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Volumn 48, Issue 11, 2016, Pages 1413-1417

Association of host genome with intestinal microbial composition in a large healthy cohort

Author keywords

[No Author keywords available]

Indexed keywords

ADOLESCENT; ADULT; ARTICLE; BACTERIAL GENETICS; CHILD; COHORT ANALYSIS; CONTROLLED STUDY; EUBACTERIUM; FAECALIBACTERIUM; FEMALE; GENE LOCUS; GENE REPLICATION; GENETIC ASSOCIATION; GENETIC IDENTIFICATION; GENETIC VARIABILITY; GENETIC VARIATION; HUMAN; INTESTINE FLORA; LACHNOSPIRACEAE; MALE; MICROBIAL GENOME; NONHUMAN; NORMAL HUMAN; POPULATION ABUNDANCE; PRIORITY JOURNAL; RIKENELLACEAE; SINGLE NUCLEOTIDE POLYMORPHISM; BACTERIUM; CLASSIFICATION; GENOTYPE; HUMAN GENOME; YOUNG ADULT;

EID: 84989943149     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.3693     Document Type: Article
Times cited : (353)

References (43)
  • 1
    • 84862173705 scopus 로고    scopus 로고
    • A core human microbiome as viewed through 16S rRNA sequence clusters
    • Huse, S.M., Ye, Y., Zhou, Y. & Fodor, A.A. A core human microbiome as viewed through 16S rRNA sequence clusters. PLoS One 7, e34242 (2012).
    • (2012) PLoS One , vol.7 , pp. e34242
    • Huse, S.M.1    Ye, Y.2    Zhou, Y.3    Fodor, A.A.4
  • 2
    • 84871732071 scopus 로고    scopus 로고
    • Genomic variation landscape of the human gut microbiome
    • Schloissnig, S. et al. Genomic variation landscape of the human gut microbiome. Nature 493, 45-50 (2013).
    • (2013) Nature , vol.493 , pp. 45-50
    • Schloissnig, S.1
  • 3
    • 84868336049 scopus 로고    scopus 로고
    • Host-microbe interactions have shaped the genetic architecture of infammatory bowel disease
    • Jostins, L. et al. Host-microbe interactions have shaped the genetic architecture of infammatory bowel disease. Nature 491, 119-124 (2012).
    • (2012) Nature , vol.491 , pp. 119-124
    • Jostins, L.1
  • 4
    • 84891790401 scopus 로고    scopus 로고
    • The NHGRI GWAS Catalog, a curated resource of SNP-trait associations
    • Welter, D. et al. The NHGRI GWAS Catalog, a curated resource of SNP-trait associations. Nucleic Acids Res. 42, D1001-D1006 (2014).
    • (2014) Nucleic Acids Res. , vol.42 , pp. D1001-D1006
    • Welter, D.1
  • 5
    • 43249090541 scopus 로고    scopus 로고
    • A multiple testing correction method for genetic association studies using correlated single nucleotide polymorphisms
    • Gao, X., Starmer, J. & Martin, E.R. A multiple testing correction method for genetic association studies using correlated single nucleotide polymorphisms. Genet. Epidemiol. 32, 361-369 (2008).
    • (2008) Genet. Epidemiol. , vol.32 , pp. 361-369
    • Gao, X.1    Starmer, J.2    Martin, E.R.3
  • 7
    • 84910096224 scopus 로고    scopus 로고
    • Human genetics shape the gut microbiome
    • Goodrich, J.K. et al. Human genetics shape the gut microbiome. Cell 159, 789-799 (2014).
    • (2014) Cell , vol.159 , pp. 789-799
    • Goodrich, J.K.1
  • 8
    • 84867074831 scopus 로고    scopus 로고
    • A metagenome-wide association study of gut microbiota in type 2 diabetes
    • Qin, J. et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490, 55-60 (2012).
    • (2012) Nature , vol.490 , pp. 55-60
    • Qin, J.1
  • 9
    • 84878709716 scopus 로고    scopus 로고
    • Gut metagenome in European women with normal, impaired and diabetic glucose control
    • Karlsson, F.H. et al. Gut metagenome in European women with normal, impaired and diabetic glucose control. Nature 498, 99-103 (2013).
    • (2013) Nature , vol.498 , pp. 99-103
    • Karlsson, F.H.1
  • 10
    • 84950978760 scopus 로고    scopus 로고
    • Genome-wide association studies of the human gut microbiota
    • Davenport, E.R. et al. Genome-wide association studies of the human gut microbiota. PLoS One 10, e0140301 (2015).
    • (2015) PLoS One , vol.10 , pp. e0140301
    • Davenport, E.R.1
  • 11
    • 84896092821 scopus 로고    scopus 로고
    • The treatment-naive microbiome in new-onset Crohn's disease
    • Gevers, D. et al. The treatment-naive microbiome in new-onset Crohn's disease. Cell Host Microbe 15, 382-392 (2014).
    • (2014) Cell Host Microbe , vol.15 , pp. 382-392
    • Gevers, D.1
  • 12
    • 85015683534 scopus 로고    scopus 로고
    • IBD genetic risk profle in healthy frst-degree relatives of Crohn's disease patients
    • Kevans, D. et al. IBD genetic risk profle in healthy frst-degree relatives of Crohn's disease patients. J. Crohn's Colitis 10, 209-215 (2016).
    • (2016) J. Crohn's Colitis , vol.10 , pp. 209-215
    • Kevans, D.1
  • 13
    • 34249997024 scopus 로고    scopus 로고
    • Replicating genotype-phenotype associations
    • Chanock, S.J. et al. Replicating genotype-phenotype associations. Nature 447, 655-660 (2007).
    • (2007) Nature , vol.447 , pp. 655-660
    • Chanock, S.J.1
  • 14
    • 84948992933 scopus 로고    scopus 로고
    • Gut microbiota and aging
    • O'Toole, P.W. & Jeffery, I.B. Gut microbiota and aging. Science 350, 1214-1215 (2015).
    • (2015) Science , vol.350 , pp. 1214-1215
    • O'Toole, P.W.1    Jeffery, I.B.2
  • 15
    • 80053344020 scopus 로고    scopus 로고
    • Complete genome sequence of Acidaminococcus fermentans type strain (VR4)
    • Chang, Y.J. et al. Complete genome sequence of Acidaminococcus fermentans type strain (VR4). Stand. Genomic Sci. 3, 1-14 (2010).
    • (2010) Stand. Genomic Sci. , vol.3 , pp. 1-14
    • Chang, Y.J.1
  • 16
    • 84878682420 scopus 로고    scopus 로고
    • The Genotype-Tissue Expression (GTEx) Project
    • GTEx Consortium. The Genotype-Tissue Expression (GTEx) Project. Nat. Genet. 45, 580-585 (2013).
    • (2013) Nat. Genet. , vol.45 , pp. 580-585
  • 17
    • 84870502629 scopus 로고    scopus 로고
    • Bayesian refnement of association signals for 14 loci in 3 common diseases
    • Maller, J.B. et al. Bayesian refnement of association signals for 14 loci in 3 common diseases. Nat. Genet. 44, 1294-1301 (2012).
    • (2012) Nat. Genet. , vol.44 , pp. 1294-1301
    • Maller, J.B.1
  • 18
    • 84872084658 scopus 로고    scopus 로고
    • Sjogren syndrome antigen B (SSB)/La promotes global microRNA expression by binding microRNA precursors through stem-loop recognition
    • Liang, C. et al. Sjogren syndrome antigen B (SSB)/La promotes global microRNA expression by binding microRNA precursors through stem-loop recognition. J. Biol. Chem. 288, 723-736 (2013).
    • (2013) J. Biol. Chem. , vol.288 , pp. 723-736
    • Liang, C.1
  • 19
    • 84655176306 scopus 로고    scopus 로고
    • The role of ubiquitylation in immune defence and pathogen evasion
    • Jiang, X. & Chen, Z.J. The role of ubiquitylation in immune defence and pathogen evasion. Nat. Rev. Immunol. 12, 35-48 (2011).
    • (2011) Nat. Rev. Immunol. , vol.12 , pp. 35-48
    • Jiang, X.1    Chen, Z.J.2
  • 20
    • 84901193479 scopus 로고    scopus 로고
    • Exploitation of the host ubiquitin system by human bacterial pathogens
    • Ashida, H., Kim, M. & Sasakawa, C. Exploitation of the host ubiquitin system by human bacterial pathogens. Nat. Rev. Microbiol. 12, 399-413 (2014).
    • (2014) Nat. Rev. Microbiol. , vol.12 , pp. 399-413
    • Ashida, H.1    Kim, M.2    Sasakawa, C.3
  • 21
    • 55949124035 scopus 로고    scopus 로고
    • Faecalibacterium prausnitzii is an anti-infammatory commensal bacterium identifed by gut microbiota analysis of Crohn disease patients
    • Sokol, H. et al. Faecalibacterium prausnitzii is an anti-infammatory commensal bacterium identifed by gut microbiota analysis of Crohn disease patients. Proc. Natl. Acad. Sci. USA 105, 16731-16736 (2008).
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 16731-16736
    • Sokol, H.1
  • 23
    • 58749112734 scopus 로고    scopus 로고
    • A core gut microbiome in obese and lean twins
    • Turnbaugh, P.J. et al. A core gut microbiome in obese and lean twins. Nature 457, 480-484 (2009).
    • (2009) Nature , vol.457 , pp. 480-484
    • Turnbaugh, P.J.1
  • 24
    • 79952748287 scopus 로고    scopus 로고
    • Unravelling the effects of the environment and host genotype on the gut microbiome
    • Spor, A., Koren, O. & Ley, R. Unravelling the effects of the environment and host genotype on the gut microbiome. Nat. Rev. Microbiol. 9, 279-290 (2011).
    • (2011) Nat. Rev. Microbiol. , vol.9 , pp. 279-290
    • Spor, A.1    Koren, O.2    Ley, R.3
  • 25
    • 0038724272 scopus 로고    scopus 로고
    • Subclinical intestinal infammation: An inherited abnormality in Crohn's disease relatives?
    • Thjodleifsson, B. et al. Subclinical intestinal infammation: an inherited abnormality in Crohn's disease relatives? Gastroenterology 124, 1728-1737 (2003).
    • (2003) Gastroenterology , vol.124 , pp. 1728-1737
    • Thjodleifsson, B.1
  • 26
    • 84862286169 scopus 로고    scopus 로고
    • A framework for human microbiome research
    • Human Microbiome Project Consortium. A framework for human microbiome research. Nature 486, 215-221 (2012).
    • (2012) Nature , vol.486 , pp. 215-221
  • 27
    • 84863981120 scopus 로고    scopus 로고
    • Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
    • Caporaso, J.G. et al. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 6, 1621-1624 (2012).
    • (2012) ISME J. , vol.6 , pp. 1621-1624
    • Caporaso, J.G.1
  • 29
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso, J.G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1
  • 30
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar, R.C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-2461 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 31
    • 33746061683 scopus 로고    scopus 로고
    • Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
    • DeSantis, T.Z. et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72, 5069-5072 (2006).
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 5069-5072
    • DeSantis, T.Z.1
  • 32
    • 84884127512 scopus 로고    scopus 로고
    • Predictive functional profling of microbial communities using 16S rRNA marker gene sequences
    • Langille, M.G. et al. Predictive functional profling of microbial communities using 16S rRNA marker gene sequences. Nat. Biotechnol. 31, 814-821 (2013).
    • (2013) Nat. Biotechnol. , vol.31 , pp. 814-821
    • Langille, M.G.1
  • 33
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of Phylogenetics and Evolution in R language
    • Paradis, E., Claude, J. & Strimmer, K. APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics 20, 289-290 (2004).
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 34
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov, R.L., Koonin, E.V. & Lipman, D.J. A genomic perspective on protein families. Science 278, 631-637 (1997).
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 35
    • 30744434862 scopus 로고    scopus 로고
    • Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix
    • Li, J. & Ji, L. Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix. Heredity (Edinb.) 95, 221-227 (2005).
    • (2005) Heredity (Edinb.) , vol.95 , pp. 221-227
    • Li, J.1    Ji, L.2
  • 36
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: A tool set for whole-genome association and population-based linkage analyses
    • Purcell, S. et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 81, 559-575 (2007).
    • (2007) Am. J. Hum. Genet. , vol.81 , pp. 559-575
    • Purcell, S.1
  • 37
    • 67651222400 scopus 로고    scopus 로고
    • A fexible and accurate genotype imputation method for the next generation of genome-wide association studies
    • Howie, B.N., Donnelly, P. & Marchini, J. A fexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet. 5, e1000529 (2009).
    • (2009) PLoS Genet. , vol.5 , pp. e1000529
    • Howie, B.N.1    Donnelly, P.2    Marchini, J.3
  • 38
    • 84863845193 scopus 로고    scopus 로고
    • Genotype imputation with thousands of genomes
    • Howie, B., Marchini, J. & Stephens, M. Genotype imputation with thousands of genomes. G3 (Bethesda) 1, 457-470 (2011).
    • (2011) G3 (Bethesda) , vol.1 , pp. 457-470
    • Howie, B.1    Marchini, J.2    Stephens, M.3
  • 39
    • 84878802935 scopus 로고    scopus 로고
    • Imputing amino acid polymorphisms in human leukocyte antigens
    • Jia, X. et al. Imputing amino acid polymorphisms in human leukocyte antigens. PLoS One 8, e64683 (2013).
    • (2013) PLoS One , vol.8 , pp. e64683
    • Jia, X.1
  • 40
    • 0031966959 scopus 로고    scopus 로고
    • Multipoint quantitative-trait linkage analysis in general pedigrees
    • Almasy, L. & Blangero, J. Multipoint quantitative-trait linkage analysis in general pedigrees. Am. J. Hum. Genet. 62, 1198-1211 (1998).
    • (1998) Am. J. Hum. Genet. , vol.62 , pp. 1198-1211
    • Almasy, L.1    Blangero, J.2
  • 41
    • 77649173768 scopus 로고
    • Longitudinal data analysis using generalized linear models
    • Liang, K.-Y. & Zeger, S.L. Longitudinal data analysis using generalized linear models. Biometrika 73, 13-22 (1986).
    • (1986) Biometrika , vol.73 , pp. 13-22
    • Liang, K.-Y.1    Zeger, S.L.2
  • 42
    • 0035102570 scopus 로고    scopus 로고
    • Akaike's information criterion in generalized estimating equations
    • Pan, W. Akaike's information criterion in generalized estimating equations. Biometrics 57, 120-125 (2001).
    • (2001) Biometrics , vol.57 , pp. 120-125
    • Pan, W.1
  • 43
    • 84901631426 scopus 로고    scopus 로고
    • Bayesian test for colocalisation between pairs of genetic association studies using summary statistics
    • Giambartolomei, C. et al. Bayesian test for colocalisation between pairs of genetic association studies using summary statistics. PLoS Genet. 10, e1004383 (2014).
    • (2014) PLoS Genet. , vol.10 , pp. e1004383
    • Giambartolomei, C.1


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