메뉴 건너뛰기




Volumn 7, Issue MAR, 2016, Pages

Gut microbiota diversity and human diseases: Should we reintroduce key predators in our ecosystem?

Author keywords

Bdellovibrio bacteriovorus; Chronic human conditions; Dysbiosis; Ecosystem; Predator; Western lifestyle

Indexed keywords

ANTIBIOTIC AGENT;

EID: 84964374640     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2016.00455     Document Type: Article
Times cited : (457)

References (131)
  • 2
    • 84891473723 scopus 로고    scopus 로고
    • Human gut microbiome and risk for colorectal cancer
    • Ahn, J., Sinha, R., Pei, Z., Dominianni, C., Wu, J., Shi, J., et al. (2013). Human gut microbiome and risk for colorectal cancer. J. Natl. Cancer Inst. 105, 1907-1911. doi: 10.1093/jnci/djt300
    • (2013) J. Natl. Cancer Inst , vol.105 , pp. 1907-1911
    • Ahn, J.1    Sinha, R.2    Pei, Z.3    Dominianni, C.4    Wu, J.5    Shi, J.6
  • 3
    • 50049126125 scopus 로고    scopus 로고
    • Resistance, resilience, and redundancy in microbial communities
    • Allison, S. D., and Martiny, J. B. H. (2008). Resistance, resilience, and redundancy in microbial communities. Proc. Natl. Acad. Sci. U.S.A. 105, 11512-11519. doi: 10.1073/pnas.0801925105
    • (2008) Proc. Natl. Acad. Sci. U.S.A , vol.105 , pp. 11512-11519
    • Allison, S.D.1    Martiny, J.B.H.2
  • 4
    • 33646577825 scopus 로고    scopus 로고
    • Investigating the hygiene hypothesis as a risk factor in pediatric onset crohn's disease: a case-control study
    • Amre, D. K., Lambrette, P., Law, L., Krupoves, A., Chotard, V., Costea, F., et al. (2006). Investigating the hygiene hypothesis as a risk factor in pediatric onset crohn's disease: a case-control study. Am. J. Gastroenterol. 101, 1005-1011. doi: 10.1111/j.1572-0241.2006.00526.x
    • (2006) Am. J. Gastroenterol , vol.101 , pp. 1005-1011
    • Amre, D.K.1    Lambrette, P.2    Law, L.3    Krupoves, A.4    Chotard, V.5    Costea, F.6
  • 5
    • 84905963118 scopus 로고    scopus 로고
    • Prevalence and incidence of diabetes in stockholm county 1990-2010
    • Andersson, T., Ahlbom, A., Magnusson, C., and Carlsson, S. (2014). Prevalence and incidence of diabetes in stockholm county 1990-2010. PLoS ONE 9:e104033. doi: 10.1371/journal.pone.0104033
    • (2014) PLoS ONE , vol.9
    • Andersson, T.1    Ahlbom, A.2    Magnusson, C.3    Carlsson, S.4
  • 6
    • 85027947787 scopus 로고    scopus 로고
    • Induction of colonic regulatory t cells by indigenous clostridium species
    • Atarashi, K., Tanoue, T., Shima, T., Imaoka, A., Kuwahara, T., Momose, Y., et al. (2011). Induction of colonic regulatory t cells by indigenous clostridium species. Science 331, 337-341. doi: 10.1126/science.1198469
    • (2011) Science , vol.331 , pp. 337-341
    • Atarashi, K.1    Tanoue, T.2    Shima, T.3    Imaoka, A.4    Kuwahara, T.5    Momose, Y.6
  • 7
    • 84908026637 scopus 로고    scopus 로고
    • The increasing prevalence of reported diagnoses of childhood psychiatric disorders: a descriptive multinational comparison
    • Atladottir, H. O., Gyllenberg, D., Langridge, A., Sandin, S., Hansen, S. N., Leonard, H., et al. (2015). The increasing prevalence of reported diagnoses of childhood psychiatric disorders: a descriptive multinational comparison. Eur. Child Adolesc. Psychiatry 24, 173-183. doi: 10.1007/s00787-014-0553-8
    • (2015) Eur. Child Adolesc. Psychiatry , vol.24 , pp. 173-183
    • Atladottir, H.O.1    Gyllenberg, D.2    Langridge, A.3    Sandin, S.4    Hansen, S.N.5    Leonard, H.6
  • 8
    • 80052626632 scopus 로고    scopus 로고
    • Effects of orally administered Bdellovibrio bacteriovorus on the well-being and salmonella colonization of young chicks
    • Atterbury, R. J., Hobley, L., Till, R., Lambert, C., Capeness, M. J., Lerner, T. R., et al. (2011). Effects of orally administered Bdellovibrio bacteriovorus on the well-being and salmonella colonization of young chicks. Appl. Environ. Microbiol. 77, 5794-5803. doi: 10.1128/AEM.00426-11
    • (2011) Appl. Environ. Microbiol , vol.77 , pp. 5794-5803
    • Atterbury, R.J.1    Hobley, L.2    Till, R.3    Lambert, C.4    Capeness, M.J.5    Lerner, T.R.6
  • 10
    • 84919663788 scopus 로고    scopus 로고
    • Gut microbiome and multiple sclerosis
    • Bhargava, P., and Mowry, E. M. (2014). Gut microbiome and multiple sclerosis. Curr. Neurol. Neurosci. Rep. 14:492. doi: 10.1007/s11910-014-0492-2
    • (2014) Curr. Neurol. Neurosci. Rep , vol.14 , pp. 492
    • Bhargava, P.1    Mowry, E.M.2
  • 11
    • 0026560497 scopus 로고
    • Evidence for an environmental effect in the aetiology of insulin dependent diabetes in a transmigratory population
    • Bodansky, H. J., Staines, A., Stephenson, C., Haigh, D., and Cartwright, R. (1992). Evidence for an environmental effect in the aetiology of insulin dependent diabetes in a transmigratory population. BMJ 304, 1020-1022. doi: 10.1136/bmj.304.6833.1020
    • (1992) BMJ , vol.304 , pp. 1020-1022
    • Bodansky, H.J.1    Staines, A.2    Stephenson, C.3    Haigh, D.4    Cartwright, R.5
  • 12
    • 84857067037 scopus 로고    scopus 로고
    • Profound alterations of intestinal microbiota following a single dose of clindamycin results in sustained susceptibility to clostridium difficile-induced colitis
    • Buffie, C. G., Jarchum, I., Equinda, M., Lipuma, L., Gobourne, A., Viale, A., et al. (2012). Profound alterations of intestinal microbiota following a single dose of clindamycin results in sustained susceptibility to clostridium difficile-induced colitis. Infect. Immun. 80, 62-73. doi: 10.1128/IAI.05496-11
    • (2012) Infect. Immun , vol.80 , pp. 62-73
    • Buffie, C.G.1    Jarchum, I.2    Equinda, M.3    Lipuma, L.4    Gobourne, A.5    Viale, A.6
  • 14
    • 84887960425 scopus 로고    scopus 로고
    • Intestinal microbial diversity during early-life colonization shapes long-term IgE levels
    • Cahenzli, J., Köller, Y., Wyss, M., Geuking, M. B., and McCoy, K. D. (2013). Intestinal microbial diversity during early-life colonization shapes long-term IgE levels. Cell Host Microbe 14, 559-570. doi: 10.1016/j.chom.2013.10.004
    • (2013) Cell Host Microbe , vol.14 , pp. 559-570
    • Cahenzli, J.1    Köller, Y.2    Wyss, M.3    Geuking, M.B.4    McCoy, K.D.5
  • 15
    • 84909594702 scopus 로고    scopus 로고
    • Infectious etiopathogenesis of Crohn's disease
    • Carrière, J. (2014). Infectious etiopathogenesis of Crohn's disease. World J. Gastroenterol. 20:12102. doi: 10.3748/wjg.v20.i34.12102
    • (2014) World J. Gastroenterol , vol.20 , pp. 12102
    • Carrière, J.1
  • 16
    • 84861185968 scopus 로고    scopus 로고
    • Alterations in composition and diversity of the intestinal microbiota in patients with diarrhea-predominant irritable bowel syndrome
    • Carroll, I. M., Ringel-Kulka, T., Siddle, J. P., and Ringel, Y. (2012). Alterations in composition and diversity of the intestinal microbiota in patients with diarrhea-predominant irritable bowel syndrome. Neurogastroenterol. Motil. 24, 521-530. doi: 10.1111/j.1365-2982.2012.01891.x
    • (2012) Neurogastroenterol. Motil , vol.24 , pp. 521-530
    • Carroll, I.M.1    Ringel-Kulka, T.2    Siddle, J.P.3    Ringel, Y.4
  • 17
    • 39349107697 scopus 로고    scopus 로고
    • Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea
    • Chang, J. Y., Antonopoulos, D. A., Kalra, A., Tonelli, A., Khalife, W. T., Schmidt, T. M., et al. (2008). Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea. J. Infect. Dis. 197, 435-438. doi: 10.1086/525047
    • (2008) J. Infect. Dis , vol.197 , pp. 435-438
    • Chang, J.Y.1    Antonopoulos, D.A.2    Kalra, A.3    Tonelli, A.4    Khalife, W.T.5    Schmidt, T.M.6
  • 18
    • 45849088407 scopus 로고    scopus 로고
    • Eat, kill or die: when amoeba meets bacteria
    • Cosson, P., and Soldati, T. (2008). Eat, kill or die: when amoeba meets bacteria. Curr. Opin. Microbiol. 11, 271-276. doi: 10.1016/j.mib.2008.05.005
    • (2008) Curr. Opin. Microbiol , vol.11 , pp. 271-276
    • Cosson, P.1    Soldati, T.2
  • 19
    • 84861992014 scopus 로고    scopus 로고
    • The application of ecological theory toward an understanding of the human microbiome
    • Costello, E. K., Stagaman, K., Dethlefsen, L., Bohannan, B. J. M., and Relman, D. A. (2012). The application of ecological theory toward an understanding of the human microbiome. Science 336, 1255-1262. doi: 10.1126/science.1224203
    • (2012) Science , vol.336 , pp. 1255-1262
    • Costello, E.K.1    Stagaman, K.2    Dethlefsen, L.3    Bohannan, B.J.M.4    Relman, D.A.5
  • 20
    • 84883057637 scopus 로고    scopus 로고
    • Dietary intervention impact on gut microbial gene richness
    • Cotillard, A., Kennedy, S. P., Kong, L. C., Prifti, E., Pons, N., Le Chatelier, E., et al. (2013). Dietary intervention impact on gut microbial gene richness. Nature 500, 585-588. doi: 10.1038/nature12480
    • (2013) Nature , vol.500 , pp. 585-588
    • Cotillard, A.1    Kennedy, S.P.2    Kong, L.C.3    Prifti, E.4    Pons, N.5    Le Chatelier, E.6
  • 21
    • 77953318829 scopus 로고    scopus 로고
    • Age-and sex-related prevalence of diabetes mellitus among immigrants to Ontario, Canada
    • Creatore, M. I., Moineddin, R., Booth, G., Manuel, D. H., DesMeules, M., McDermott, S., et al. (2010). Age-and sex-related prevalence of diabetes mellitus among immigrants to Ontario, Canada. Can. Med. Assoc. J. 182, 781-789. doi: 10.1503/cmaj.091551
    • (2010) Can. Med. Assoc. J , vol.182 , pp. 781-789
    • Creatore, M.I.1    Moineddin, R.2    Booth, G.3    Manuel, D.H.4    DesMeules, M.5    McDermott, S.6
  • 22
    • 78650997196 scopus 로고    scopus 로고
    • Predation of human pathogens by the predatory bacteria Micavibrio aeruginosavorus and Bdellovibrio bacteriovorus: predation by M. aeruginosavorus and B. bacteriovorus
    • Dashiff, A., Junka, R. A., Libera, M., and Kadouri, D. E. (2011). Predation of human pathogens by the predatory bacteria Micavibrio aeruginosavorus and Bdellovibrio bacteriovorus: predation by M. aeruginosavorus and B. bacteriovorus. J. Appl. Microbiol. 110, 431-444. doi: 10.1111/j.1365-2672.2010.04900.x
    • (2011) J. Appl. Microbiol , vol.110 , pp. 431-444
    • Dashiff, A.1    Junka, R.A.2    Libera, M.3    Kadouri, D.E.4
  • 23
    • 84892828465 scopus 로고    scopus 로고
    • Diet rapidly and reproducibly alters the human gut microbiome
    • David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., et al. (2013). Diet rapidly and reproducibly alters the human gut microbiome. Nature 505, 559-563. doi: 10.1038/nature12820
    • (2013) Nature , vol.505 , pp. 559-563
    • David, L.A.1    Maurice, C.F.2    Carmody, R.N.3    Gootenberg, D.B.4    Button, J.E.5    Wolfe, B.E.6
  • 24
    • 84887259304 scopus 로고    scopus 로고
    • European society of clinical microbiology and infectious diseases: update of the treatment guidance document for Clostridium difficile infection
    • Debast, S. B., Bauer, M. P., Kuijper, E. J., and on behalf of the Committee (2014). European society of clinical microbiology and infectious diseases: update of the treatment guidance document for Clostridium difficile infection. Clin. Microbiol. Infect. 20, 1-26. doi: 10.1111/1469-0691.12418
    • (2014) Clin. Microbiol. Infect , vol.20 , pp. 1-26
    • Debast, S.B.1    Bauer, M.P.2    Kuijper, E.J.3
  • 25
    • 77957075815 scopus 로고    scopus 로고
    • Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
    • De Filippo, C., Cavalieri, D., Di Paola, M., Ramazzotti, M., Poullet, J. B., Massart, S., et al. (2010). Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc. Natl. Acad. Sci. U.S.A. 107, 14691-14696. doi: 10.1073/pnas.1005963107
    • (2010) Proc. Natl. Acad. Sci. U.S.A , vol.107 , pp. 14691-14696
    • De Filippo, C.1    Cavalieri, D.2    Di Paola, M.3    Ramazzotti, M.4    Poullet, J.B.5    Massart, S.6
  • 26
    • 84872592295 scopus 로고    scopus 로고
    • Fecal microbiota composition differs between children with-cell autoimmunity and those without
    • De Goffau, M. C., Luopajarvi, K., Knip, M., Ilonen, J., Ruohtula, T., Harkonen, T., et al. (2013). Fecal microbiota composition differs between children with-cell autoimmunity and those without. Diabetes 62, 1238-1244. doi: 10.2337/db12-0526
    • (2013) Diabetes , vol.62 , pp. 1238-1244
    • De Goffau, M.C.1    Luopajarvi, K.2    Knip, M.3    Ilonen, J.4    Ruohtula, T.5    Harkonen, T.6
  • 27
    • 56849106496 scopus 로고    scopus 로고
    • The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
    • Dethlefsen, L., Huse, S., Sogin, M. L., and Relman, D. A. (2008). The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol. 6:e280. doi: 10.1371/journal.pbio.0060280
    • (2008) PLoS Biol , vol.6
    • Dethlefsen, L.1    Huse, S.2    Sogin, M.L.3    Relman, D.A.4
  • 28
    • 84882297193 scopus 로고    scopus 로고
    • Association of gut microbiota with post-operative clinical course in Crohn's disease
    • Dey, N., Soergel, D. A., Repo, S., and Brenner, S. E. (2013). Association of gut microbiota with post-operative clinical course in Crohn's disease. BMC Gastroenterol. 13:131. doi: 10.1186/1471-230X-13-131
    • (2013) BMC Gastroenterol , vol.13 , pp. 131
    • Dey, N.1    Soergel, D.A.2    Repo, S.3    Brenner, S.E.4
  • 29
    • 43749118759 scopus 로고    scopus 로고
    • Antibiotic losses in leaching and surface runoff from manure-amended agricultural land
    • Dolliver, H., and Gupta, S. (2008). Antibiotic losses in leaching and surface runoff from manure-amended agricultural land. J. Environ. Qual. 37, 1227-1237. doi: 10.2134/jeq2007.0392
    • (2008) J. Environ. Qual , vol.37 , pp. 1227-1237
    • Dolliver, H.1    Gupta, S.2
  • 30
    • 84942581015 scopus 로고    scopus 로고
    • Does maternal perinatal probiotic supplementation alter the intestinal microbiota of mother and child?
    • Dotterud, C. K., Avershina, E., Sekelja, M., Simpson, M. R., Rudi, K., Storrø, O., et al. (2015). Does maternal perinatal probiotic supplementation alter the intestinal microbiota of mother and child? J. Pediatr. Gastroenterol. Nutr. 61, 200-207. doi: 10.1097/MPG.0000000000000781
    • (2015) J. Pediatr. Gastroenterol. Nutr , vol.61 , pp. 200-207
    • Dotterud, C.K.1    Avershina, E.2    Sekelja, M.3    Simpson, M.R.4    Rudi, K.5    Storrø, O.6
  • 31
    • 84858604441 scopus 로고    scopus 로고
    • Structural alterations of faecal and mucosa-associated bacterial communities in irritable bowel syndrome: microbial diversity in irritable bowel syndrome
    • Durbán, A., Abellán, J. J., Jiménez-Hernández, N., Salgado, P., Ponce, M., Ponce, J., et al. (2012). Structural alterations of faecal and mucosa-associated bacterial communities in irritable bowel syndrome: microbial diversity in irritable bowel syndrome. Environ. Microbiol. Rep. 4, 242-247. doi: 10.1111/j.1758-2229.2012.00327.x
    • (2012) Environ. Microbiol. Rep , vol.4 , pp. 242-247
    • Durbán, A.1    Abellán, J.J.2    Jiménez-Hernández, N.3    Salgado, P.4    Ponce, M.5    Ponce, J.6
  • 32
    • 84857747366 scopus 로고    scopus 로고
    • The dual probiotic and antibiotic nature of Bdellovibrio bacteriovorus
    • Dwidar, M., Monnappa, A. K., and Mitchell, R. J. (2012). The dual probiotic and antibiotic nature of Bdellovibrio bacteriovorus. BMB Rep. 45, 71-78. doi: 10.5483/BMBRep.2012.45.2.71
    • (2012) BMB Rep , vol.45 , pp. 71-78
    • Dwidar, M.1    Monnappa, A.K.2    Mitchell, R.J.3
  • 33
    • 33751213587 scopus 로고    scopus 로고
    • The asthma epidemic
    • Eder, W., Ege, M. J., and von Mutius, E. (2006). The asthma epidemic. N. Engl. J. Med. 355, 2226-2235. doi: 10.1056/NEJMra054308
    • (2006) N. Engl. J. Med , vol.355 , pp. 2226-2235
    • Eder, W.1    Ege, M.J.2    von Mutius, E.3
  • 35
    • 84863920287 scopus 로고    scopus 로고
    • Microbial interactions: from networks to models
    • Faust, K., and Raes, J. (2012). Microbial interactions: from networks to models. Nat. Rev. Microbiol. 10, 538-550. doi: 10.1038/nrmicro2832
    • (2012) Nat. Rev. Microbiol , vol.10 , pp. 538-550
    • Faust, K.1    Raes, J.2
  • 37
    • 60949098457 scopus 로고    scopus 로고
    • Ecological conditions affect evolutionary trajectory in a predator-prey system
    • Gallet, R., Tully, T., and Evans, M. E. K. (2009). Ecological conditions affect evolutionary trajectory in a predator-prey system. Evolution 63, 641-651. doi: 10.1111/j.1558-5646.2008.00559.x
    • (2009) Evolution , vol.63 , pp. 641-651
    • Gallet, R.1    Tully, T.2    Evans, M.E.K.3
  • 38
    • 78650616947 scopus 로고    scopus 로고
    • Toward defining the autoimmune microbiome for type 1 diabetes
    • Giongo, A., Gano, K. A., Crabb, D. B., Mukherjee, N., Novelo, L. L., Casella, G., et al. (2010). Toward defining the autoimmune microbiome for type 1 diabetes. ISME J. 5, 82-91. doi: 10.1038/ismej.2010.92
    • (2010) ISME J , vol.5 , pp. 82-91
    • Giongo, A.1    Gano, K.A.2    Crabb, D.B.3    Mukherjee, N.4    Novelo, L.L.5    Casella, G.6
  • 39
    • 84938846796 scopus 로고    scopus 로고
    • Contribution of diet to the composition of the human gut microbiota
    • Graf, D., Di Cagno, R., Fåk, F., Flint, H. J., Nyman, M., Saarela, M., et al. (2015). Contribution of diet to the composition of the human gut microbiota. Microb. Ecol. Health Dis. 26:26164. doi: 10.3402/mehd.v26.26164
    • (2015) Microb. Ecol. Health Dis , vol.26 , pp. 26164
    • Graf, D.1    Di Cagno, R.2    Fåk, F.3    Flint, H.J.4    Nyman, M.5    Saarela, M.6
  • 40
    • 0036231429 scopus 로고    scopus 로고
    • Cultural adaptation is associated with atopy and wheezing among children of Turkish origin living in Germany
    • Grüber, C., Illi, S., Plieth, A., Sommerfeld, C., and Wahn, U. (2002). Cultural adaptation is associated with atopy and wheezing among children of Turkish origin living in Germany. Clin. Exp. Allergy 32, 526-531. doi: 10.1046/j.0954-7894.2002.01331.x
    • (2002) Clin. Exp. Allergy , vol.32 , pp. 526-531
    • Grüber, C.1    Illi, S.2    Plieth, A.3    Sommerfeld, C.4    Wahn, U.5
  • 41
    • 84908549422 scopus 로고    scopus 로고
    • Decade in review-gut microbiota: the gut microbiota era marches on
    • Guarner, F. (2014). Decade in review-gut microbiota: the gut microbiota era marches on. Nat. Rev. Gastroenterol. Hepatol. 11, 647-649. doi: 10.1038/nrgastro.2014.156
    • (2014) Nat. Rev. Gastroenterol. Hepatol , vol.11 , pp. 647-649
    • Guarner, F.1
  • 42
    • 0034005675 scopus 로고    scopus 로고
    • The age-range of risk of developing multiple sclerosis: evidence from a migrant population in Australia
    • Hammond, S. R., English, D. R., and McLeod, J. G. (2000). The age-range of risk of developing multiple sclerosis: evidence from a migrant population in Australia. Brain J. Neurol. 123(Pt. 5), 968-974. doi: 10.1093/brain/123.5.968
    • (2000) Brain J. Neurol , vol.123 , pp. 968-974
    • Hammond, S.R.1    English, D.R.2    McLeod, J.G.3
  • 43
    • 43849096855 scopus 로고    scopus 로고
    • Time trends in the incidence of type 1 diabetes in Finnish children: a cohort study
    • Harjutsalo, V., Sjöberg, L., and Tuomilehto, J. (2008). Time trends in the incidence of type 1 diabetes in Finnish children: a cohort study. Lancet 371, 1777-1782. doi: 10.1016/S0140-6736(08)60765-5
    • (2008) Lancet , vol.371 , pp. 1777-1782
    • Harjutsalo, V.1    Sjöberg, L.2    Tuomilehto, J.3
  • 44
    • 0002054228 scopus 로고
    • Resilience and Stability of Ecological Systems
    • Holling, C. S. (1973). Resilience and Stability of Ecological Systems. Annu. Rev. Ecol. Syst. 4, 1-23. doi: 10.1146/annurev.es.04.110173.000245
    • (1973) Annu. Rev. Ecol. Syst , vol.4 , pp. 1-23
    • Holling, C.S.1
  • 45
    • 84938896400 scopus 로고    scopus 로고
    • Antibiotic exposure and juvenile idiopathic arthritis: a case-control study
    • Horton, D. B., Scott, F. I., Haynes, K., Putt, M. E., Rose, C. D., Lewis, J. D., et al. (2015). Antibiotic exposure and juvenile idiopathic arthritis: a case-control study. Pediatrics 136, e333-e343. doi: 10.1542/peds.2015-0036
    • (2015) Pediatrics , vol.136 , pp. e333-e343
    • Horton, D.B.1    Scott, F.I.2    Haynes, K.3    Putt, M.E.4    Rose, C.D.5    Lewis, J.D.6
  • 46
    • 0028162085 scopus 로고
    • Catastrophes, phase shifts, and large-scale degradation of a Caribbean coral reef
    • Hughes, T. P. (1994). Catastrophes, phase shifts, and large-scale degradation of a Caribbean coral reef. Science 265, 1547-1551. doi: 10.1126/science.265.5178.1547
    • (1994) Science , vol.265 , pp. 1547-1551
    • Hughes, T.P.1
  • 47
    • 84946822241 scopus 로고    scopus 로고
    • A network-based approach to disturbance transmission through microbial interactions
    • Hunt, D. E., and Ward, C. S. (2015). A network-based approach to disturbance transmission through microbial interactions. Front. Microbiol. 6:1182. doi: 10.3389/fmicb.2015.01182
    • (2015) Front. Microbiol , vol.6 , pp. 1182
    • Hunt, D.E.1    Ward, C.S.2
  • 48
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • Huttenhower, C., Gevers, D., Knight, R., Abubucker, S., Badger, J. H., Chinwalla, A. T., et al. (2012). Structure, function and diversity of the healthy human microbiome. Nature 486, 207-214. doi: 10.1038/nature11234
    • (2012) Nature , vol.486 , pp. 207-214
    • Huttenhower, C.1    Gevers, D.2    Knight, R.3    Abubucker, S.4    Badger, J.H.5    Chinwalla, A.T.6
  • 49
    • 78651252504 scopus 로고    scopus 로고
    • Antibiotic use and inflammatory bowel diseases in childhood
    • Hviid, A., Svanstrom, H., and Frisch, M. (2011). Antibiotic use and inflammatory bowel diseases in childhood. Gut 60, 49-54. doi: 10.1136/gut.2010.219683
    • (2011) Gut , vol.60 , pp. 49-54
    • Hviid, A.1    Svanstrom, H.2    Frisch, M.3
  • 50
    • 84876193651 scopus 로고    scopus 로고
    • Higher prevalence and abundance of Bdellovibrio bacteriovorus in the human gut of healthy subjects
    • Iebba, V., Santangelo, F., Totino, V., Nicoletti, M., Gagliardi, A., De Biase, R. V., et al. (2013). Higher prevalence and abundance of Bdellovibrio bacteriovorus in the human gut of healthy subjects. PLoS ONE 8:e61608. doi: 10.1371/annotation/b08ddcc9-dfdb-4fc1-b2ac-5a4af3051a91
    • (2013) PLoS ONE , vol.8
    • Iebba, V.1    Santangelo, F.2    Totino, V.3    Nicoletti, M.4    Gagliardi, A.5    De Biase, R.V.6
  • 51
    • 84905163082 scopus 로고    scopus 로고
    • Bdellovibrio bacteriovorus directly attacks Pseudomonas aeruginosa and Staphylococcus aureus Cystic fibrosis isolates
    • Iebba, V., Totino, V., Santangelo, F., Gagliardi, A., Ciotoli, L., Virga, A., et al. (2014). Bdellovibrio bacteriovorus directly attacks Pseudomonas aeruginosa and Staphylococcus aureus Cystic fibrosis isolates. Front. Microbiol. 5:280. doi: 10.3389/fmicb.2014.00280
    • (2014) Front. Microbiol , vol.5 , pp. 280
    • Iebba, V.1    Totino, V.2    Santangelo, F.3    Gagliardi, A.4    Ciotoli, L.5    Virga, A.6
  • 52
    • 84868193133 scopus 로고    scopus 로고
    • Reduced gut microbial diversity in early life is associated with later development of eczema but not atopy in high-risk infants: microbial diversity and infant eczema
    • Ismail, I. H., Oppedisano, F., Joseph, S. J., Boyle, R. J., Licciardi, P. V., Robins-Browne, R. M., et al. (2012). Reduced gut microbial diversity in early life is associated with later development of eczema but not atopy in high-risk infants: microbial diversity and infant eczema. Pediatr. Allergy Immunol. 23, 674-681. doi: 10.1111/j.1399-3038.2012.01328.x
    • (2012) Pediatr. Allergy Immunol , vol.23 , pp. 674-681
    • Ismail, I.H.1    Oppedisano, F.2    Joseph, S.J.3    Boyle, R.J.4    Licciardi, P.V.5    Robins-Browne, R.M.6
  • 53
    • 84890461111 scopus 로고    scopus 로고
    • Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by Caesarean section
    • Jakobsson, H. E., Abrahamsson, T. R., Jenmalm, M. C., Harris, K., Quince, C., Jernberg, C., et al. (2014). Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by Caesarean section. Gut 63, 559-566. doi: 10.1136/gutjnl-2012-303249
    • (2014) Gut , vol.63 , pp. 559-566
    • Jakobsson, H.E.1    Abrahamsson, T.R.2    Jenmalm, M.C.3    Harris, K.4    Quince, C.5    Jernberg, C.6
  • 54
    • 79960854386 scopus 로고    scopus 로고
    • Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms
    • Jalanka-Tuovinen, J., Salonen, A., Nikkilä, J., Immonen, O., Kekkonen, R., Lahti, L., et al. (2011). Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms. PLoS ONE 6:e23035. doi: 10.1371/journal.pone.0023035
    • (2011) PLoS ONE , vol.6
    • Jalanka-Tuovinen, J.1    Salonen, A.2    Nikkilä, J.3    Immonen, O.4    Kekkonen, R.5    Lahti, L.6
  • 55
    • 84861539347 scopus 로고    scopus 로고
    • Regulation of intestinal inflammation by microbiota following allogeneic bone marrow transplantation
    • Jenq, R. R., Ubeda, C., Taur, Y., Menezes, C. C., Khanin, R., Dudakov, J. A., et al. (2012). Regulation of intestinal inflammation by microbiota following allogeneic bone marrow transplantation. J. Exp. Med. 209, 903-911. doi: 10.1084/jem.20112408
    • (2012) J. Exp. Med , vol.209 , pp. 903-911
    • Jenq, R.R.1    Ubeda, C.2    Taur, Y.3    Menezes, C.C.4    Khanin, R.5    Dudakov, J.A.6
  • 56
    • 84877048448 scopus 로고    scopus 로고
    • Predatory bacteria: a potential ally against multidrug-resistant gram-negative pathogens
    • Kadouri, D. E., To, K., Shanks, R. M. Q., and Doi, Y. (2013). Predatory bacteria: a potential ally against multidrug-resistant gram-negative pathogens. PLoS ONE 8:e63397. doi: 10.1371/journal.pone.0063397
    • (2013) PLoS ONE , vol.8
    • Kadouri, D.E.1    To, K.2    Shanks, R.M.Q.3    Doi, Y.4
  • 57
    • 84879760435 scopus 로고    scopus 로고
    • Reduced incidence of prevotella and other fermenters in intestinal microflora of autistic children
    • Kang, D.-W., Park, J. G., Ilhan, Z. E., Wallstrom, G., LaBaer, J., Adams, J. B., et al. (2013). Reduced incidence of prevotella and other fermenters in intestinal microflora of autistic children. PLoS ONE 8:e68322. doi: 10.1371/journal.pone.0068322
    • (2013) PLoS ONE , vol.8
    • Kang, D.-W.1    Park, J.G.2    Ilhan, Z.E.3    Wallstrom, G.4    LaBaer, J.5    Adams, J.B.6
  • 58
  • 59
    • 84922941772 scopus 로고    scopus 로고
    • The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes
    • Kostic, A. D., Gevers, D., Siljander, H., Vatanen, T., Hyötyläinen, T., Hämäläinen, A.-M., et al. (2015). The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes. Cell Host Microbe 17, 260-273. doi: 10.1016/j.chom.2015.01.001
    • (2015) Cell Host Microbe , vol.17 , pp. 260-273
    • Kostic, A.D.1    Gevers, D.2    Siljander, H.3    Vatanen, T.4    Hyötyläinen, T.5    Hämäläinen, A.-M.6
  • 60
    • 33845799603 scopus 로고    scopus 로고
    • Asthma in young south Asian women living in the United Kingdom: the importance of early life
    • Kuehni, C. E., Strippoli, M.-P., Low, N., and Silverman, M. (2007). Asthma in young south Asian women living in the United Kingdom: the importance of early life. Clin. Exp. Allergy 37, 47-53. doi: 10.1111/j.1365-2222.2006.02627.x
    • (2007) Clin. Exp. Allergy , vol.37 , pp. 47-53
    • Kuehni, C.E.1    Strippoli, M.-P.2    Low, N.3    Silverman, M.4
  • 61
    • 19744378583 scopus 로고    scopus 로고
    • Trends in prevalence of asthma and allergy in Finnish young men: nationwide study, 1966-2003
    • Latvala, J., von Hertzen, L., Lindholm, H., and Haahtela, T. (2005). Trends in prevalence of asthma and allergy in Finnish young men: nationwide study, 1966-2003. BMJ 330, 1186-1187. doi: 10.1136/bmj.38448.603924.AE
    • (2005) BMJ , vol.330 , pp. 1186-1187
    • Latvala, J.1    von Hertzen, L.2    Lindholm, H.3    Haahtela, T.4
  • 62
    • 79960256782 scopus 로고    scopus 로고
    • Incidence trends of pediatric inflammatory bowel disease in Finland, 1987-2003, a nationwide study
    • Lehtinen, P., Ashorn, M., Iltanen, S., Jauhola, R., Jauhonen, P., Kolho, K.-L., et al. (2011). Incidence trends of pediatric inflammatory bowel disease in Finland, 1987-2003, a nationwide study. Inflamm. Bowel Dis. 17, 1778-1783. doi: 10.1002/ibd.21550
    • (2011) Inflamm. Bowel Dis , vol.17 , pp. 1778-1783
    • Lehtinen, P.1    Ashorn, M.2    Iltanen, S.3    Jauhola, R.4    Jauhonen, P.5    Kolho, K.-L.6
  • 63
    • 0021547579 scopus 로고
    • Spread of diadema mass mortality through the Caribbean
    • Lessios, H. A., Robertson, D. R., and Cubit, J. D. (1984). Spread of diadema mass mortality through the Caribbean. Science 226, 335-337. doi: 10.1126/science.226.4672.335
    • (1984) Science , vol.226 , pp. 335-337
    • Lessios, H.A.1    Robertson, D.R.2    Cubit, J.D.3
  • 64
    • 84859422400 scopus 로고    scopus 로고
    • Top predators as biodiversity regulators: the dingo Canis lupus dingo as a case study
    • Letnic, M., Ritchie, E. G., and Dickman, C. R. (2012). Top predators as biodiversity regulators: the dingo Canis lupus dingo as a case study. Biol. Rev. 87, 390-413. doi: 10.1111/j.1469-185X.2011.00203.x
    • (2012) Biol. Rev , vol.87 , pp. 390-413
    • Letnic, M.1    Ritchie, E.G.2    Dickman, C.R.3
  • 65
    • 52049092682 scopus 로고    scopus 로고
    • Worlds within worlds: evolution of the vertebrate gut microbiota
    • Ley, R. E., Lozupone, C. A., Hamady, M., Knight, R., and Gordon, J. I. (2008). Worlds within worlds: evolution of the vertebrate gut microbiota. Nat. Rev. Microbiol. 6, 776-788. doi: 10.1038/nrmicro1978
    • (2008) Nat. Rev. Microbiol , vol.6 , pp. 776-788
    • Ley, R.E.1    Lozupone, C.A.2    Hamady, M.3    Knight, R.4    Gordon, J.I.5
  • 66
    • 84872825519 scopus 로고    scopus 로고
    • Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States
    • Lin, A., Bik, E. M., Costello, E. K., Dethlefsen, L., Haque, R., Relman, D. A., et al. (2013). Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States. PLoS ONE 8:e53838. doi: 10.1371/journal.pone.0053838
    • (2013) PLoS ONE , vol.8
    • Lin, A.1    Bik, E.M.2    Costello, E.K.3    Dethlefsen, L.4    Haque, R.5    Relman, D.A.6
  • 67
    • 35448995656 scopus 로고    scopus 로고
    • Increasing prevalence of coeliac disease over time: increasing Prevalence Of Coeliac Disease
    • Lohi, S., Mustalahti, K., Kaukinen, K., Laurila, K., Collin, P., Rissanen, H., et al. (2007). Increasing prevalence of coeliac disease over time: increasing Prevalence Of Coeliac Disease. Aliment. Pharmacol. Ther. 26, 1217-1225. doi: 10.1111/j.1365-2036.2007.03502.x
    • (2007) Aliment. Pharmacol. Ther , vol.26 , pp. 1217-1225
    • Lohi, S.1    Mustalahti, K.2    Kaukinen, K.3    Laurila, K.4    Collin, P.5    Rissanen, H.6
  • 68
    • 84939570410 scopus 로고    scopus 로고
    • Effect of Bdellovibrio bacteriovorus HD100 on multispecies oral communities
    • Loozen, G., Boon, N., Pauwels, M., Slomka, V., Rodrigues Herrero, E., Quirynen, M., et al. (2015). Effect of Bdellovibrio bacteriovorus HD100 on multispecies oral communities. Anaerobe 35, 45-53. doi: 10.1016/j.anaerobe.2014.09.011
    • (2015) Anaerobe , vol.35 , pp. 45-53
    • Loozen, G.1    Boon, N.2    Pauwels, M.3    Slomka, V.4    Rodrigues Herrero, E.5    Quirynen, M.6
  • 69
    • 84862651150 scopus 로고    scopus 로고
    • Global prevalence of and risk factors for irritable bowel syndrome: a meta-analysis
    • 712-721.e4
    • Lovell, R. M., and Ford, A. C. (2012). Global prevalence of and risk factors for irritable bowel syndrome: a meta-analysis. Clin. Gastroenterol. Hepatol. 10, 712-721.e4. doi: 10.1016/j.cgh.2012.02.029
    • (2012) Clin. Gastroenterol. Hepatol , vol.10
    • Lovell, R.M.1    Ford, A.C.2
  • 70
    • 84866146940 scopus 로고    scopus 로고
    • Diversity, stability and resilience of the human gut microbiota
    • Lozupone, C. A., Stombaugh, J. I., Gordon, J. I., Jansson, J. K., and Knight, R. (2012). Diversity, stability and resilience of the human gut microbiota. Nature 489, 220-230. doi: 10.1038/nature11550
    • (2012) Nature , vol.489 , pp. 220-230
    • Lozupone, C.A.1    Stombaugh, J.I.2    Gordon, J.I.3    Jansson, J.K.4    Knight, R.5
  • 71
    • 30944466824 scopus 로고    scopus 로고
    • Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach
    • Manichanh, C., Rigottier-Gois, L., Bonnaud, E., Gloux, K., Pelletier, E., Frangeul, L., et al. (2006). Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach. Gut 55, 205-211. doi: 10.1136/gut.2005.073817
    • (2006) Gut , vol.55 , pp. 205-211
    • Manichanh, C.1    Rigottier-Gois, L.2    Bonnaud, E.3    Gloux, K.4    Pelletier, E.5    Frangeul, L.6
  • 72
    • 84928587108 scopus 로고    scopus 로고
    • The gut microbiota of rural papua new guineans: composition, diversity patterns, and ecological processes
    • Martínez, I., Stegen, J. C., Maldonado-Gómez, M. X., Eren, A. M., Siba, P. M., Greenhill, A. R., et al. (2015). The gut microbiota of rural papua new guineans: composition, diversity patterns, and ecological processes. Cell Rep. 11, 527-538. doi: 10.1016/j.celrep.2015.03.049
    • (2015) Cell Rep , vol.11 , pp. 527-538
    • Martínez, I.1    Stegen, J.C.2    Maldonado-Gómez, M.X.3    Eren, A.M.4    Siba, P.M.5    Greenhill, A.R.6
  • 73
    • 69249205465 scopus 로고    scopus 로고
    • Environmental pollution by antibiotics and by antibiotic resistance determinants
    • Martinez, J. L. (2009). Environmental pollution by antibiotics and by antibiotic resistance determinants. Environ. Pollut. 157, 2893-2902. doi: 10.1016/j.envpol.2009.05.051
    • (2009) Environ. Pollut , vol.157 , pp. 2893-2902
    • Martinez, J.L.1
  • 74
    • 84925486076 scopus 로고    scopus 로고
    • The gut microbiota and inflammatory bowel disease
    • Matsuoka, K., and Kanai, T. (2015). The gut microbiota and inflammatory bowel disease. Semin. Immunopathol. 37, 47-55. doi: 10.1007/s00281-014-0454-4
    • (2015) Semin. Immunopathol , vol.37 , pp. 47-55
    • Matsuoka, K.1    Kanai, T.2
  • 75
    • 0344442701 scopus 로고    scopus 로고
    • Incidence and prevalence of multiple sclerosis in Olmsted County, Minnesota, 1985-2000
    • Mayr, W. T., Pittock, S. J., McClelland, R. L., Jorgensen, N. W., Noseworthy, J. H., and Rodriguez, M. (2003). Incidence and prevalence of multiple sclerosis in Olmsted County, Minnesota, 1985-2000. Neurology 61, 1373-1377. doi: 10.1212/01.WNL.0000094316.90240.EB
    • (2003) Neurology , vol.61 , pp. 1373-1377
    • Mayr, W.T.1    Pittock, S.J.2    McClelland, R.L.3    Jorgensen, N.W.4    Noseworthy, J.H.5    Rodriguez, M.6
  • 76
    • 33846207822 scopus 로고    scopus 로고
    • Adaptive immunity: care for the community
    • McFall-Ngai, M. (2007). Adaptive immunity: care for the community. Nature 445, 153-153. doi: 10.1038/445153a
    • (2007) Nature , vol.445 , pp. 153-153
    • McFall-Ngai, M.1
  • 78
    • 84866348811 scopus 로고    scopus 로고
    • Alterations in the gut microbiome of children with severe ulcerative colitis
    • Michail, S., Durbin, M., Turner, D., Griffiths, A. M., Mack, D. R., Hyams, J., et al. (2012). Alterations in the gut microbiome of children with severe ulcerative colitis. Inflamm. Bowel Dis. 18, 1799-1808. doi: 10.1002/ibd.22860
    • (2012) Inflamm. Bowel Dis , vol.18 , pp. 1799-1808
    • Michail, S.1    Durbin, M.2    Turner, D.3    Griffiths, A.M.4    Mack, D.R.5    Hyams, J.6
  • 79
    • 84871860604 scopus 로고    scopus 로고
    • Movers and shakers: influence of bacteriophages in shaping the mammalian gut microbiota
    • Mills, S., Shanahan, F., Stanton, C., Hill, C., Coffey, A., and Ross, R. P. (2013). Movers and shakers: influence of bacteriophages in shaping the mammalian gut microbiota. Gut Microbes 4, 4-16. doi: 10.4161/gmic.22371
    • (2013) Gut Microbes , vol.4 , pp. 4-16
    • Mills, S.1    Shanahan, F.2    Stanton, C.3    Hill, C.4    Coffey, A.5    Ross, R.P.6
  • 80
    • 83755219473 scopus 로고    scopus 로고
    • Increasing incidence and prevalence of the inflammatory bowel diseases with time, based on systematic review
    • 46-54.e42
    • Molodecky, N. A., Soon, I. S., Rabi, D. M., Ghali, W. A., Ferris, M., Chernoff, G., et al. (2012). Increasing incidence and prevalence of the inflammatory bowel diseases with time, based on systematic review. Gastroenterology 142, 46-54.e42. doi: 10.1053/j.gastro.2011.10.001
    • (2012) Gastroenterology , vol.142
    • Molodecky, N.A.1    Soon, I.S.2    Rabi, D.M.3    Ghali, W.A.4    Ferris, M.5    Chernoff, G.6
  • 81
    • 84892979844 scopus 로고    scopus 로고
    • Bdellovibrio bacteriovorus inhibits staphylococcus aureus biofilm formation and invasion into human epithelial cells
    • Monnappa, A. K., Dwidar, M., Seo, J. K., Hur, J.-H., and Mitchell, R. J. (2014). Bdellovibrio bacteriovorus inhibits staphylococcus aureus biofilm formation and invasion into human epithelial cells. Sci. Rep. 4:3811. doi: 10.1038/srep03811
    • (2014) Sci. Rep , vol.4 , pp. 3811
    • Monnappa, A.K.1    Dwidar, M.2    Seo, J.K.3    Hur, J.-H.4    Mitchell, R.J.5
  • 82
    • 84949256787 scopus 로고    scopus 로고
    • Variation in rural african gut microbiota is strongly correlated with colonization by entamoeba and subsistence
    • Morton, E. R., Lynch, J., Froment, A., Lafosse, S., Heyer, E., Przeworski, M., et al. (2015). Variation in rural african gut microbiota is strongly correlated with colonization by entamoeba and subsistence. PLoS Genet. 11:e1005658. doi: 10.1371/journal.pgen.1005658
    • (2015) PLoS Genet , vol.11
    • Morton, E.R.1    Lynch, J.2    Froment, A.3    Lafosse, S.4    Heyer, E.5    Przeworski, M.6
  • 83
    • 84874652518 scopus 로고    scopus 로고
    • Geographical variability and environmental risk factors in inflammatory bowel disease
    • Ng, S. C., Bernstein, C. N., Vatn, M. H., Lakatos, P. L., Loftus, E. V., Tysk, C., et al. (2013). Geographical variability and environmental risk factors in inflammatory bowel disease. Gut 62, 630-649. doi: 10.1136/gutjnl-2012-303661
    • (2013) Gut , vol.62 , pp. 630-649
    • Ng, S.C.1    Bernstein, C.N.2    Vatn, M.H.3    Lakatos, P.L.4    Loftus, E.V.5    Tysk, C.6
  • 84
    • 0033802113 scopus 로고    scopus 로고
    • Coral reef disturbance and resilience in a human-dominated environment
    • Nyström, M., Folke, C., and Moberg, F. (2000). Coral reef disturbance and resilience in a human-dominated environment. Trends Ecol. Evol. 15, 413-417. doi: 10.1016/S0169-5347(00)01948-0
    • (2000) Trends Ecol. Evol , vol.15 , pp. 413-417
    • Nyström, M.1    Folke, C.2    Moberg, F.3
  • 85
    • 78649978358 scopus 로고    scopus 로고
    • Evolutionary relationships of wild hominids recapitulated by gut microbial communities
    • Ochman, H., Worobey, M., Kuo, C.-H., Ndjango, J.-B. N., Peeters, M., Hahn, B. H., et al. (2010). Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biol. 8:e1000546. doi: 10.1371/journal.pbio.1000546
    • (2010) PLoS Biol , vol.8
    • Ochman, H.1    Worobey, M.2    Kuo, C.-H.3    Ndjango, J.-B.N.4    Peeters, M.5    Hahn, B.H.6
  • 86
    • 84964383626 scopus 로고    scopus 로고
    • "Caesarean sections, "
    • (Accessed September 9, 2014)
    • OECD. (2013). "Caesarean sections, " in Health at a Glance (Organisation for Economic Co-operation and Development), 98-99. Available online at: http://www.oecd-ilibrary.org/content/chapter/health_glance-2013-39-en (Accessed September 9, 2014).
    • (2013) Health at a Glance (Organisation for Economic Co-operation and Development) , pp. 98-99
  • 87
    • 84909641363 scopus 로고    scopus 로고
    • Intestinal microbiota, probiotics and prebiotics in inflammatory bowel disease
    • Orel, R. (2014). Intestinal microbiota, probiotics and prebiotics in inflammatory bowel disease. World J. Gastroenterol. 20:11505. doi: 10.3748/wjg.v20.i33.11505
    • (2014) World J. Gastroenterol , vol.20 , pp. 11505
    • Orel, R.1
  • 88
    • 0002596015 scopus 로고
    • Food web complexity and species diversity
    • Paine, R. (1966). Food web complexity and species diversity. Am. Nat. 100, 65-75. doi: 10.1086/282400
    • (1966) Am. Nat , vol.100 , pp. 65-75
    • Paine, R.1
  • 89
    • 84894268743 scopus 로고    scopus 로고
    • Differential effects of antibiotic therapy on the structure and function of human gut microbiota
    • Pérez-Cobas, A. E., Artacho, A., Knecht, H., Ferrús, M. L., Friedrichs, A., Ott, S. J., et al. (2013). Differential effects of antibiotic therapy on the structure and function of human gut microbiota. PLoS ONE 8:e80201. doi: 10.1371/journal.pone.0080201
    • (2013) PLoS ONE , vol.8
    • Pérez-Cobas, A.E.1    Artacho, A.2    Knecht, H.3    Ferrús, M.L.4    Friedrichs, A.5    Ott, S.J.6
  • 90
    • 84902660778 scopus 로고    scopus 로고
    • Defining dysbiosis and its influence on host immunity and disease: how changes in microbiota structure influence health
    • Petersen, C., and Round, J. L. (2014). Defining dysbiosis and its influence on host immunity and disease: how changes in microbiota structure influence health. Cell. Microbiol. 16, 1024-1033. doi: 10.1111/cmi.12308
    • (2014) Cell. Microbiol , vol.16 , pp. 1024-1033
    • Petersen, C.1    Round, J.L.2
  • 92
    • 77649275204 scopus 로고    scopus 로고
    • Prebiotics and probiotics; modifying and mining the microbiota
    • Quigley, E. M. M. (2010). Prebiotics and probiotics; modifying and mining the microbiota. Pharmacol. Res. 61, 213-218. doi: 10.1016/j.phrs.2010.01.004
    • (2010) Pharmacol. Res , vol.61 , pp. 213-218
    • Quigley, E.M.M.1
  • 93
    • 77954627922 scopus 로고    scopus 로고
    • Viruses in the faecal microbiota of monozygotic twins and their mothers
    • Reyes, A., Haynes, M., Hanson, N., Angly, F. E., Heath, A. C., Rohwer, F., et al. (2010). Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature 466, 334-338. doi: 10.1038/nature09199
    • (2010) Nature , vol.466 , pp. 334-338
    • Reyes, A.1    Haynes, M.2    Hanson, N.3    Angly, F.E.4    Heath, A.C.5    Rohwer, F.6
  • 94
    • 84890281518 scopus 로고    scopus 로고
    • Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut
    • Reyes, A., Wu, M., McNulty, N. P., Rohwer, F. L., and Gordon, J. I. (2013). Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut. Proc. Natl. Acad. Sci.U.S.A. 110, 20236-20241. doi: 10.1073/pnas.1319470110
    • (2013) Proc. Natl. Acad. Sci.U.S.A , vol.110 , pp. 20236-20241
    • Reyes, A.1    Wu, M.2    McNulty, N.P.3    Rohwer, F.L.4    Gordon, J.I.5
  • 97
    • 0242417580 scopus 로고    scopus 로고
    • Impact of protozoan grazing on bacterial community structure in soil microcosms
    • Ronn, R., McCaig, A. E., Griffiths, B. S., and Prosser, J. I. (2002). Impact of protozoan grazing on bacterial community structure in soil microcosms. Appl. Environ. Microbiol. 68, 6094-6105. doi: 10.1128/AEM.68.12.6094-6105.2002
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 6094-6105
    • Ronn, R.1    McCaig, A.E.2    Griffiths, B.S.3    Prosser, J.I.4
  • 98
    • 84860436361 scopus 로고    scopus 로고
    • Early life antibiotic-driven changes in microbiota enhance susceptibility to allergic asthma
    • Russell, S. L., Gold, M. J., Hartmann, M., Willing, B. P., Thorson, L., Wlodarska, M., et al. (2012). Early life antibiotic-driven changes in microbiota enhance susceptibility to allergic asthma. EMBO Rep. 13, 440-447. doi: 10.1038/embor.2012.32
    • (2012) EMBO Rep , vol.13 , pp. 440-447
    • Russell, S.L.1    Gold, M.J.2    Hartmann, M.3    Willing, B.P.4    Thorson, L.5    Wlodarska, M.6
  • 99
    • 33747876745 scopus 로고    scopus 로고
    • A global perspective on the use, sales, exposure pathways, occurrence, fate and effects of veterinary antibiotics (VAs) in the environment
    • Sarmah, A. K., Meyer, M. T., and Boxall, A. B. A. (2006). A global perspective on the use, sales, exposure pathways, occurrence, fate and effects of veterinary antibiotics (VAs) in the environment. Chemosphere 65, 725-759. doi: 10.1016/j.chemosphere.2006.03.026
    • (2006) Chemosphere , vol.65 , pp. 725-759
    • Sarmah, A.K.1    Meyer, M.T.2    Boxall, A.B.A.3
  • 100
    • 84958831500 scopus 로고    scopus 로고
    • Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence
    • Schaubeck, M., Clavel, T., Calasan, J., Lagkouvardos, I., Haange, S. B., Jehmlich, N., et al. (2015). Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence. Gut 65, 225-237. doi: 10.1136/gutjnl-2015-309333
    • (2015) Gut , vol.65 , pp. 225-237
    • Schaubeck, M.1    Clavel, T.2    Calasan, J.3    Lagkouvardos, I.4    Haange, S.B.5    Jehmlich, N.6
  • 101
    • 77953596009 scopus 로고    scopus 로고
    • A distinctive "microbial signature" in celiac pediatric patients
    • Schippa, S., Iebba, V., Barbato, M., Di Nardo, G., Totino, V., Checchi, M. P., et al. (2010). A distinctive "microbial signature" in celiac pediatric patients. BMC Microbiol. 10:175. doi: 10.1186/1471-2180-10-175
    • (2010) BMC Microbiol , vol.10 , pp. 175
    • Schippa, S.1    Iebba, V.2    Barbato, M.3    Di Nardo, G.4    Totino, V.5    Checchi, M.P.6
  • 104
    • 84898906169 scopus 로고    scopus 로고
    • Systematic review: faecal microbiota transplantation therapy for digestive and nondigestive disorders in adults and children
    • Sha, S., Liang, J., Chen, M., Xu, B., Liang, C., Wei, N., et al. (2014). Systematic review: faecal microbiota transplantation therapy for digestive and nondigestive disorders in adults and children. Aliment. Pharmacol. Ther. 39, 1003-1032. doi: 10.1111/apt.12699
    • (2014) Aliment. Pharmacol. Ther , vol.39 , pp. 1003-1032
    • Sha, S.1    Liang, J.2    Chen, M.3    Xu, B.4    Liang, C.5    Wei, N.6
  • 105
    • 84873717548 scopus 로고    scopus 로고
    • The biodiversity and composition of the dominant fecal microbiota in patients with inflammatory bowel disease
    • Sha, S., Xu, B., Wang, X., Zhang, Y., Wang, H., Kong, X., et al. (2013). The biodiversity and composition of the dominant fecal microbiota in patients with inflammatory bowel disease. Diagn. Microbiol. Infect. Dis. 75, 245-251. doi: 10.1016/j.diagmicrobio.2012.11.022
    • (2013) Diagn. Microbiol. Infect. Dis , vol.75 , pp. 245-251
    • Sha, S.1    Xu, B.2    Wang, X.3    Zhang, Y.4    Wang, H.5    Kong, X.6
  • 106
  • 107
    • 84879151793 scopus 로고    scopus 로고
    • An eye to a kill: using predatory bacteria to control gram-negative pathogens associated with ocular infections
    • Shanks, R. M. Q., Davra, V. R., Romanowski, E. G., Brothers, K. M., Stella, N. A., Godboley, D., et al. (2013). An eye to a kill: using predatory bacteria to control gram-negative pathogens associated with ocular infections. PLoS ONE 8:e66723. doi: 10.1371/journal.pone.0066723
    • (2013) PLoS ONE , vol.8
    • Shanks, R.M.Q.1    Davra, V.R.2    Romanowski, E.G.3    Brothers, K.M.4    Stella, N.A.5    Godboley, D.6
  • 108
    • 78649868190 scopus 로고    scopus 로고
    • Association between the use of antibiotics in the first year of life and pediatric inflammatory bowel disease
    • Shaw, S. Y., Blanchard, J. F., and Bernstein, C. N. (2010). Association between the use of antibiotics in the first year of life and pediatric inflammatory bowel disease. Am. J. Gastroenterol. 105, 2687-2692. doi: 10.1038/ajg.2010.398
    • (2010) Am. J. Gastroenterol , vol.105 , pp. 2687-2692
    • Shaw, S.Y.1    Blanchard, J.F.2    Bernstein, C.N.3
  • 109
    • 84931575689 scopus 로고    scopus 로고
    • Review article: dietary fibre-microbiota interactions
    • Simpson, H. L., and Campbell, B. J. (2015). Review article: dietary fibre-microbiota interactions. Aliment. Pharmacol. Ther. 42, 158-179. doi: 10.1111/apt.13248
    • (2015) Aliment. Pharmacol. Ther , vol.42 , pp. 158-179
    • Simpson, H.L.1    Campbell, B.J.2
  • 110
    • 4344595067 scopus 로고    scopus 로고
    • Bdellovibrio as therapeutic agents: a predatory renaissance?
    • Sockett, R. E., and Lambert, C. (2004). Bdellovibrio as therapeutic agents: a predatory renaissance? Nat. Rev. Microbiol. 2, 669-675. doi: 10.1038/nrmicro959
    • (2004) Nat. Rev. Microbiol , vol.2 , pp. 669-675
    • Sockett, R.E.1    Lambert, C.2
  • 111
    • 84892708007 scopus 로고    scopus 로고
    • Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota
    • Stein, R. R., Bucci, V., Toussaint, N. C., Buffie, C. G., Rätsch, G., Pamer, E. G., et al. (2013). Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota. PLoS Comput. Biol. 9:e1003388. doi: 10.1371/journal.pcbi.1003388
    • (2013) PLoS Comput. Biol , vol.9
    • Stein, R.R.1    Bucci, V.2    Toussaint, N.C.3    Buffie, C.G.4    Rätsch, G.5    Pamer, E.G.6
  • 112
    • 84883362657 scopus 로고    scopus 로고
    • Development of the preterm gut microbiome in twins at risk of necrotising enterocolitis and sepsis
    • Stewart, C. J., Marrs, E. C. L., Nelson, A., Lanyon, C., Perry, J. D., Embleton, N. D., et al. (2013). Development of the preterm gut microbiome in twins at risk of necrotising enterocolitis and sepsis. PLoS ONE 8:e73465. doi: 10.1371/journal.pone.0073465
    • (2013) PLoS ONE , vol.8
    • Stewart, C.J.1    Marrs, E.C.L.2    Nelson, A.3    Lanyon, C.4    Perry, J.D.5    Embleton, N.D.6
  • 113
    • 0001353754 scopus 로고
    • Bdellovibrio bacteriovorus gen. et sp. n., a predatory, ectoparasitic, and bacteriolytic microorganism
    • Stolp, H., and Starr, M. P. (1963). Bdellovibrio bacteriovorus gen. et sp. n., a predatory, ectoparasitic, and bacteriolytic microorganism. Antonie Van Leeuwenhoek 29, 217-248. doi: 10.1007/BF02046064
    • (1963) Antonie Van Leeuwenhoek , vol.29 , pp. 217-248
    • Stolp, H.1    Starr, M.P.2
  • 114
    • 34248647284 scopus 로고    scopus 로고
    • Predatory mechanisms of Bdellovibrio and like organisms
    • Strauch, E., Schwudke, D., and Linscheid, M. (2007). Predatory mechanisms of Bdellovibrio and like organisms. Future Microbiol. 2, 63-73. doi: 10.2217/17460913.2.1.63
    • (2007) Future Microbiol , vol.2 , pp. 63-73
    • Strauch, E.1    Schwudke, D.2    Linscheid, M.3
  • 115
    • 0032755259 scopus 로고    scopus 로고
    • Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
    • Suau, A., Bonnet, R., Sutren, M., Godon, J.-J., Gibson, G. R., Collins, M. D., et al. (1999). Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl. Environ. Microbiol. 65, 4799-4807.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 4799-4807
    • Suau, A.1    Bonnet, R.2    Sutren, M.3    Godon, J.-J.4    Gibson, G.R.5    Collins, M.D.6
  • 116
    • 84879151228 scopus 로고    scopus 로고
    • Regional ecological variability and impact of the maritime fur trade on nearshore ecosystems in southern Haida Gwaii (British Columbia, Canada): evidence from stable isotope analysis of rockfish (Sebastes spp.) bone collagen
    • Szpak, P., Orchard, T. J., Salomon, A. K., and Gröcke, D. R. (2013). Regional ecological variability and impact of the maritime fur trade on nearshore ecosystems in southern Haida Gwaii (British Columbia, Canada): evidence from stable isotope analysis of rockfish (Sebastes spp.) bone collagen. Archaeol. Anthropol. Sci. 5, 159-182. doi: 10.1007/s12520-013-0122-y
    • (2013) Archaeol. Anthropol. Sci , vol.5 , pp. 159-182
    • Szpak, P.1    Orchard, T.J.2    Salomon, A.K.3    Gröcke, D.R.4
  • 117
    • 84875233230 scopus 로고    scopus 로고
    • The role of gut microbiota in human obesity: recent findings and future perspectives
    • Tagliabue, A., and Elli, M. (2013). The role of gut microbiota in human obesity: recent findings and future perspectives. Nutr. Metab. Cardiovasc. Dis. 23, 160-168. doi: 10.1016/j.numecd.2012.09.002
    • (2013) Nutr. Metab. Cardiovasc. Dis , vol.23 , pp. 160-168
    • Tagliabue, A.1    Elli, M.2
  • 118
    • 84908302963 scopus 로고    scopus 로고
    • Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis
    • Thaiss, C. A., Zeevi, D., Levy, M., Zilberman-Schapira, G., Suez, J., Tengeler, A. C., et al. (2014). Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis. Cell 159, 514-529. doi: 10.1016/j.cell.2014.09.048
    • (2014) Cell , vol.159 , pp. 514-529
    • Thaiss, C.A.1    Zeevi, D.2    Levy, M.3    Zilberman-Schapira, G.4    Suez, J.5    Tengeler, A.C.6
  • 120
    • 84909958892 scopus 로고    scopus 로고
    • Antibiotics associated with increased risk of new-onset crohn's disease but not ulcerative colitis: a meta-analysis
    • Ungaro, R., Bernstein, C. N., Gearry, R., Hviid, A., Kolho, K.-L., Kronman, M. P., et al. (2014). Antibiotics associated with increased risk of new-onset crohn's disease but not ulcerative colitis: a meta-analysis. Am. J. Gastroenterol. 109, 1728-1738. doi: 10.1038/ajg.2014.246 (Accessed November 6, 2014).
    • (2014) Am. J. Gastroenterol , vol.109 , pp. 1728-1738
    • Ungaro, R.1    Bernstein, C.N.2    Gearry, R.3    Hviid, A.4    Kolho, K.-L.5    Kronman, M.P.6
  • 121
    • 78651088267 scopus 로고    scopus 로고
    • Killing of anaerobic pathogens by predatory bacteria: bacterial predation on anaerobic pathogens
    • Van Essche, M., Quirynen, M., Sliepen, I., Loozen, G., Boon, N., Van Eldere, J., et al. (2011). Killing of anaerobic pathogens by predatory bacteria: bacterial predation on anaerobic pathogens. Mol. Oral Microbiol. 26, 52-61. doi: 10.1111/j.2041-1014.2010.00595.x
    • (2011) Mol. Oral Microbiol , vol.26 , pp. 52-61
    • Van Essche, M.1    Quirynen, M.2    Sliepen, I.3    Loozen, G.4    Boon, N.5    Van Eldere, J.6
  • 122
    • 77952803493 scopus 로고    scopus 로고
    • Conceptual synthesis in community ecology
    • Vellend, M. (2010). Conceptual synthesis in community ecology. Q. Rev. Biol. 85, 183-206. doi: 10.1086/652373
    • (2010) Q. Rev. Biol , vol.85 , pp. 183-206
    • Vellend, M.1
  • 123
    • 84879097268 scopus 로고    scopus 로고
    • Fecal transplant: a safe and sustainable clinical therapy for restoring intestinal microbial balance in human disease?
    • Vrieze, A., de Groot, P. F., Kootte, R. S., Knaapen, M., van Nood, E., and Nieuwdorp, M. (2013). Fecal transplant: a safe and sustainable clinical therapy for restoring intestinal microbial balance in human disease? Best Pract. Res. Clin. Gastroenterol. 27, 127-137. doi: 10.1016/j.bpg.2013.03.003
    • (2013) Best Pract. Res. Clin. Gastroenterol , vol.27 , pp. 127-137
    • Vrieze, A.1    de Groot, P.F.2    Kootte, R.S.3    Knaapen, M.4    van Nood, E.5    Nieuwdorp, M.6
  • 124
    • 84866738529 scopus 로고    scopus 로고
    • Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome
    • 913-916.e7
    • Vrieze, A., Van Nood, E., Holleman, F., Salojärvi, J., Kootte, R. S., Bartelsman, J. F. W. M., et al. (2012). Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome. Gastroenterology 143, 913-916.e7. doi: 10.1053/j.gastro.2012.06.031
    • (2012) Gastroenterology , vol.143
    • Vrieze, A.1    Van Nood, E.2    Holleman, F.3    Salojärvi, J.4    Kootte, R.S.5    Bartelsman, J.F.W.M.6
  • 125
    • 38149069478 scopus 로고    scopus 로고
    • Reduced diversity in the early fecal microbiota of infants with atopic eczema
    • Wang, M., Karlsson, C., Olsson, C., Adlerberth, I., Wold, A. E., Strachan, D. P., et al. (2008). Reduced diversity in the early fecal microbiota of infants with atopic eczema. J. Allergy Clin. Immunol. 121, 129-134. doi: 10.1016/j.jaci.2007.09.011
    • (2008) J. Allergy Clin. Immunol , vol.121 , pp. 129-134
    • Wang, M.1    Karlsson, C.2    Olsson, C.3    Adlerberth, I.4    Wold, A.E.5    Strachan, D.P.6
  • 126
    • 76649111757 scopus 로고    scopus 로고
    • Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis
    • Wier, A. M., Nyholm, S. V., Mandel, M. J., Massengo-Tiassé, R. P., Schaefer, A. L., Koroleva, I., et al. (2010). Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis. Proc. Natl. Acad. Sci. U.S.A. 107, 2259-2264. doi: 10.1073/pnas.0909712107
    • (2010) Proc. Natl. Acad. Sci. U.S.A , vol.107 , pp. 2259-2264
    • Wier, A.M.1    Nyholm, S.V.2    Mandel, M.J.3    Massengo-Tiassé, R.P.4    Schaefer, A.L.5    Koroleva, I.6
  • 127
    • 84955613013 scopus 로고    scopus 로고
    • Comparative metabolomics in vegans and omnivores reveal constraints on diet-dependent gut microbiota metabolite production
    • Wu, G. D., Compher, C., Chen, E. Z., Smith, S. A., Shah, R. D., Bittinger, K., et al. (2016). Comparative metabolomics in vegans and omnivores reveal constraints on diet-dependent gut microbiota metabolite production. Gut 65, 63-72. doi: 10.1136/gutjnl-2014-308209
    • (2016) Gut , vol.65 , pp. 63-72
    • Wu, G.D.1    Compher, C.2    Chen, E.Z.3    Smith, S.A.4    Shah, R.D.5    Bittinger, K.6
  • 129
    • 84897834610 scopus 로고    scopus 로고
    • Life at the beginning: perturbation of the microbiota by antibiotics in early life and its role in health and disease
    • Zeissig, S., and Blumberg, R. S. (2014). Life at the beginning: perturbation of the microbiota by antibiotics in early life and its role in health and disease. Nat. Immunol. 15, 307-310. doi: 10.1038/ni.2847
    • (2014) Nat. Immunol , vol.15 , pp. 307-310
    • Zeissig, S.1    Blumberg, R.S.2
  • 130
    • 84929440325 scopus 로고    scopus 로고
    • Metabolic dependencies drive species co-occurrence in diverse microbial communities
    • Zelezniak, A., Andrejev, S., Ponomarova, O., Mende, D. R., Bork, P., and Patil, K. R. (2015). Metabolic dependencies drive species co-occurrence in diverse microbial communities. Proc. Natl. Acad. Sci. U.S.A. 112, 6449-6454. doi: 10.1073/pnas.1421834112
    • (2015) Proc. Natl. Acad. Sci. U.S.A , vol.112 , pp. 6449-6454
    • Zelezniak, A.1    Andrejev, S.2    Ponomarova, O.3    Mende, D.R.4    Bork, P.5    Patil, K.R.6
  • 131
    • 84896368054 scopus 로고    scopus 로고
    • Modeling the impact of antibiotic exposure on human microbiota
    • Zhao, J., Murray, S., and LiPuma, J. J. (2014). Modeling the impact of antibiotic exposure on human microbiota. Sci. Rep. 4:4345. doi: 10.1038/srep04345
    • (2014) Sci. Rep , vol.4 , pp. 4345
    • Zhao, J.1    Murray, S.2    LiPuma, J.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.