-
1
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
pmid:19043404, PubMed Central PMCID: PMC2677729
-
Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, et al. A core gut microbiome in obese and lean twins. Nature. 2009;457(7228):480–4. doi: 10.1038/nature07540 pmid: 19043404; PubMed Central PMCID: PMC2677729
-
(2009)
Nature
, vol.457
, Issue.7228
, pp. 480-484
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
Duncan, A.5
Ley, R.E.6
-
2
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
pmid:20203603, PubMed Central PMCID: PMC3779803
-
Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 2010;464(7285):59–65. doi: 10.1038/nature08821 pmid: 20203603; PubMed Central PMCID: PMC3779803
-
(2010)
Nature
, vol.464
, Issue.7285
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
-
3
-
-
84862173705
-
A core human microbiome as viewed through 16S rRNA sequence clusters
-
pmid:22719824, PubMed Central PMCID: PMC3374614
-
Huse SM, Ye Y, Zhou Y, Fodor AA, A core human microbiome as viewed through 16S rRNA sequence clusters. PLoS ONE. 2012;7(6):e34242. doi: 10.1371/journal.pone.0034242 pmid: 22719824; PubMed Central PMCID: PMC3374614
-
(2012)
PLoS ONE
, vol.7
, Issue.6
, pp. e34242
-
-
Huse, S.M.1
Ye, Y.2
Zhou, Y.3
Fodor, A.A.4
-
4
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
pmid:21885731, PubMed Central PMCID: PMC3368382
-
Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, Keilbaugh SA, et al. Linking long-term dietary patterns with gut microbial enterotypes. Science. 2011;334(6052):105–8. doi: 10.1126/science.1208344 pmid: 21885731; PubMed Central PMCID: PMC3368382
-
(2011)
Science
, vol.334
, Issue.6052
, pp. 105-108
-
-
Wu, G.D.1
Chen, J.2
Hoffmann, C.3
Bittinger, K.4
Chen, Y.Y.5
Keilbaugh, S.A.6
-
5
-
-
79956301905
-
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
-
pmid:21596990
-
Muegge BD, Kuczynski J, Knights D, Clemente JC, González A, Fontana L, et al. Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science. 2011;332:970–4. doi: 10.1126/science.1198719 pmid: 21596990
-
(2011)
Science
, vol.332
, pp. 970-974
-
-
Muegge, B.D.1
Kuczynski, J.2
Knights, D.3
Clemente, J.C.4
González, A.5
Fontana, L.6
-
6
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
pmid:22699609, PubMed Central PMCID: PMC3564958
-
Human Microbiome Project C.Structure, function and diversity of the healthy human microbiome. Nature. 2012;486(7402):207–14. doi: 10.1038/nature11234 pmid: 22699609; PubMed Central PMCID: PMC3564958
-
(2012)
Nature
, vol.486
, Issue.7402
, pp. 207-214
-
-
-
7
-
-
84892828465
-
Diet rapidly and reproducibly alters the human gut microbiome
-
pmid:24336217
-
David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature. 2013;505(7484):559–63. doi: 10.1038/nature12820 pmid: 24336217
-
(2013)
Nature
, vol.505
, Issue.7484
, pp. 559-563
-
-
David, L.A.1
Maurice, C.F.2
Carmody, R.N.3
Gootenberg, D.B.4
Button, J.E.5
Wolfe, B.E.6
-
8
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
pmid:22699611, PubMed Central PMCID: PMC3376388
-
Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, et al. Human gut microbiome viewed across age and geography. Nature. 2012;486(7402):222–7. doi: 10.1038/nature11053 pmid: 22699611; PubMed Central PMCID: PMC3376388
-
(2012)
Nature
, vol.486
, Issue.7402
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
Contreras, M.6
-
9
-
-
84950978760
-
Genome-Wide Association Studies of the Human Gut Microbiota
-
pmid:26528553, PubMed Central PMCID: PMC4631601
-
Davenport ER, Cusanovich DA, Michelini K, Barreiro LB, Ober C, Gilad Y, Genome-Wide Association Studies of the Human Gut Microbiota. PLoS ONE. 2015;10(11):e0140301. doi: 10.1371/journal.pone.0140301 pmid: 26528553; PubMed Central PMCID: PMC4631601
-
(2015)
PLoS ONE
, vol.10
, Issue.11
, pp. e0140301
-
-
Davenport, E.R.1
Cusanovich, D.A.2
Michelini, K.3
Barreiro, L.B.4
Ober, C.5
Gilad, Y.6
-
10
-
-
56649124715
-
The influence of sex, handedness, and washing on the diversity of hand surface bacteria
-
Fierera N, Hamadyc M, Lauberb CL, Knight R, The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Procedings of the National Academy of Sciences. 105(46)
-
Procedings of the National Academy of Sciences
, vol.105
, Issue.46
-
-
Fierera, N.1
Hamadyc, M.2
Lauberb, C.L.3
Knight, R.4
-
11
-
-
84867074831
-
A metagenome-wide association study of gut microbiota in type 2 diabetes
-
pmid:23023125
-
Qin J, Li Y, Cai Z, Li S, Zhu J, Zhang F, et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature. 2012;490(7418):55–60. doi: 10.1038/nature11450 pmid: 23023125
-
(2012)
Nature
, vol.490
, Issue.7418
, pp. 55-60
-
-
Qin, J.1
Li, Y.2
Cai, Z.3
Li, S.4
Zhu, J.5
Zhang, F.6
-
12
-
-
35348857386
-
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
-
Frank DN, Allison AL, Feldman RA, Boedeker EC, Harpaz N, Pace NR, Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Procedings of the National Academy of Sciences. 2007;(104):13780–5
-
(2007)
Procedings of the National Academy of Sciences
, Issue.104
, pp. 13780-13785
-
-
Frank, D.N.1
Allison, A.L.2
Feldman, R.A.3
Boedeker, E.C.4
Harpaz, N.5
Pace, N.R.6
-
13
-
-
84908348194
-
Meta-analyses of human gut microbes associated with obesity and IBD
-
pmid:25307765
-
Walters WA, Xu Z, Knight R, Meta-analyses of human gut microbes associated with obesity and IBD. FEBS Letters. 2014;588(22):4223–33. doi: 10.1016/j.febslet.2014.09.039 pmid: 25307765
-
(2014)
FEBS Letters
, vol.588
, Issue.22
, pp. 4223-4233
-
-
Walters, W.A.1
Xu, Z.2
Knight, R.3
-
14
-
-
84891585929
-
The gut microbiome modulates colon tumorigenesis
-
pmid:24194538, PubMed Central PMCID: PMC3892781
-
Zackular JP, Baxter NT, Iverson KD, Sadler WD, Petrosino JF, Chen GY, et al. The gut microbiome modulates colon tumorigenesis. MBio. 2013;4(6):e00692–13. doi: 10.1128/mBio.00692-13 pmid: 24194538; PubMed Central PMCID: PMC3892781
-
(2013)
MBio
, vol.4
, Issue.6
, pp. e00692-e00613
-
-
Zackular, J.P.1
Baxter, N.T.2
Iverson, K.D.3
Sadler, W.D.4
Petrosino, J.F.5
Chen, G.Y.6
-
15
-
-
84886019355
-
Deep sequencing identifies ethnicity-specific bacterial signatures in the oral microbiome
-
pmid:24194878, PubMed Central PMCID: PMC3806732
-
Mason MR, Nagaraja HN, Camerlengo T, Joshi V, Kumar PS, Deep sequencing identifies ethnicity-specific bacterial signatures in the oral microbiome. PLoS ONE. 2013;8(10):e77287. doi: 10.1371/journal.pone.0077287 pmid: 24194878; PubMed Central PMCID: PMC3806732
-
(2013)
PLoS ONE
, vol.8
, Issue.10
, pp. e77287
-
-
Mason, M.R.1
Nagaraja, H.N.2
Camerlengo, T.3
Joshi, V.4
Kumar, P.S.5
-
16
-
-
79952750340
-
Vaginal microbiome of reproductive-age women
-
Ravela J, Gajera P, Abdob ZG, Schneiderc M, Koeniga SSK, McCullea SL, et al. Vaginal microbiome of reproductive-age women. Procedings of the National Academy of Sciences. 2011;108:4680–7
-
(2011)
Procedings of the National Academy of Sciences
, vol.108
, pp. 4680-4687
-
-
Ravela, J.1
Gajera, P.2
Abdob, Z.G.3
Schneiderc, M.4
Koeniga, S.S.K.5
McCullea, S.L.6
-
17
-
-
84908078004
-
Differences in vaginal microbiome in African American women versus women of European ancestry
-
pmid:25073854, PubMed Central PMCID: PMC4178329
-
Fettweis JM, Brooks JP, Serrano MG, Sheth NU, Girerd PH, Edwards DJ, et al. Differences in vaginal microbiome in African American women versus women of European ancestry. Microbiology. 2014;160(Pt 10):2272–82. doi: 10.1099/mic.0.081034-0 pmid: 25073854; PubMed Central PMCID: PMC4178329
-
(2014)
Microbiology
, vol.160
, pp. 2272-2282
-
-
Fettweis, J.M.1
Brooks, J.P.2
Serrano, M.G.3
Sheth, N.U.4
Girerd, P.H.5
Edwards, D.J.6
-
18
-
-
84963956776
-
Understanding associations among race, socioeconomic status, and health: Patterns and prospects
-
pmid:27018733, PubMed Central PMCID: PMC4817358
-
Williams DR, Priest N, Anderson NB, Understanding associations among race, socioeconomic status, and health: Patterns and prospects. Health Psychology. 2016;35(4):407–11. doi: 10.1037/hea0000242 pmid: 27018733; PubMed Central PMCID: PMC4817358
-
(2016)
Health Psychology
, vol.35
, Issue.4
, pp. 407-411
-
-
Williams, D.R.1
Priest, N.2
Anderson, N.B.3
-
19
-
-
84927709444
-
Self-reported race/ethnicity in the age of genomic research: its potential impact on understanding health disparities
-
pmid:25563503
-
Mersha TB, Abebe T, Self-reported race/ethnicity in the age of genomic research: its potential impact on understanding health disparities. Human Genomics. 2015;9(1):1. doi: 10.1186/s40246-014-0023-x pmid: 25563503
-
(2015)
Human Genomics
, vol.9
, Issue.1
, pp. 1
-
-
Mersha, T.B.1
Abebe, T.2
-
20
-
-
85041177384
-
Host genetic variation and its microbiome interactions within the Human Microbiome Project
-
pmid:29378630, PubMed Central PMCID: PMC5789541
-
Kolde R, Franzosa EA, Rahnavard G, Hall AB, Vlamakis H, Stevens C, et al. Host genetic variation and its microbiome interactions within the Human Microbiome Project. Genome Medicine. 2018;10(1):6. doi: 10.1186/s13073-018-0515-8 pmid: 29378630; PubMed Central PMCID: PMC5789541
-
(2018)
Genome Medicine
, vol.10
, Issue.1
, pp. 6
-
-
Kolde, R.1
Franzosa, E.A.2
Rahnavard, G.3
Hall, A.B.4
Vlamakis, H.5
Stevens, C.6
-
21
-
-
84996584385
-
The microbiome of uncontacted Amerindians
-
pmid:26229982, PubMed Central PMCID: PMC4517851
-
Clemente JC PE, Blaser MJ, Sandhu K, Gao K, Wang B, Magda M, Hidalgo G, et al. The microbiome of uncontacted Amerindians. Science Advances. 2015;3. doi: 10.1126/sciadv.1500183 PubMed Central PMCID: PMC4517851. pmid: 26229982
-
(2015)
Science Advances
, vol.3
-
-
Clemente JC, P.E.1
Blaser, M.J.2
Sandhu, K.3
Gao, K.4
Wang, B.5
Magda, M.6
Hidalgo, G.7
-
22
-
-
84937519881
-
Metagenome Sequencing of the Hadza Hunter-Gatherer Gut Microbiota
-
pmid:25981789
-
Rampelli S, Schnorr SL, Consolandi C, Turroni S, Severgnini M, Peano C, et al. Metagenome Sequencing of the Hadza Hunter-Gatherer Gut Microbiota. Curr Biol. 2015;25(13):1682–93. doi: 10.1016/j.cub.2015.04.055 pmid: 25981789
-
(2015)
Curr Biol
, vol.25
, Issue.13
, pp. 1682-1693
-
-
Rampelli, S.1
Schnorr, S.L.2
Consolandi, C.3
Turroni, S.4
Severgnini, M.5
Peano, C.6
-
23
-
-
85028451429
-
Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania
-
pmid:28839072
-
Smits SA, Leach J, Sonnenburg ED, Gonzalez CG, Lichtman JS, Reid G, et al. Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania. Science. 2017;357:802–6. doi: 10.1126/science.aan4834 pmid: 28839072
-
(2017)
Science
, vol.357
, pp. 802-806
-
-
Smits, S.A.1
Leach, J.2
Sonnenburg, E.D.3
Gonzalez, C.G.4
Lichtman, J.S.5
Reid, G.6
-
24
-
-
84984655015
-
Context and the human microbiome
-
pmid:26530830, PubMed Central PMCID: PMC4632476
-
McDonald D, Birmingham A, Knight R, Context and the human microbiome. Microbiome. 2015;3:52. doi: 10.1186/s40168-015-0117-2 pmid: 26530830; PubMed Central PMCID: PMC4632476
-
(2015)
Microbiome
, vol.3
, pp. 52
-
-
McDonald, D.1
Birmingham, A.2
Knight, R.3
-
25
-
-
84941647822
-
Host genetic variation impacts microbiome composition across human body sites
-
pmid:26374288, PubMed Central PMCID: PMC4570153
-
Blekhman R, Goodrich JK, Huang K, Sun Q, Bukowski R, Bell JT, et al. Host genetic variation impacts microbiome composition across human body sites. Genome Biology. 2015;16:191. doi: 10.1186/s13059-015-0759-1 pmid: 26374288; PubMed Central PMCID: PMC4570153
-
(2015)
Genome Biology
, vol.16
, pp. 191
-
-
Blekhman, R.1
Goodrich, J.K.2
Huang, K.3
Sun, Q.4
Bukowski, R.5
Bell, J.T.6
-
26
-
-
85043351358
-
Environment dominates over host genetics in shaping human gut microbiota
-
pmid:29489753
-
Rothschild D, Weissbrod O, Barkan E, Kurilshikov A, Korem T, Zeevi D, et al. Environment dominates over host genetics in shaping human gut microbiota. Nature. 2018;555(7695):210–5. doi: 10.1038/nature25973 pmid: 29489753
-
(2018)
Nature
, vol.555
, Issue.7695
, pp. 210-215
-
-
Rothschild, D.1
Weissbrod, O.2
Barkan, E.3
Kurilshikov, A.4
Korem, T.5
Zeevi, D.6
-
27
-
-
85053046009
-
Depicting the composition of gut microbiota in a population with varied ethnic origins but shared geography
-
pmid:30150717
-
Deschasaux M, Bouter KE, Prodan A, Levin E, Groen AK, Herrema H, et al. Depicting the composition of gut microbiota in a population with varied ethnic origins but shared geography. Nature Medicine. 2018. doi: 10.1038/s41591-018-0160-1 pmid: 30150717
-
(2018)
Nature Medicine
-
-
Deschasaux, M.1
Bouter, K.E.2
Prodan, A.3
Levin, E.4
Groen, A.K.5
Herrema, H.6
-
28
-
-
0027804103
-
Non-parametric multivariate analyses of changes in community structure
-
Clarke KR, Non-parametric multivariate analyses of changes in community structure. Australian Journal of Ecology. 1993;18:117–43
-
(1993)
Australian Journal of Ecology
, vol.18
, pp. 117-143
-
-
Clarke, K.R.1
-
29
-
-
0027806622
-
A method of linking multivariate community structure to environmental variables
-
Clarke KR, Ainsworth M, A method of linking multivariate community structure to environmental variables. Marine Ecology. 1993;92:205–19
-
(1993)
Marine Ecology
, vol.92
, pp. 205-219
-
-
Clarke, K.R.1
Ainsworth, M.2
-
30
-
-
79251625980
-
Supervised classification of human microbiota
-
pmid:21039646
-
Knights D, Costello EK, Knight R, Supervised classification of human microbiota. FEMS Microbiol Rev. 2011;35(2):343–59. doi: 10.1111/j.1574-6976.2010.00251.x pmid: 21039646
-
(2011)
FEMS Microbiol Rev
, vol.35
, Issue.2
, pp. 343-359
-
-
Knights, D.1
Costello, E.K.2
Knight, R.3
-
31
-
-
84940644968
-
A mathematical theory of communication
-
Shannon CE, A mathematical theory of communication. Bell Syst Tech J. 1948;27:379–423
-
(1948)
Bell Syst Tech J
, vol.27
, pp. 379-423
-
-
Shannon, C.E.1
-
32
-
-
84946771694
-
Stable and sporadic symbiotic communities of coral and algal holobionts
-
pmid:26555246, PubMed Central PMCID: PMC5029208
-
Hester ER, Barott KL, Nulton J, Vermeij MJ, Rohwer FL, Stable and sporadic symbiotic communities of coral and algal holobionts. ISME. 2016;10(5):1157–69. doi: 10.1038/ismej.2015.190 pmid: 26555246; PubMed Central PMCID: PMC5029208
-
(2016)
ISME
, vol.10
, Issue.5
, pp. 1157-1169
-
-
Hester, E.R.1
Barott, K.L.2
Nulton, J.3
Vermeij, M.J.4
Rohwer, F.L.5
-
33
-
-
0346586663
-
SMOTE: Synthetic Minority Over-sampling Technique
-
N.V. C, K.W. B, L.O. H, W.P. K
-
N.V. C, K.W. B, L.O. H, W.P. K. SMOTE: Synthetic Minority Over-sampling Technique. Journal of Artificial Intelligence Research. 2002;16:321–57
-
(2002)
Journal of Artificial Intelligence Research
, vol.16
, pp. 321-357
-
-
-
34
-
-
84910096224
-
Human genetics shape the gut microbiome
-
pmid:25417156, PubMed Central PMCID: PMC4255478
-
Goodrich JK, Waters JL, Poole AC, Sutter JL, Koren O, Blekhman R, et al. Human genetics shape the gut microbiome. Cell. 2014;159(4):789–99. doi: 10.1016/j.cell.2014.09.053 pmid: 25417156; PubMed Central PMCID: PMC4255478
-
(2014)
Cell
, vol.159
, Issue.4
, pp. 789-799
-
-
Goodrich, J.K.1
Waters, J.L.2
Poole, A.C.3
Sutter, J.L.4
Koren, O.5
Blekhman, R.6
-
35
-
-
84969492201
-
Genetic Determinants of the Gut Microbiome in UK Twins
-
pmid:27173935, PubMed Central PMCID: PMC4915943
-
Goodrich JK, Davenport ER, Beaumont M, Jackson MA, Knight R, Ober C, et al. Genetic Determinants of the Gut Microbiome in UK Twins. Cell Host Microbe. 2016;19(5):731–43. doi: 10.1016/j.chom.2016.04.017 pmid: 27173935; PubMed Central PMCID: PMC4915943
-
(2016)
Cell Host Microbe
, vol.19
, Issue.5
, pp. 731-743
-
-
Goodrich, J.K.1
Davenport, E.R.2
Beaumont, M.3
Jackson, M.A.4
Knight, R.5
Ober, C.6
-
36
-
-
84942870086
-
The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids
-
pmid:26358192, PubMed Central PMCID: PMC4596485
-
Fu J, Bonder MJ, Cenit MC, Tigchelaar EF, Maatman A, Dekens JA, et al. The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids. Circulation Research. 2015;117(9):817–24. doi: 10.1161/CIRCRESAHA.115.306807 pmid: 26358192; PubMed Central PMCID: PMC4596485
-
(2015)
Circulation Research
, vol.117
, Issue.9
, pp. 817-824
-
-
Fu, J.1
Bonder, M.J.2
Cenit, M.C.3
Tigchelaar, E.F.4
Maatman, A.5
Dekens, J.A.6
-
37
-
-
37549066390
-
-
pmid:18096770
-
Pennisi E., Human Genetic Variation. Science. 2007;318(5858):1842–3. doi: 10.1126/science.318.5858.1842 pmid: 18096770
-
(2007)
Human Genetic Variation. Science
, vol.318
, Issue.5858
, pp. 1842-1843
-
-
Pennisi, E.1
-
38
-
-
84943171338
-
A global reference for human genetic variation
-
pmid:26432245, PubMed Central PMCID: PMC4750478
-
Genomes Project C, Auton A, Brooks LD, Durbin RM, Garrison EP, Kang HM, et al. A global reference for human genetic variation. Nature. 2015;526(7571):68–74. doi: 10.1038/nature15393 pmid: 26432245; PubMed Central PMCID: PMC4750478
-
(2015)
Nature
, vol.526
, Issue.7571
, pp. 68-74
-
-
Genomes Project, C.1
Auton, A.2
Brooks, L.D.3
Durbin, R.M.4
Garrison, E.P.5
Kang, H.M.6
-
39
-
-
84963958983
-
The effect of heritability and host genetics on the gut microbiota and metabolic syndrome
-
pmid:27053630
-
Lim MY, You HJ, Yoon HS, Kwon B, Lee JY, Lee S, et al. The effect of heritability and host genetics on the gut microbiota and metabolic syndrome. Gut. 2016. doi: 10.1136/gutjnl-2015-311326 pmid: 27053630
-
(2016)
Gut
-
-
Lim, M.Y.1
You, H.J.2
Yoon, H.S.3
Kwon, B.4
Lee, J.Y.5
Lee, S.6
-
40
-
-
84989943149
-
Association of host genome with intestinal microbial composition in a large healthy cohort
-
pmid:27694960
-
Turpin W, Espin-Garcia O, Xu W, Silverberg MS, Kevans D, Smith MI, et al. Association of host genome with intestinal microbial composition in a large healthy cohort. Nature Genetics. 2016;48(11):1413–7. doi: 10.1038/ng.3693 pmid: 27694960
-
(2016)
Nature Genetics
, vol.48
, Issue.11
, pp. 1413-1417
-
-
Turpin, W.1
Espin-Garcia, O.2
Xu, W.3
Silverberg, M.S.4
Kevans, D.5
Smith, M.I.6
-
41
-
-
0031966959
-
Multipoint quantitative-trait linkage analysis in general pedigrees
-
pmid:9545414, PubMed Central PMCID: PMC1377101
-
Almasy L, Blangero J, Multipoint quantitative-trait linkage analysis in general pedigrees. American Journal of Human Genetics. 1998;62(5):1198–211. doi: 10.1086/301844 pmid: 9545414; PubMed Central PMCID: PMC1377101
-
(1998)
American Journal of Human Genetics
, vol.62
, Issue.5
, pp. 1198-1211
-
-
Almasy, L.1
Blangero, J.2
-
42
-
-
85043351358
-
Environmental factors dominate over host genetics in shaping human gut microbiota composition
-
Rothschild D, Weissbrod O, Barkan E, Korem T, Zeevi D, Costea PI, et al. Environmental factors dominate over host genetics in shaping human gut microbiota composition. Nature. 2018. doi: 10.1038/nature25973
-
(2018)
Nature
-
-
Rothschild, D.1
Weissbrod, O.2
Barkan, E.3
Korem, T.4
Zeevi, D.5
Costea, P.I.6
-
43
-
-
84866549438
-
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
-
Morgan XC, Tickle TL, Sokol H, Gevers D, Huttenhower C, Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment. Genome Biology. 2012;7(979)
-
(2012)
Genome Biology
, vol.7
, Issue.979
-
-
Morgan, X.C.1
Tickle, T.L.2
Sokol, H.3
Gevers, D.4
Huttenhower, C.5
-
44
-
-
84944220492
-
Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn's Disease
-
pmid:26468751, PubMed Central PMCID: PMC4633303
-
Lewis JD, Chen EZ, Baldassano RN, Otley AR, Griffiths AM, Lee D, et al. Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn's Disease. Cell Host Microbe. 2015;18(4):489–500. doi: 10.1016/j.chom.2015.09.008 pmid: 26468751; PubMed Central PMCID: PMC4633303
-
(2015)
Cell Host Microbe
, vol.18
, Issue.4
, pp. 489-500
-
-
Lewis, J.D.1
Chen, E.Z.2
Baldassano, R.N.3
Otley, A.R.4
Griffiths, A.M.5
Lee, D.6
-
45
-
-
80053534911
-
Complete genome sequence of Odoribacter splanchnicus type strain (1651/6)
-
pmid:21677857, PubMed Central PMCID: PMC3111987
-
Goker M, Gronow S, Zeytun A, Nolan M, Lucas S, Lapidus A, et al. Complete genome sequence of Odoribacter splanchnicus type strain (1651/6). Standards in Genomic Science. 2011;4(2):200–9. doi: 10.4056/sigs.1714269 pmid: 21677857; PubMed Central PMCID: PMC3111987
-
(2011)
Standards in Genomic Science
, vol.4
, Issue.2
, pp. 200-209
-
-
Goker, M.1
Gronow, S.2
Zeytun, A.3
Nolan, M.4
Lucas, S.5
Lapidus, A.6
-
46
-
-
85028613210
-
Race/Ethnicity-Specific Disparities in the Severity of Disease at Presentation in Adults with Ulcerative Colitis: A Cross-Sectional Study
-
pmid:28856475
-
Castaneda G, Liu B, Torres S, Bhuket T, Wong RJ, Race/Ethnicity-Specific Disparities in the Severity of Disease at Presentation in Adults with Ulcerative Colitis: A Cross-Sectional Study. Dig Dis Sci. 2017. doi: 10.1007/s10620-017-4733-5 pmid: 28856475
-
(2017)
Dig Dis Sci
-
-
Castaneda, G.1
Liu, B.2
Torres, S.3
Bhuket, T.4
Wong, R.J.5
-
47
-
-
84875372913
-
The hindgut lumen prokaryotic microbiota of the termite Reticulitermes flavipes and its responses to dietary lignocellulose composition
-
pmid:23379767
-
Boucias DG, Cai Y, Sun Y, Lietze VU, Sen R, Raychoudhury R, et al. The hindgut lumen prokaryotic microbiota of the termite Reticulitermes flavipes and its responses to dietary lignocellulose composition. Molecular Ecology. 2013;22(7):1836–53. doi: 10.1111/mec.12230 pmid: 23379767
-
(2013)
Molecular Ecology
, vol.22
, Issue.7
, pp. 1836-1853
-
-
Boucias, D.G.1
Cai, Y.2
Sun, Y.3
Lietze, V.U.4
Sen, R.5
Raychoudhury, R.6
-
48
-
-
0017661523
-
Fermentation of Cellulose by Ruminococcus flavefaciens in the Presence and Absence of Methanobacterium ruminantium
-
pmid:562131
-
Latham MJ, Wolin MJ, Fermentation of Cellulose by Ruminococcus flavefaciens in the Presence and Absence of Methanobacterium ruminantium. Applied Environmental Microbiology. 1977;34(3):297–301. pmid: 562131
-
(1977)
Applied Environmental Microbiology
, vol.34
, Issue.3
, pp. 297-301
-
-
Latham, M.J.1
Wolin, M.J.2
-
49
-
-
84968918909
-
Population-level analysis of gut microbiome variation
-
pmid:27126039
-
Falony G, Raes J, Population-level analysis of gut microbiome variation. Science. 2016;352(6285):560–4. doi: 10.1126/science.aad3503 pmid: 27126039
-
(2016)
Science
, vol.352
, Issue.6285
, pp. 560-564
-
-
Falony, G.1
Raes, J.2
-
50
-
-
84966681522
-
Gut Microbiota and Extreme Longevity
-
pmid:27185560
-
Biagi E, Franceschi C, Rampelli S, Severgnini M, Ostan R, Turroni S, et al. Gut Microbiota and Extreme Longevity. Current Biology. 2016;26(11):1480–5. doi: 10.1016/j.cub.2016.04.016 pmid: 27185560
-
(2016)
Current Biology
, vol.26
, Issue.11
, pp. 1480-1485
-
-
Biagi, E.1
Franceschi, C.2
Rampelli, S.3
Severgnini, M.4
Ostan, R.5
Turroni, S.6
-
51
-
-
85017379523
-
Age-Associated Microbial Dysbiosis Promotes Intestinal Permeability, Systemic Inflammation, and Macrophage Dysfunction
-
pmid:28407483
-
Thevaranjan N, Puchta A, Schulz C, Naidoo A, Szamosi JC, Verschoor CP, et al. Age-Associated Microbial Dysbiosis Promotes Intestinal Permeability, Systemic Inflammation, and Macrophage Dysfunction. Cell Host Microbe. 2017;21(4):455–66 e4. doi: 10.1016/j.chom.2017.03.002 pmid: 28407483
-
(2017)
Cell Host Microbe
, vol.21
, Issue.4
, pp. 455-66 e4
-
-
Thevaranjan, N.1
Puchta, A.2
Schulz, C.3
Naidoo, A.4
Szamosi, J.C.5
Verschoor, C.P.6
-
52
-
-
84878256943
-
Genetic Variants Associated With Glycine Metabolism and Their Role in Insulin Sensitivity and Type 2 Diabetes
-
Xie W, Wood AR, Lyssenko V, Genetic Variants Associated With Glycine Metabolism and Their Role in Insulin Sensitivity and Type 2 Diabetes. Diabetes. 2013;62. doi: 10.2337/db12-0876/-/DC1
-
(2013)
Diabetes
, vol.62
-
-
Xie, W.1
Wood, A.R.2
Lyssenko, V.3
-
53
-
-
84897410252
-
Genome-wide meta-analysis of homocysteine and methionine metabolism identifies five one carbon metabolism loci and a novel association of ALDH1L1 with ischemic stroke
-
pmid:24651765, PubMed Central PMCID: PMC3961178
-
Williams SR, Yang Q, Chen F, Liu X, Keene KL, Jacques P, et al. Genome-wide meta-analysis of homocysteine and methionine metabolism identifies five one carbon metabolism loci and a novel association of ALDH1L1 with ischemic stroke. PLoS Genet. 2014;10(3):e1004214. doi: 10.1371/journal.pgen.1004214 pmid: 24651765; PubMed Central PMCID: PMC3961178
-
(2014)
PLoS Genet
, vol.10
, Issue.3
, pp. e1004214
-
-
Williams, S.R.1
Yang, Q.2
Chen, F.3
Liu, X.4
Keene, K.L.5
Jacques, P.6
-
54
-
-
85034604499
-
Community characteristics of the gut microbiomes of competitive cyclists
-
pmid:28797298, PubMed Central PMCID: PMC5553673
-
Petersen LM, Bautista EJ, Nguyen H, Hanson BM, Chen L, Lek SH, et al. Community characteristics of the gut microbiomes of competitive cyclists. Microbiome. 2017;5(1):98. doi: 10.1186/s40168-017-0320-4 pmid: 28797298; PubMed Central PMCID: PMC5553673
-
(2017)
Microbiome
, vol.5
, Issue.1
, pp. 98
-
-
Petersen, L.M.1
Bautista, E.J.2
Nguyen, H.3
Hanson, B.M.4
Chen, L.5
Lek, S.H.6
-
55
-
-
77954577597
-
Mechanisms of microbial hydrogen disposal in the human colon and implications for health and disease
-
pmid:22129341
-
Nakamura N, Lin HC, McSweeney CS, Mackie RI, Gaskins HR, Mechanisms of microbial hydrogen disposal in the human colon and implications for health and disease. Annual Review of Food Science and Technology. 2010;1:363–95. doi: 10.1146/annurev.food.102308.124101 pmid: 22129341
-
(2010)
Annual Review of Food Science and Technology
, vol.1
, pp. 363-395
-
-
Nakamura, N.1
Lin, H.C.2
McSweeney, C.S.3
Mackie, R.I.4
Gaskins, H.R.5
-
56
-
-
84959453587
-
Relationship Between Microbiota of the Colonic Mucosa vs Feces and Symptoms, Colonic Transit, and Methane Production in Female Patients With Chronic Constipation
-
pmid:26460205, PubMed Central PMCID: PMC4727996
-
Parthasarathy G, Chen J, Chen X, Chia N, O'Connor HM, Wolf PG, et al. Relationship Between Microbiota of the Colonic Mucosa vs Feces and Symptoms, Colonic Transit, and Methane Production in Female Patients With Chronic Constipation. Gastroenterology. 2016;150(2):367–79 e1. doi: 10.1053/j.gastro.2015.10.005 pmid: 26460205; PubMed Central PMCID: PMC4727996
-
(2016)
Gastroenterology
, vol.150
, Issue.2
, pp. 367-79 e1
-
-
Parthasarathy, G.1
Chen, J.2
Chen, X.3
Chia, N.4
O'Connor, H.M.5
Wolf, P.G.6
-
57
-
-
84995751237
-
Health disparities in colorectal cancer among racial and ethnic minorities in the United States
-
pmid:27034811, PubMed Central PMCID: PMC4783613
-
Jackson CS, Oman M, Patel AM, Vega KJ, Health disparities in colorectal cancer among racial and ethnic minorities in the United States. Journal Gastrointestinal Oncology. 2016;7(Suppl 1):S32–43. doi: 10.3978/j.issn.2078-6891.2015.039 pmid: 27034811; PubMed Central PMCID: PMC4783613
-
(2016)
Journal Gastrointestinal Oncology
, vol.7
, pp. S32-S43
-
-
Jackson, C.S.1
Oman, M.2
Patel, A.M.3
Vega, K.J.4
-
60
-
-
84885449131
-
Colorectal Cancer Screening among Asian Americans
-
pmid:23991947
-
Hwang H., Colorectal Cancer Screening among Asian Americans. Asian Pacific Journal of Cancer Prevention. 2013;14(7):4025–32. doi: 10.7314/apjcp.2013.14.7.4025 pmid: 23991947
-
(2013)
Asian Pacific Journal of Cancer Prevention
, vol.14
, Issue.7
, pp. 4025-4032
-
-
Hwang, H.1
-
61
-
-
84868028115
-
Colorectal Cancer Screening Knowledge, Beliefs, and Practices of Korean Americans
-
pmid:23985185
-
Oh KM, Kreps GL, Jun J, Colorectal Cancer Screening Knowledge, Beliefs, and Practices of Korean Americans. American Journal of Health Behavior. 2013;37(3):381–94. doi: 10.5993/AJHB.37.3.11 pmid: 23985185
-
(2013)
American Journal of Health Behavior
, vol.37
, Issue.3
, pp. 381-394
-
-
Oh, K.M.1
Kreps, G.L.2
Jun, J.3
-
62
-
-
85055249203
-
US Immigration Westernizes the Human Gut Microbiome
-
pmid:30388453, 1
-
Vangay P, Johnson AJ, Ward TL, Al-Ghalith GA, Shields-Cutler RR, Hillmann BM, et al. US Immigration Westernizes the Human Gut Microbiome. Cell. 2018. 1;175(4):962–972.e10. doi: 10.1016/j.cell.2018.10.029 pmid: 30388453
-
(2018)
Cell
, vol.175
, Issue.4
, pp. 962-972.e10
-
-
Vangay, P.1
Johnson, A.J.2
Ward, T.L.3
Al-Ghalith, G.A.4
Shields-Cutler, R.R.5
Hillmann, B.M.6
-
63
-
-
85059499060
-
Managing the changing burden of cancer in Asia
-
Sankaranarayanan R, Ramadas K, Qiao Y-l, Managing the changing burden of cancer in Asia. BMC Medicine. 2014;12(3). doi: 10.1186/1741-7015-12-12
-
(2014)
BMC Medicine
, vol.12
, Issue.3
-
-
Sankaranarayanan, R.1
Ramadas, K.2
Qiao, Y.-L.3
-
64
-
-
84872224254
-
Increased burden of colorectal cancer in Asia
-
pmid:22532878, PubMed Central PMCID: PMC3334381
-
Pourhoseingholi MA, Increased burden of colorectal cancer in Asia. World Journal Gastrointestinal Oncology. 2012;4(4):68–70. doi: 10.4251/wjgo.v4.i4.68 pmid: 22532878; PubMed Central PMCID: PMC3334381
-
(2012)
World Journal Gastrointestinal Oncology
, vol.4
, Issue.4
, pp. 68-70
-
-
Pourhoseingholi, M.A.1
-
66
-
-
84983279457
-
Epidemiology and burden of colorectal cancer in Asia-Pacific region: what shall we do now?
-
Pourhoseingholi MA, Epidemiology and burden of colorectal cancer in Asia-Pacific region: what shall we do now?Translational Gastrointestinal Cancer. 2014;3(4):169–73
-
(2014)
Translational Gastrointestinal Cancer
, vol.3
, Issue.4
, pp. 169-173
-
-
Pourhoseingholi, M.A.1
-
67
-
-
85059497670
-
-
Report CHDaI
-
Report CHDaI. 2013
-
(2013)
-
-
-
68
-
-
85028766330
-
Dysbiosis contributes to chronic constipation development via regulation of serotonin transporter in the intestine
-
pmid:28871143, PubMed Central PMCID: PMC5583244
-
Cao H, Liu X, An Y, Zhou G, Liu Y, Xu M, et al. Dysbiosis contributes to chronic constipation development via regulation of serotonin transporter in the intestine. Scientific Reports. 2017;7(1):10322. doi: 10.1038/s41598-017-10835-8 pmid: 28871143; PubMed Central PMCID: PMC5583244
-
(2017)
Scientific Reports
, vol.7
, Issue.1
, pp. 10322
-
-
Cao, H.1
Liu, X.2
An, Y.3
Zhou, G.4
Liu, Y.5
Xu, M.6
-
69
-
-
84964374640
-
Gut Microbiota Diversity and Human Diseases: Should We Reintroduce Key Predators in Our Ecosystem?
-
pmid:27065999, PubMed Central PMCID: PMC4815357
-
Mosca A, Leclerc M, Hugot JP, Gut Microbiota Diversity and Human Diseases: Should We Reintroduce Key Predators in Our Ecosystem?Frontiers in Microbiology. 2016;7:455. doi: 10.3389/fmicb.2016.00455 pmid: 27065999; PubMed Central PMCID: PMC4815357
-
(2016)
Frontiers in Microbiology
, vol.7
, pp. 455
-
-
Mosca, A.1
Leclerc, M.2
Hugot, J.P.3
-
70
-
-
84938817346
-
The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment
-
pmid:26214836
-
Zhang X, Zhang D, Jia H, Feng Q, Wang D, Liang D, et al. The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment. Nature Medicine. 2015;21(8):895–905. doi: 10.1038/nm.3914 pmid: 26214836
-
(2015)
Nature Medicine
, vol.21
, Issue.8
, pp. 895-905
-
-
Zhang, X.1
Zhang, D.2
Jia, H.3
Feng, Q.4
Wang, D.5
Liang, D.6
-
71
-
-
84981194392
-
Koch's postulates, microbial dysbiosis and inflammatory bowel disease
-
pmid:27179648
-
Singh VP, Proctor SD, Willing BP, Koch's postulates, microbial dysbiosis and inflammatory bowel disease. Clinicl Microbiol Infect. 2016;22(7):594–9. doi: 10.1016/j.cmi.2016.04.018 pmid: 27179648
-
(2016)
Clinicl Microbiol Infect
, vol.22
, Issue.7
, pp. 594-599
-
-
Singh, V.P.1
Proctor, S.D.2
Willing, B.P.3
-
72
-
-
0342996880
-
dbSNP: the NCBI database of genetic variation
-
Sherry ST WM, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K, dbSNP: the NCBI database of genetic variation. Nucleic Acids Research. 2001;29(308)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.308
-
-
Sherry ST, W.M.1
Kholodov, M.2
Baker, J.3
Phan, L.4
Smigielski, E.M.5
Sirotkin, K.6
-
73
-
-
84878682420
-
The Genotype-Tissue Expression (GTEx) project
-
pmid:23715323, PubMed Central PMCID: PMC4010069
-
Consortium GTThe Genotype-Tissue Expression (GTEx) project. Nat Genet. 2013;45(6):580–5. doi: 10.1038/ng.2653 PubMed Central PMCID: PMC4010069. pmid: 23715323
-
(2013)
Nat Genet
, vol.45
, Issue.6
, pp. 580-585
-
-
-
74
-
-
84971528855
-
NEDL2 regulates enteric nervous system and kidney development in its Nedd8 ligase activity-dependent manner
-
Qiu X, Wei R, Li Y, Zhu Q, Xiong C, Chen Y, et al. NEDL2 regulates enteric nervous system and kidney development in its Nedd8 ligase activity-dependent manner. Oncotarget. 2016;7(21)
-
(2016)
Oncotarget
, vol.7
, Issue.21
-
-
Qiu, X.1
Wei, R.2
Li, Y.3
Zhu, Q.4
Xiong, C.5
Chen, Y.6
-
75
-
-
84922630317
-
NEDL2 is an essential regulator of enteric neural development and GDNF/Ret signaling
-
pmid:25555806
-
Wei R, Qiu X, Wang S, Li Y, Wang Y, Lu K, et al. NEDL2 is an essential regulator of enteric neural development and GDNF/Ret signaling. Cell Signal. 2015;27(3):578–86. doi: 10.1016/j.cellsig.2014.12.013 pmid: 25555806
-
(2015)
Cell Signal
, vol.27
, Issue.3
, pp. 578-586
-
-
Wei, R.1
Qiu, X.2
Wang, S.3
Li, Y.4
Wang, Y.5
Lu, K.6
-
76
-
-
84991387516
-
Decreased expression of NEDL2 in Hirschsprung's disease
-
pmid:27430863
-
O'Donnell AM, Coyle D, Puri P, Decreased expression of NEDL2 in Hirschsprung's disease. Journal of Pediatric Surgery. 2016;51(11):1839–42. doi: 10.1016/j.jpedsurg.2016.06.016 pmid: 27430863
-
(2016)
Journal of Pediatric Surgery
, vol.51
, Issue.11
, pp. 1839-1842
-
-
O'Donnell, A.M.1
Coyle, D.2
Puri, P.3
-
77
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
pmid:20383131
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nature Methods. 2010;7:335–6. doi: 10.1038/nmeth.f.303 pmid: 20383131
-
(2010)
Nature Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
-
78
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
pmid:16820507, PubMed Central PMCID: PMC1489311
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied Environmental Microbiology. 2006;72(7):5069–72. doi: 10.1128/AEM.03006-05 pmid: 16820507; PubMed Central PMCID: PMC1489311
-
(2006)
Applied Environmental Microbiology
, vol.72
, Issue.7
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
-
79
-
-
84863981120
-
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
-
pmid:22402401, PubMed Central PMCID: PMC3400413
-
Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, et al. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME Journal. 2012;6(8):1621–4. doi: 10.1038/ismej.2012.8 pmid: 22402401; PubMed Central PMCID: PMC3400413
-
(2012)
ISME Journal
, vol.6
, Issue.8
, pp. 1621-1624
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
Berg-Lyons, D.4
Huntley, J.5
Fierer, N.6
-
80
-
-
0002154022
-
A new method for non-parametric multivariate analysis of variance
-
Anderson MJ, A new method for non-parametric multivariate analysis of variance. Australian Journal of Ecology. 2001;26:32–46
-
(2001)
Australian Journal of Ecology
, vol.26
, pp. 32-46
-
-
Anderson, M.J.1
-
81
-
-
84876427223
-
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data
-
pmid:23630581
-
McMurdie PJ, Holmes S, phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS ONE. 2013;8:e61217. doi: 10.1371/journal.pone.0061217 pmid: 23630581
-
(2013)
PLoS ONE
, vol.8
, pp. e61217
-
-
McMurdie, P.J.1
Holmes, S.2
-
84
-
-
79960405019
-
The variant call format and VCFtools
-
pmid:21653522, PubMed Central PMCID: PMC3137218
-
Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, et al. The variant call format and VCFtools. Bioinformatics. 2011;27(15):2156–8. doi: 10.1093/bioinformatics/btr330 pmid: 21653522; PubMed Central PMCID: PMC3137218
-
(2011)
Bioinformatics
, vol.27
, Issue.15
, pp. 2156-2158
-
-
Danecek, P.1
Auton, A.2
Abecasis, G.3
Albers, C.A.4
Banks, E.5
DePristo, M.A.6
|