3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
84935037616
-
In vitro reconstitution and crystallization of Cas9 endonuclease bound to a guide RNA and a DNA target
-
Anders, C., Niewoehner, O., Jinek, M., In vitro reconstitution and crystallization of Cas9 endonuclease bound to a guide RNA and a DNA target. Methods Enzymol. 558 (2015), 515–537.
-
(2015)
Methods Enzymol.
, vol.558
, pp. 515-537
-
-
Anders, C.1
Niewoehner, O.2
Jinek, M.3
-
3
-
-
84865144676
-
CRISPR interference can prevent natural transformation and virulence acquisition during in vivo bacterial infection
-
Bikard, D., Hatoum-Aslan, A., Mucida, D., Marraffini, L.A., CRISPR interference can prevent natural transformation and virulence acquisition during in vivo bacterial infection. Cell Host Microbe 12 (2012), 177–186.
-
(2012)
Cell Host Microbe
, vol.12
, pp. 177-186
-
-
Bikard, D.1
Hatoum-Aslan, A.2
Mucida, D.3
Marraffini, L.A.4
-
4
-
-
84872607723
-
Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system
-
Bondy-Denomy, J., Pawluk, A., Maxwell, K.L., Davidson, A.R., Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system. Nature 493 (2013), 429–432.
-
(2013)
Nature
, vol.493
, pp. 429-432
-
-
Bondy-Denomy, J.1
Pawluk, A.2
Maxwell, K.L.3
Davidson, A.R.4
-
5
-
-
84957535039
-
Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems
-
Burstein, D., Sun, C.L., Brown, C.T., Sharon, I., Anantharaman, K., Probst, A.J., Thomas, B.C., Banfield, J.F., Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems. Nat. Commun., 7, 2016, 10613.
-
(2016)
Nat. Commun.
, vol.7
, pp. 10613
-
-
Burstein, D.1
Sun, C.L.2
Brown, C.T.3
Sharon, I.4
Anantharaman, K.5
Probst, A.J.6
Thomas, B.C.7
Banfield, J.F.8
-
6
-
-
84930197469
-
Targeted DNA degradation using a CRISPR device stably carried in the host genome
-
Caliando, B.J., Voigt, C.A., Targeted DNA degradation using a CRISPR device stably carried in the host genome. Nat. Commun., 6, 2015, 6989.
-
(2015)
Nat. Commun.
, vol.6
, pp. 6989
-
-
Caliando, B.J.1
Voigt, C.A.2
-
7
-
-
84983208863
-
Sequence-specific antimicrobials using efficiently delivered RNA-guided nucleases
-
Citorik, R.J., Mimee, M., Lu, T.K., Sequence-specific antimicrobials using efficiently delivered RNA-guided nucleases. Nat. Biotechnol. 32 (2014), 1141–1145.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 1141-1145
-
-
Citorik, R.J.1
Mimee, M.2
Lu, T.K.3
-
8
-
-
84970046200
-
Consequences of Cas9 cleavage in the chromosome of Escherichia coli
-
Cui, L., Bikard, D., Consequences of Cas9 cleavage in the chromosome of Escherichia coli. Nucleic Acids Res. 44 (2016), 4243–4251.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. 4243-4251
-
-
Cui, L.1
Bikard, D.2
-
9
-
-
85020928320
-
Structural basis of CRISPR-SpyCas9 inhibition by an anti-CRISPR protein
-
Dong, D., Guo, M., Wang, S., Zhu, Y., Wang, S., Xiong, Z., Yang, J., Xu, Z., Huang, Z., Structural basis of CRISPR-SpyCas9 inhibition by an anti-CRISPR protein. Nature 546 (2017), 436–439.
-
(2017)
Nature
, vol.546
, pp. 436-439
-
-
Dong, D.1
Guo, M.2
Wang, S.3
Zhu, Y.4
Wang, S.5
Xiong, Z.6
Yang, J.7
Xu, Z.8
Huang, Z.9
-
10
-
-
85041237426
-
Systematic discovery of antiphage defense systems in the microbial pangenome
-
Doron, S., Melamed, S., Ofir, G., Leavitt, A., Lopatina, A., Keren, M., Amitai, G., Sorek, R., Systematic discovery of antiphage defense systems in the microbial pangenome. Science, 359, 2018, eaar4120.
-
(2018)
Science
, vol.359
, pp. eaar4120
-
-
Doron, S.1
Melamed, S.2
Ofir, G.3
Leavitt, A.4
Lopatina, A.5
Keren, M.6
Amitai, G.7
Sorek, R.8
-
11
-
-
84913594397
-
The new frontier of genome engineering with CRISPR-Cas9
-
Doudna, J.A., Charpentier, E., The new frontier of genome engineering with CRISPR-Cas9. Science, 346, 2014, 1258096.
-
(2014)
Science
, vol.346
, pp. 1258096
-
-
Doudna, J.A.1
Charpentier, E.2
-
12
-
-
84887104139
-
Orthogonal Cas9 proteins for RNA-guided gene regulation and editing
-
Esvelt, K.M., Mali, P., Braff, J.L., Moosburner, M., Yaung, S.J., Church, G.M., Orthogonal Cas9 proteins for RNA-guided gene regulation and editing. Nat. Methods 10 (2013), 1116–1123.
-
(2013)
Nat. Methods
, vol.10
, pp. 1116-1123
-
-
Esvelt, K.M.1
Mali, P.2
Braff, J.L.3
Moosburner, M.4
Yaung, S.J.5
Church, G.M.6
-
13
-
-
4344598273
-
Quantifying the accessibility of the metagenome by random expression cloning techniques
-
Gabor, E.M., Alkema, W.B.L., Janssen, D.B., Quantifying the accessibility of the metagenome by random expression cloning techniques. Environ. Microbiol. 6 (2004), 879–886.
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 879-886
-
-
Gabor, E.M.1
Alkema, W.B.L.2
Janssen, D.B.3
-
14
-
-
84989865639
-
Functional mining of transporters using synthetic selections
-
Genee, H.J., Bali, A.P., Petersen, S.D., Siedler, S., Bonde, M.T., Gronenberg, L.S., Kristensen, M., Harrison, S.J., Sommer, M.O.A., Functional mining of transporters using synthetic selections. Nat. Chem. Biol. 12 (2016), 1015–1022.
-
(2016)
Nat. Chem. Biol.
, vol.12
, pp. 1015-1022
-
-
Genee, H.J.1
Bali, A.P.2
Petersen, S.D.3
Siedler, S.4
Bonde, M.T.5
Gronenberg, L.S.6
Kristensen, M.7
Harrison, S.J.8
Sommer, M.O.A.9
-
15
-
-
84925639491
-
Software-supported USER cloning strategies for site-directed mutagenesis and DNA assembly
-
Genee, H.J., Bonde, M.T., Bagger, F.O., Jespersen, J.B., Sommer, M.O., Wernersson, R., Olsen, L.R., Software-supported USER cloning strategies for site-directed mutagenesis and DNA assembly. ACS Synth. Biol. 4 (2015), 342–349.
-
(2015)
ACS Synth. Biol.
, vol.4
, pp. 342-349
-
-
Genee, H.J.1
Bonde, M.T.2
Bagger, F.O.3
Jespersen, J.B.4
Sommer, M.O.5
Wernersson, R.6
Olsen, L.R.7
-
16
-
-
85053361369
-
Genome-based taxonomic classification of Bacteroidetes
-
Hahnke, R.L., Meier-Kolthoff, J.P., García-López, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.P., Göker, M., Genome-based taxonomic classification of Bacteroidetes. Front. Microbiol., 7, 2016, 2003.
-
(2016)
Front. Microbiol.
, vol.7
, pp. 2003
-
-
Hahnke, R.L.1
Meier-Kolthoff, J.P.2
García-López, M.3
Mukherjee, S.4
Huntemann, M.5
Ivanova, N.N.6
Woyke, T.7
Kyrpides, N.C.8
Klenk, H.P.9
Göker, M.10
-
17
-
-
84976905626
-
EGGNOG 4.5: A hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
-
Huerta-Cepas, J., Szklarczyk, D., Forslund, K., Cook, H., Heller, D., Walter, M.C., Rattei, T., Mende, D.R., Sunagawa, S., Kuhn, M., et al. EGGNOG 4.5: A hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. Nucleic Acids Res. 44 (2016), D286–D293.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D286-D293
-
-
Huerta-Cepas, J.1
Szklarczyk, D.2
Forslund, K.3
Cook, H.4
Heller, D.5
Walter, M.C.6
Rattei, T.7
Mende, D.R.8
Sunagawa, S.9
Kuhn, M.10
-
18
-
-
84966929319
-
A new view of the tree of life
-
Hug, L.A., Baker, B.J., Anantharaman, K., Brown, C.T., Probst, A.J., Castelle, C.J., Butterfield, C.N., Hernsdorf, A.W., Amano, Y., Ise, K., et al. A new view of the tree of life. Nat. Microbiol., 1, 2016, 16048.
-
(2016)
Nat. Microbiol.
, vol.1
, pp. 16048
-
-
Hug, L.A.1
Baker, B.J.2
Anantharaman, K.3
Brown, C.T.4
Probst, A.J.5
Castelle, C.J.6
Butterfield, C.N.7
Hernsdorf, A.W.8
Amano, Y.9
Ise, K.10
-
19
-
-
85050695594
-
Widespread anti-CRISPR proteins in virulent bacteriophages inhibit a range of Cas9 proteins
-
Hynes, A.P., Rousseau, G.M., Agudelo, D., Goulet, A., Amigues, B., Loehr, J., Romero, D.A., Fremaux, C., Horvath, P., Doyon, Y., et al. Widespread anti-CRISPR proteins in virulent bacteriophages inhibit a range of Cas9 proteins. Nat. Commun., 9, 2018, 2919.
-
(2018)
Nat. Commun.
, vol.9
, pp. 2919
-
-
Hynes, A.P.1
Rousseau, G.M.2
Agudelo, D.3
Goulet, A.4
Amigues, B.5
Loehr, J.6
Romero, D.A.7
Fremaux, C.8
Horvath, P.9
Doyon, Y.10
-
20
-
-
85028970470
-
An anti-CRISPR from a virulent streptococcal phage inhibits Streptococcus pyogenes Cas9
-
Hynes, A.P., Rousseau, G.M., Lemay, M.L., Horvath, P., Romero, D.A., Fremaux, C., Moineau, S., An anti-CRISPR from a virulent streptococcal phage inhibits Streptococcus pyogenes Cas9. Nat. Microbiol. 2 (2017), 1374–1380.
-
(2017)
Nat. Microbiol.
, vol.2
, pp. 1374-1380
-
-
Hynes, A.P.1
Rousseau, G.M.2
Lemay, M.L.3
Horvath, P.4
Romero, D.A.5
Fremaux, C.6
Moineau, S.7
-
21
-
-
84865070369
-
A programmable dual-RNA–guided DNA endonuclease in adaptive bacetrial immunity
-
Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J.A., Charpentier, E., A programmable dual-RNA–guided DNA endonuclease in adaptive bacetrial immunity. Science 337 (2012), 816–821.
-
(2012)
Science
, vol.337
, pp. 816-821
-
-
Jinek, M.1
Chylinski, K.2
Fonfara, I.3
Hauer, M.4
Doudna, J.A.5
Charpentier, E.6
-
22
-
-
85020445396
-
Diversity, classification and evolution of CRISPR-Cas systems
-
Koonin, E.V., Makarova, K.S., Zhang, F., Diversity, classification and evolution of CRISPR-Cas systems. Curr. Opin. Microbiol. 37 (2017), 67–78.
-
(2017)
Curr. Opin. Microbiol.
, vol.37
, pp. 67-78
-
-
Koonin, E.V.1
Makarova, K.S.2
Zhang, F.3
-
23
-
-
85019066712
-
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
-
Koren, S., Walenz, B.P., Berlin, K., Miller, J.R., Bergman, N.H., Phillippy, A.M., Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Genome Res. 27 (2017), 722–736.
-
(2017)
Genome Res.
, vol.27
, pp. 722-736
-
-
Koren, S.1
Walenz, B.P.2
Berlin, K.3
Miller, J.R.4
Bergman, N.H.5
Phillippy, A.M.6
-
24
-
-
85013159173
-
Origins and challenges of viral dark matter
-
Krishnamurthy, S.R., Wang, D., Origins and challenges of viral dark matter. Virus Res. 239 (2017), 136–142.
-
(2017)
Virus Res.
, vol.239
, pp. 136-142
-
-
Krishnamurthy, S.R.1
Wang, D.2
-
25
-
-
85026638412
-
A versatile one-step CRISPR-Cas9 based approach to plasmid-curing
-
Lauritsen, I., Porse, A., Sommer, M.O.A., Nørholm, M.H.H., A versatile one-step CRISPR-Cas9 based approach to plasmid-curing. Microb. Cell Fact., 16, 2017, 135.
-
(2017)
Microb. Cell Fact.
, vol.16
, pp. 135
-
-
Lauritsen, I.1
Porse, A.2
Sommer, M.O.A.3
Nørholm, M.H.H.4
-
26
-
-
85014768147
-
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
-
Letunic, I., Bork, P., Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees. Nucleic Acids Res. 44 (2016), W242–W245.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. W242-W245
-
-
Letunic, I.1
Bork, P.2
-
27
-
-
77955349302
-
Population dynamics of antibiotic treatment: a mathematical model and hypotheses for time-kill and continuous-culture experiments
-
Levin, B.R., Udekwu, K.I., Population dynamics of antibiotic treatment: a mathematical model and hypotheses for time-kill and continuous-culture experiments. Antimicrob. Agents Chemother. 54 (2010), 3414–3426.
-
(2010)
Antimicrob. Agents Chemother.
, vol.54
, pp. 3414-3426
-
-
Levin, B.R.1
Udekwu, K.I.2
-
28
-
-
33745634395
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li, W., Godzik, A., Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22 (2006), 1658–1659.
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
29
-
-
84924426384
-
Poretools: a toolkit for analyzing nanopore sequence data
-
Loman, N.J., Quinlan, A.R., Poretools: a toolkit for analyzing nanopore sequence data. Bioinformatics 30 (2014), 3399–3401.
-
(2014)
Bioinformatics
, vol.30
, pp. 3399-3401
-
-
Loman, N.J.1
Quinlan, A.R.2
-
30
-
-
84938421951
-
A complete bacterial genome assembled de novo using only nanopore sequencing data
-
Loman, N.J., Quick, J., Simpson, J.T., A complete bacterial genome assembled de novo using only nanopore sequencing data. Nat. Methods 12 (2015), 733–735.
-
(2015)
Nat. Methods
, vol.12
, pp. 733-735
-
-
Loman, N.J.1
Quick, J.2
Simpson, J.T.3
-
31
-
-
0030861452
-
Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2regulatory elements
-
Lutz, R., Bujard, H., Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2regulatory elements. Nucleic Acids Res. 25 (1997), 1203–1210.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 1203-1210
-
-
Lutz, R.1
Bujard, H.2
-
32
-
-
84944449180
-
An updated evolutionary classification of CRISPR-Cas systems
-
Makarova, K.S., Wolf, Y.I., Alkhnbashi, O.S., Costa, F., Shah, S.A., Saunders, S.J., Barrangou, R., Brouns, S.J.J., Charpentier, E., Haft, D.H., et al. An updated evolutionary classification of CRISPR-Cas systems. Nat. Rev. Microbiol. 13 (2015), 722–736.
-
(2015)
Nat. Rev. Microbiol.
, vol.13
, pp. 722-736
-
-
Makarova, K.S.1
Wolf, Y.I.2
Alkhnbashi, O.S.3
Costa, F.4
Shah, S.A.5
Saunders, S.J.6
Barrangou, R.7
Brouns, S.J.J.8
Charpentier, E.9
Haft, D.H.10
-
33
-
-
84941112071
-
SEVA 2.0: an update of the Standard European Vector Architecture for de-/re-construction of bacterial functionalities
-
Martínez-Garćía, E., Aparicio, T., Goñi-Moreno, A., Fraile, S., De Lorenzo, V., SEVA 2.0: an update of the Standard European Vector Architecture for de-/re-construction of bacterial functionalities. Nucleic Acids Res. 43 (2015), D1183–D1189.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D1183-D1189
-
-
Martínez-Garćía, E.1
Aparicio, T.2
Goñi-Moreno, A.3
Fraile, S.4
De Lorenzo, V.5
-
34
-
-
84876587454
-
Detecting sequence homology at the gene cluster level with multigeneblast
-
Medema, M.H., Takano, E., Breitling, R., Detecting sequence homology at the gene cluster level with multigeneblast. Mol. Biol. Evol. 30 (2013), 1218–1223.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 1218-1223
-
-
Medema, M.H.1
Takano, E.2
Breitling, R.3
-
35
-
-
79952168979
-
Multidrug-resistant enterococci lack CRISPR-cas
-
e00227–10
-
Palmer, K.L., Gilmore, M.S., Multidrug-resistant enterococci lack CRISPR-cas. MBio, 1, 2010 e00227–10.
-
(2010)
MBio
, vol.1
-
-
Palmer, K.L.1
Gilmore, M.S.2
-
36
-
-
85006307718
-
Naturally occurring off-switches for CRISPR-Cas9
-
Pawluk, A., Amrani, N., Zhang, Y., Garcia, B., Hidalgo-Reyes, Y., Lee, J., Edraki, A., Shah, M., Sontheimer, E.J., Maxwell, K.L., et al. Naturally occurring off-switches for CRISPR-Cas9. Cell 167 (2016), 1829–1838.e9.
-
(2016)
Cell
, vol.167
, pp. 1829-1838.e9
-
-
Pawluk, A.1
Amrani, N.2
Zhang, Y.3
Garcia, B.4
Hidalgo-Reyes, Y.5
Lee, J.6
Edraki, A.7
Shah, M.8
Sontheimer, E.J.9
Maxwell, K.L.10
-
37
-
-
84899866053
-
A new group of phage anti-CRISPR genes inhibits the type I-E CRISPR-Cas system of Pseudomonas aeruginosa
-
Pawluk, A., Bondy-Denomy, J., Cheung, V.H.W., Maxwell, K.L., Davidson, A.R., A new group of phage anti-CRISPR genes inhibits the type I-E CRISPR-Cas system of Pseudomonas aeruginosa. MBio, 5, 2014, e00896.
-
(2014)
MBio
, vol.5
, pp. e00896
-
-
Pawluk, A.1
Bondy-Denomy, J.2
Cheung, V.H.W.3
Maxwell, K.L.4
Davidson, A.R.5
-
38
-
-
85038241811
-
Anti-CRISPR: discovery, mechanism and function
-
Pawluk, A., Davidson, A.R., Maxwell, K.L., Anti-CRISPR: discovery, mechanism and function. Nat. Rev. Microbiol. 16 (2018), 12–17.
-
(2018)
Nat. Rev. Microbiol.
, vol.16
, pp. 12-17
-
-
Pawluk, A.1
Davidson, A.R.2
Maxwell, K.L.3
-
39
-
-
85009201750
-
Inhibition of CRISPR-Cas9 with bacteriophage proteins
-
Rauch, B.J., Silvis, M.R., Hultquist, J.F., Waters, C.S., McGregor, M.J., Krogan, N.J., Bondy-Denomy, J., Inhibition of CRISPR-Cas9 with bacteriophage proteins. Cell 168 (2017), 150–158.e10.
-
(2017)
Cell
, vol.168
, pp. 150-158.e10
-
-
Rauch, B.J.1
Silvis, M.R.2
Hultquist, J.F.3
Waters, C.S.4
McGregor, M.J.5
Krogan, N.J.6
Bondy-Denomy, J.7
-
40
-
-
80054911634
-
Metavir: a web server dedicated to virome analysis
-
Roux, S., Faubladier, M., Mahul, A., Paulhe, N., Bernard, A., Debroas, D., Enault, F., Metavir: a web server dedicated to virome analysis. Bioinformatics 27 (2011), 3074–3075.
-
(2011)
Bioinformatics
, vol.27
, pp. 3074-3075
-
-
Roux, S.1
Faubladier, M.2
Mahul, A.3
Paulhe, N.4
Bernard, A.5
Debroas, D.6
Enault, F.7
-
41
-
-
84930658013
-
VirSorter: mining viral signal from microbial genomic data
-
Roux, S., Enault, F., Hurwitz, B.L., Sullivan, M.B., VirSorter: mining viral signal from microbial genomic data. PeerJ, 3, 2015, e985.
-
(2015)
PeerJ
, vol.3
, pp. e985
-
-
Roux, S.1
Enault, F.2
Hurwitz, B.L.3
Sullivan, M.B.4
-
42
-
-
84884286187
-
Revenge of the phages: defeating bacterial defences
-
Samson, J.E., Magadán, A.H., Sabri, M., Moineau, S., Revenge of the phages: defeating bacterial defences. Nat. Rev. Microbiol. 11 (2013), 675–687.
-
(2013)
Nat. Rev. Microbiol.
, vol.11
, pp. 675-687
-
-
Samson, J.E.1
Magadán, A.H.2
Sabri, M.3
Moineau, S.4
-
43
-
-
77956181585
-
High-throughput production of human proteins for crystallization: the SGC experience
-
Savitsky, P., Bray, J., Cooper, C.D.O., Marsden, B.D., Mahajan, P., Burgess-Brown, N.A., Gileadi, O., High-throughput production of human proteins for crystallization: the SGC experience. J. Struct. Biol. 172 (2010), 3–13.
-
(2010)
J. Struct. Biol.
, vol.172
, pp. 3-13
-
-
Savitsky, P.1
Bray, J.2
Cooper, C.D.O.3
Marsden, B.D.4
Mahajan, P.5
Burgess-Brown, N.A.6
Gileadi, O.7
-
44
-
-
85010207605
-
Diversity and evolution of class 2 CRISPR–Cas systems
-
Shmakov, S., Smargon, A., Scott, D., Cox, D., Pyzocha, N., Yan, W., Abudayyeh, O.O., Gootenberg, J.S., Makarova, K.S., Wolf, Y.I., et al. Diversity and evolution of class 2 CRISPR–Cas systems. Nat. Rev. Microbiol. 15 (2017), 169–182.
-
(2017)
Nat. Rev. Microbiol.
, vol.15
, pp. 169-182
-
-
Shmakov, S.1
Smargon, A.2
Scott, D.3
Cox, D.4
Pyzocha, N.5
Yan, W.6
Abudayyeh, O.O.7
Gootenberg, J.S.8
Makarova, K.S.9
Wolf, Y.I.10
-
45
-
-
80054078476
-
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
-
Sievers, F., Wilm, A., Dineen, D., Gibson, T.J., Karplus, K., Li, W., Lopez, R., McWilliam, H., Remmert, M., Söding, J., et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol. Syst. Biol., 7, 2011, 539.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 539
-
-
Sievers, F.1
Wilm, A.2
Dineen, D.3
Gibson, T.J.4
Karplus, K.5
Li, W.6
Lopez, R.7
McWilliam, H.8
Remmert, M.9
Söding, J.10
-
46
-
-
85008394347
-
Consensus statement: virus taxonomy in the age of metagenomics
-
Simmonds, P., Adams, M.J., Benkő M., Breitbart, M., Brister, J.R., Carstens, E.B., Davison, A.J., Delwart, E., Gorbalenya, A.E., Harrach, B., et al. Consensus statement: virus taxonomy in the age of metagenomics. Nat. Rev. Microbiol. 15 (2017), 161–168.
-
(2017)
Nat. Rev. Microbiol.
, vol.15
, pp. 161-168
-
-
Simmonds, P.1
Adams, M.J.2
Benkő, M.3
Breitbart, M.4
Brister, J.R.5
Carstens, E.B.6
Davison, A.J.7
Delwart, E.8
Gorbalenya, A.E.9
Harrach, B.10
-
47
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith, T.F., Waterman, M.S., Identification of common molecular subsequences. J. Mol. Biol. 147 (1981), 195–197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
48
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
Söding, J., Biegert, A., Lupas, A.N., The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res. 33 (2005), W244–W248.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. W244-W248
-
-
Söding, J.1
Biegert, A.2
Lupas, A.N.3
-
49
-
-
69549086653
-
Functional characterization of the antibiotic resistance reservoir in the human microflora
-
Sommer, M.O.A., Dantas, G., Church, G.M., Functional characterization of the antibiotic resistance reservoir in the human microflora. Science 325 (2009), 1128–1131.
-
(2009)
Science
, vol.325
, pp. 1128-1131
-
-
Sommer, M.O.A.1
Dantas, G.2
Church, G.M.3
-
50
-
-
78650045540
-
The phage-host arms race: shaping the evolution of microbes
-
Stern, A., Sorek, R., The phage-host arms race: shaping the evolution of microbes. Bioessays 33 (2011), 43–51.
-
(2011)
Bioessays
, vol.33
, pp. 43-51
-
-
Stern, A.1
Sorek, R.2
-
51
-
-
85046162899
-
A hyperthermophilic phage decoration protein suggests common evolutionary origin with herpesvirus triplex proteins and an anti-CRISPR protein
-
Stone, N.P., Hilbert, B.J., Hidalgo, D., Halloran, K.T., Lee, J., Sontheimer, E.J., Kelch, B.A., A hyperthermophilic phage decoration protein suggests common evolutionary origin with herpesvirus triplex proteins and an anti-CRISPR protein. Structure 26 (2018), 936–947.e3.
-
(2018)
Structure
, vol.26
, pp. 936-947.e3
-
-
Stone, N.P.1
Hilbert, B.J.2
Hidalgo, D.3
Halloran, K.T.4
Lee, J.5
Sontheimer, E.J.6
Kelch, B.A.7
-
52
-
-
34548792911
-
Marine viruses — major players in the global ecosystem
-
Suttle, C.A., Marine viruses — major players in the global ecosystem. Nat. Rev. Microbiol. 5 (2007), 801–812.
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 801-812
-
-
Suttle, C.A.1
-
53
-
-
85049967548
-
The evolving interface between synthetic biology and functional metagenomics
-
van der Helm, E., Genee, H.J., Sommer, M.O.A., The evolving interface between synthetic biology and functional metagenomics. Nat. Chem. Biol. 14 (2018), 752–759.
-
(2018)
Nat. Chem. Biol.
, vol.14
, pp. 752-759
-
-
van der Helm, E.1
Genee, H.J.2
Sommer, M.O.A.3
-
54
-
-
85020173676
-
Rapid resistome mapping using nanopore sequencing
-
van der Helm, E., Imamovic, L., Hashim Ellabaan, M.M.H., Van Schaik, W., Koza, A., Sommer, M.O.A., Rapid resistome mapping using nanopore sequencing. Nucleic Acids Res., 45, 2017, gkw1328.
-
(2017)
Nucleic Acids Res.
, vol.45
, pp. gkw1328
-
-
van der Helm, E.1
Imamovic, L.2
Hashim Ellabaan, M.M.H.3
Van Schaik, W.4
Koza, A.5
Sommer, M.O.A.6
-
55
-
-
84964433283
-
The diversity-generating benefits of a prokaryotic adaptive immune system
-
van Houte, S., Ekroth, A.K.E., Broniewski, J.M., Chabas, H., Ashby, B., Bondy-Denomy, J., Gandon, S., Boots, M., Paterson, S., Buckling, A., et al. The diversity-generating benefits of a prokaryotic adaptive immune system. Nature 532 (2016), 385–388.
-
(2016)
Nature
, vol.532
, pp. 385-388
-
-
van Houte, S.1
Ekroth, A.K.E.2
Broniewski, J.M.3
Chabas, H.4
Ashby, B.5
Bondy-Denomy, J.6
Gandon, S.7
Boots, M.8
Paterson, S.9
Buckling, A.10
-
56
-
-
84876845227
-
Cytotoxic chromosomal targeting by CRISPR/cas systems can reshape bacterial genomes and expel or remodel pathogenicity islands
-
Vercoe, R.B., Chang, J.T., Dy, R.L., Taylor, C., Gristwood, T., Clulow, J.S., Richter, C., Przybilski, R., Pitman, A.R., Fineran, P.C., Cytotoxic chromosomal targeting by CRISPR/cas systems can reshape bacterial genomes and expel or remodel pathogenicity islands. PLoS Genet., 9, 2013, e1003454.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003454
-
-
Vercoe, R.B.1
Chang, J.T.2
Dy, R.L.3
Taylor, C.4
Gristwood, T.5
Clulow, J.S.6
Richter, C.7
Przybilski, R.8
Pitman, A.R.9
Fineran, P.C.10
-
57
-
-
84899105533
-
CRISPR–Cas systems: beyond adaptive immunity
-
Westra, E.R., Buckling, A., Fineran, P.C., CRISPR–Cas systems: beyond adaptive immunity. Nat. Rev. Microbiol. 12 (2014), 317–326.
-
(2014)
Nat. Rev. Microbiol.
, vol.12
, pp. 317-326
-
-
Westra, E.R.1
Buckling, A.2
Fineran, P.C.3
-
58
-
-
84994582573
-
Application of the MAFFT sequence alignment program to large data-reexamination of the usefulness of chained guide trees
-
Yamada, K.D., Tomii, K., Katoh, K., Application of the MAFFT sequence alignment program to large data-reexamination of the usefulness of chained guide trees. Bioinformatics 32 (2016), 3246–3251.
-
(2016)
Bioinformatics
, vol.32
, pp. 3246-3251
-
-
Yamada, K.D.1
Tomii, K.2
Katoh, K.3
-
59
-
-
77955902981
-
Ab initio gene identification in metagenomic sequences
-
Zhu, W., Lomsadze, A., Borodovsky, M., Ab initio gene identification in metagenomic sequences. Nucleic Acids Res., 38, 2010, e132.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. e132
-
-
Zhu, W.1
Lomsadze, A.2
Borodovsky, M.3
|