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Volumn 19, Issue 5, 2016, Pages 731-743

Genetic Determinants of the Gut Microbiome in UK Twins

Author keywords

[No Author keywords available]

Indexed keywords

FORMIC ACID; LACTASE; RNA 16S;

EID: 84969492201     PISSN: 19313128     EISSN: 19346069     Source Type: Journal    
DOI: 10.1016/j.chom.2016.04.017     Document Type: Article
Times cited : (751)

References (81)
  • 1
    • 34547807185 scopus 로고    scopus 로고
    • Siglec-15: An immune system Siglec conserved throughout vertebrate evolution
    • T. Angata, Y. Tabuchi, K. Nakamura, and M. Nakamura Siglec-15: an immune system Siglec conserved throughout vertebrate evolution Glycobiology 17 2007 838 846
    • (2007) Glycobiology , vol.17 , pp. 838-846
    • Angata, T.1    Tabuchi, Y.2    Nakamura, K.3    Nakamura, M.4
  • 3
    • 78449296237 scopus 로고    scopus 로고
    • Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
    • A.K. Benson, S.A. Kelly, R. Legge, F. Ma, S.J. Low, J. Kim, M. Zhang, P.L. Oh, D. Nehrenberg, K. Hua, and et al. Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors Proc. Natl. Acad. Sci. USA 107 2010 18933 18938
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 18933-18938
    • Benson, A.K.1    Kelly, S.A.2    Legge, R.3    Ma, F.4    Low, S.J.5    Kim, J.6    Zhang, M.7    Oh, P.L.8    Nehrenberg, D.9    Hua, K.10
  • 5
    • 0000309175 scopus 로고
    • Diffusion of the interspecies electron carriers H(2) and formate in methanogenic ecosystems and its implications in the measurement of K(m) for H(2) or formate uptake
    • D.R. Boone, R.L. Johnson, and Y. Liu Diffusion of the interspecies electron carriers H(2) and formate in methanogenic ecosystems and its implications in the measurement of K(m) for H(2) or formate uptake Appl. Environ. Microbiol. 55 1989 1735 1741
    • (1989) Appl. Environ. Microbiol. , vol.55 , pp. 1735-1741
    • Boone, D.R.1    Johnson, R.L.2    Liu, Y.3
  • 8
    • 84930426178 scopus 로고    scopus 로고
    • Obesity, starch digestion and amylase: Association between copy number variants at human salivary (AMY1) and pancreatic (AMY2) amylase genes
    • D. Carpenter, S. Dhar, L.M. Mitchell, B. Fu, J. Tyson, N.A.A. Shwan, F. Yang, M.G. Thomas, and J.A.L. Armour Obesity, starch digestion and amylase: association between copy number variants at human salivary (AMY1) and pancreatic (AMY2) amylase genes Hum. Mol. Genet. 24 2015 3472 3480
    • (2015) Hum. Mol. Genet. , vol.24 , pp. 3472-3480
    • Carpenter, D.1    Dhar, S.2    Mitchell, L.M.3    Fu, B.4    Tyson, J.5    Shwan, N.A.A.6    Yang, F.7    Thomas, M.G.8    Armour, J.A.L.9
  • 9
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • H. Consortium Human Microbiome Project Consortium Structure, function and diversity of the healthy human microbiome Nature 486 2012 207 214
    • (2012) Nature , vol.486 , pp. 207-214
    • Consortium, H.1
  • 14
    • 84943151093 scopus 로고    scopus 로고
    • Generalised anxiety disorder - A twin study of genetic architecture, genome-wide association and differential gene expression
    • M.N. Davies, S. Verdi, A. Burri, M. Trzaskowski, M. Lee, J.M. Hettema, R. Jansen, D.I. Boomsma, and T.D. Spector Generalised anxiety disorder - A twin study of genetic architecture, genome-wide association and differential gene expression PLoS ONE 10 2015 e0134865
    • (2015) PLoS ONE , vol.10 , pp. e0134865
    • Davies, M.N.1    Verdi, S.2    Burri, A.3    Trzaskowski, M.4    Lee, M.5    Hettema, J.M.6    Jansen, R.7    Boomsma, D.I.8    Spector, T.D.9
  • 16
    • 5444248493 scopus 로고    scopus 로고
    • Akkermansia muciniphila gen. Nov., sp. Nov., a human intestinal mucin-degrading bacterium
    • M. Derrien, E.E. Vaughan, C.M. Plugge, and W.M. de Vos Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium Int. J. Syst. Evol. Microbiol. 54 2004 1469 1476
    • (2004) Int. J. Syst. Evol. Microbiol. , vol.54 , pp. 1469-1476
    • Derrien, M.1    Vaughan, E.E.2    Plugge, C.M.3    De Vos, W.M.4
  • 20
    • 0018153014 scopus 로고
    • Model-fitting approaches to the analysis of human behaviour
    • L.J. Eaves, K.A. Last, P.A. Young, and N.G. Martin Model-fitting approaches to the analysis of human behaviour Heredity (Edinb) 41 1978 249 320
    • (1978) Heredity (Edinb) , vol.41 , pp. 249-320
    • Eaves, L.J.1    Last, K.A.2    Young, P.A.3    Martin, N.G.4
  • 24
    • 0029769377 scopus 로고    scopus 로고
    • Fecal methanogens and vertebrate evolution
    • J.H.P. Hackstein, and T.A. van Alen Fecal methanogens and vertebrate evolution Evolution 50 1996 559 572
    • (1996) Evolution , vol.50 , pp. 559-572
    • Hackstein, J.H.P.1    Van Alen, T.A.2
  • 29
    • 67651222400 scopus 로고    scopus 로고
    • A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
    • B.N. Howie, P. Donnelly, and J. Marchini A flexible and accurate genotype imputation method for the next generation of genome-wide association studies PLoS Genet. 5 2009 e1000529
    • (2009) PLoS Genet. , vol.5 , pp. e1000529
    • Howie, B.N.1    Donnelly, P.2    Marchini, J.3
  • 30
    • 84996863601 scopus 로고    scopus 로고
    • MicrobiomeGWAS: A tool for identifying host genetic variants associated with microbiome composition
    • X. Hua, L. Song, G. Yu, J.J. Goedert, C.C. Abnet, M.T. Landi, and J. Shi MicrobiomeGWAS: a tool for identifying host genetic variants associated with microbiome composition bioRxiv 2015
    • (2015) BioRxiv
    • Hua, X.1    Song, L.2    Yu, G.3    Goedert, J.J.4    Abnet, C.C.5    Landi, M.T.6    Shi, J.7
  • 34
    • 84865334258 scopus 로고    scopus 로고
    • Associations between polymorphisms in the AHR and CYP1A1-CYP1A2 gene regions and habitual caffeine consumption
    • A.R. Josse, L.A. Da Costa, H. Campos, and A. El-Sohemy Associations between polymorphisms in the AHR and CYP1A1-CYP1A2 gene regions and habitual caffeine consumption Am. J. Clin. Nutr. 96 2012 665 671
    • (2012) Am. J. Clin. Nutr. , vol.96 , pp. 665-671
    • Josse, A.R.1    Da Costa, L.A.2    Campos, H.3    El-Sohemy, A.4
  • 36
    • 84879343905 scopus 로고    scopus 로고
    • Control of pathogens and pathobionts by the gut microbiota
    • N. Kamada, G.Y. Chen, N. Inohara, and G. Núñez Control of pathogens and pathobionts by the gut microbiota Nat. Immunol. 14 2013 685 690
    • (2013) Nat. Immunol. , vol.14 , pp. 685-690
    • Kamada, N.1    Chen, G.Y.2    Inohara, N.3    Núñez, G.4
  • 39
    • 84996479950 scopus 로고    scopus 로고
    • Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice
    • L.J. Leamy, S.A. Kelly, J. Nietfeldt, R.M. Legge, F. Ma, K. Hua, R. Sinha, D.A. Peterson, J. Walter, A.K. Benson, and D. Pomp Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice Genome Biol. 15 2014 552
    • (2014) Genome Biol. , vol.15 , pp. 552
    • Leamy, L.J.1    Kelly, S.A.2    Nietfeldt, J.3    Legge, R.M.4    Ma, F.5    Hua, K.6    Sinha, R.7    Peterson, D.A.8    Walter, J.9    Benson, A.K.10    Pomp, D.11
  • 40
    • 80655149205 scopus 로고    scopus 로고
    • New IBD genetics: Common pathways with other diseases
    • C.W. Lees, J.C. Barrett, M. Parkes, and J. Satsangi New IBD genetics: common pathways with other diseases Gut 60 2011 1739 1753
    • (2011) Gut , vol.60 , pp. 1739-1753
    • Lees, C.W.1    Barrett, J.C.2    Parkes, M.3    Satsangi, J.4
  • 42
    • 33947593397 scopus 로고    scopus 로고
    • Gene-nutrient interactions among determinants of folate and one-carbon metabolism on the risk of non-Hodgkin lymphoma: NCI-SEER case-control study
    • U. Lim, S.S. Wang, P. Hartge, W. Cozen, L.E. Kelemen, S. Chanock, S. Davis, A. Blair, M. Schenk, N. Rothman, and Q. Lan Gene-nutrient interactions among determinants of folate and one-carbon metabolism on the risk of non-Hodgkin lymphoma: NCI-SEER case-control study Blood 109 2007 3050 3059
    • (2007) Blood , vol.109 , pp. 3050-3059
    • Lim, U.1    Wang, S.S.2    Hartge, P.3    Cozen, W.4    Kelemen, L.E.5    Chanock, S.6    Davis, S.7    Blair, A.8    Schenk, M.9    Rothman, N.10    Lan, Q.11
  • 45
    • 84921786419 scopus 로고    scopus 로고
    • Siglec-mediated regulation of immune cell function in disease
    • M.S. Macauley, P.R. Crocker, and J.C. Paulson Siglec-mediated regulation of immune cell function in disease Nat. Rev. Immunol. 14 2014 653 666
    • (2014) Nat. Rev. Immunol. , vol.14 , pp. 653-666
    • Macauley, M.S.1    Crocker, P.R.2    Paulson, J.C.3
  • 46
    • 84895868553 scopus 로고    scopus 로고
    • Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility
    • Asian Genetic Epidemiology Network Type 2 Diabetes (AGEN-T2D) Consortium South Asian Type 2 Diabetes (SAT2D) Consortium Mexican American Type 2 Diabetes (MAT2D) Consortium Type 2 Diabetes Genetic Exploration by Nex-generation sequencing in muylti-Ethnic Samples (T2D-GENES) Consortium
    • A. Mahajan, M.J. Go, W. Zhang, J.E. Below, K.J. Gaulton, T. Ferreira, M. Horikoshi, A.D. Johnson, M.C. Ng, I. Prokopenko, et al. DIAbetes Genetics Replication And Meta-analysis (DIAGRAM) Consortium Asian Genetic Epidemiology Network Type 2 Diabetes (AGEN-T2D) Consortium South Asian Type 2 Diabetes (SAT2D) Consortium Mexican American Type 2 Diabetes (MAT2D) Consortium Type 2 Diabetes Genetic Exploration by Nex-generation sequencing in muylti-Ethnic Samples (T2D-GENES) Consortium Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility Nat. Genet. 46 2014 234 244
    • (2014) Nat. Genet. , vol.46 , pp. 234-244
    • Mahajan, A.1    Go, M.J.2    Zhang, W.3    Below, J.E.4    Gaulton, K.J.5    Ferreira, T.6    Horikoshi, M.7    Johnson, A.D.8    Ng, M.C.9    Prokopenko, I.10
  • 50
    • 84888137548 scopus 로고    scopus 로고
    • Heritability analyses show visit-to-visit blood pressure variability reflects different pathological phenotypes in younger and older adults: Evidence from UK twins
    • C. Menni, M. Mangino, F. Zhang, G. Clement, H. Snieder, S. Padmanabhan, and T.D. Spector Heritability analyses show visit-to-visit blood pressure variability reflects different pathological phenotypes in younger and older adults: evidence from UK twins J. Hypertens. 31 2013 2356 2361
    • (2013) J. Hypertens. , vol.31 , pp. 2356-2361
    • Menni, C.1    Mangino, M.2    Zhang, F.3    Clement, G.4    Snieder, H.5    Padmanabhan, S.6    Spector, T.D.7
  • 53
    • 84940447289 scopus 로고    scopus 로고
    • Genetic variation and gastric cancer risk: A field synopsis and meta-analysis
    • S. Mocellin, D. Verdi, K.A. Pooley, and D. Nitti Genetic variation and gastric cancer risk: a field synopsis and meta-analysis Gut 64 2015 1209 1219
    • (2015) Gut , vol.64 , pp. 1209-1219
    • Mocellin, S.1    Verdi, D.2    Pooley, K.A.3    Nitti, D.4
  • 54
    • 84900332803 scopus 로고    scopus 로고
    • Effects of parental omega-3 fatty acid intake on offspring microbiome and immunity
    • I.A. Myles, N.B. Pincus, N.M. Fontecilla, and S.K. Datta Effects of parental omega-3 fatty acid intake on offspring microbiome and immunity PLoS ONE 9 2014 e87181
    • (2014) PLoS ONE , vol.9 , pp. e87181
    • Myles, I.A.1    Pincus, N.B.2    Fontecilla, N.M.3    Datta, S.K.4
  • 55
    • 84911972606 scopus 로고    scopus 로고
    • Responsiveness of cardiometabolic-related microbiota to diet is influenced by host genetics
    • A. O'Connor, P.M. Quizon, J.E. Albright, F.T. Lin, and B.J. Bennett Responsiveness of cardiometabolic-related microbiota to diet is influenced by host genetics Mamm. Genome 25 2014 583 599
    • (2014) Mamm. Genome , vol.25 , pp. 583-599
    • O'Connor, A.1    Quizon, P.M.2    Albright, J.E.3    Lin, F.T.4    Bennett, B.J.5
  • 56
    • 84857653737 scopus 로고    scopus 로고
    • Characterization of the ileal microbiota in rejecting and nonrejecting recipients of small bowel transplants
    • P.L. Oh, I. Martínez, Y. Sun, J. Walter, D.A. Peterson, and D.F. Mercer Characterization of the ileal microbiota in rejecting and nonrejecting recipients of small bowel transplants Am. J. Transplant. 12 2012 753 762
    • (2012) Am. J. Transplant. , vol.12 , pp. 753-762
    • Oh, P.L.1    Martínez, I.2    Sun, Y.3    Walter, J.4    Peterson, D.A.5    Mercer, D.F.6
  • 57
    • 84894288992 scopus 로고    scopus 로고
    • Genetics of rheumatoid arthritis contributes to biology and drug discovery
    • GARNET consortium
    • Y. Okada, D. Wu, G. Trynka, T. Raj, C. Terao, K. Ikari, Y. Kochi, K. Ohmura, A. Suzuki, S. Yoshida, et al. RACI consortium GARNET consortium Genetics of rheumatoid arthritis contributes to biology and drug discovery Nature 506 2014 376 381
    • (2014) Nature , vol.506 , pp. 376-381
    • Okada, Y.1    Wu, D.2    Trynka, G.3    Raj, T.4    Terao, C.5    Ikari, K.6    Kochi, Y.7    Ohmura, K.8    Suzuki, A.9    Yoshida, S.10
  • 59
    • 0025082884 scopus 로고
    • Cellulose fermentation by continuous cultures of Ruminococcus albus and Methanobrevibacter smithii
    • S.G. Pavlostathis, T.L. Miller, and M.J. Wolin Cellulose fermentation by continuous cultures of Ruminococcus albus and Methanobrevibacter smithii Appl. Microbiol. Biotechnol. 33 1990 109 116
    • (1990) Appl. Microbiol. Biotechnol. , vol.33 , pp. 109-116
    • Pavlostathis, S.G.1    Miller, T.L.2    Wolin, M.J.3
  • 64
    • 84959914986 scopus 로고    scopus 로고
    • Bovine host genetic variation influences rumen microbial methane production with best selection criterion for low methane emitting and efficiently feed converting hosts based on metagenomic gene abundance
    • R. Roehe, R.J. Dewhurst, C.-A. Duthie, J.A. Rooke, N. McKain, D.W. Ross, J.J. Hyslop, A. Waterhouse, T.C. Freeman, M. Watson, and R.J. Wallace Bovine host genetic variation influences rumen microbial methane production with best selection criterion for low methane emitting and efficiently feed converting hosts based on metagenomic gene abundance PLoS Genet. 12 2016 e1005846
    • (2016) PLoS Genet. , vol.12 , pp. e1005846
    • Roehe, R.1    Dewhurst, R.J.2    Duthie, C.-A.3    Rooke, J.A.4    McKain, N.5    Ross, D.W.6    Hyslop, J.J.7    Waterhouse, A.8    Freeman, T.C.9    Watson, M.10    Wallace, R.J.11
  • 66
    • 67649216515 scopus 로고    scopus 로고
    • CD36, a scavenger receptor involved in immunity, metabolism, angiogenesis, and behavior
    • R.L. Silverstein, and M. Febbraio CD36, a scavenger receptor involved in immunity, metabolism, angiogenesis, and behavior Sci. Signal. 2 2009 re3
    • (2009) Sci. Signal. , vol.2 , pp. re3
    • Silverstein, R.L.1    Febbraio, M.2
  • 68
    • 84939163442 scopus 로고    scopus 로고
    • Site-specific programming of the host epithelial transcriptome by the gut microbiota
    • F. Sommer, I. Nookaew, N. Sommer, P. Fogelstrand, and F. Bäckhed Site-specific programming of the host epithelial transcriptome by the gut microbiota Genome Biol. 16 2015 62
    • (2015) Genome Biol. , vol.16 , pp. 62
    • Sommer, F.1    Nookaew, I.2    Sommer, N.3    Fogelstrand, P.4    Bäckhed, F.5
  • 69
    • 79952748287 scopus 로고    scopus 로고
    • Unravelling the effects of the environment and host genotype on the gut microbiome
    • A. Spor, O. Koren, and R. Ley Unravelling the effects of the environment and host genotype on the gut microbiome Nat. Rev. Microbiol. 9 2011 279 290
    • (2011) Nat. Rev. Microbiol. , vol.9 , pp. 279-290
    • Spor, A.1    Koren, O.2    Ley, R.3
  • 70
    • 28944442466 scopus 로고    scopus 로고
    • Investigations into the influence of host genetics on the predominant eubacteria in the faecal microflora of children
    • J.A. Stewart, V.S. Chadwick, and A. Murray Investigations into the influence of host genetics on the predominant eubacteria in the faecal microflora of children J. Med. Microbiol. 54 2005 1239 1242
    • (2005) J. Med. Microbiol. , vol.54 , pp. 1239-1242
    • Stewart, J.A.1    Chadwick, V.S.2    Murray, A.3
  • 71
    • 34249048365 scopus 로고    scopus 로고
    • Helicobacter pylori evolution and phenotypic diversification in a changing host
    • S. Suerbaum, and C. Josenhans Helicobacter pylori evolution and phenotypic diversification in a changing host Nat. Rev. Microbiol. 5 2007 441 452
    • (2007) Nat. Rev. Microbiol. , vol.5 , pp. 441-452
    • Suerbaum, S.1    Josenhans, C.2
  • 74
    • 0020964894 scopus 로고
    • The resident faecal flora is determined by genetic characteristics of the host. Implications for Crohn's disease?
    • J.P. Van de Merwe, J.H. Stegeman, and M.P. Hazenberg The resident faecal flora is determined by genetic characteristics of the host. Implications for Crohn's disease? Antonie van Leeuwenhoek 49 1983 119 124
    • (1983) Antonie Van Leeuwenhoek , vol.49 , pp. 119-124
    • Van De Merwe, J.P.1    Stegeman, J.H.2    Hazenberg, M.P.3
  • 75
    • 84908406670 scopus 로고    scopus 로고
    • Clostridium ramosum promotes high-fat diet-induced obesity in gnotobiotic mouse models
    • e01530-14
    • A. Woting, N. Pfeiffer, G. Loh, S. Klaus, and M. Blaut Clostridium ramosum promotes high-fat diet-induced obesity in gnotobiotic mouse models MBio 5 2014 e01530-14
    • (2014) MBio , vol.5
    • Woting, A.1    Pfeiffer, N.2    Loh, G.3    Klaus, S.4    Blaut, M.5
  • 76
    • 84878256943 scopus 로고    scopus 로고
    • Genetic variants associated with glycine metabolism and their role in insulin sensitivity and type 2 diabetes
    • DIAGRAM Consortium GENESIS Consortium RISC Consortium
    • W. Xie, A.R. Wood, V. Lyssenko, M.N. Weedon, J.W. Knowles, S. Alkayyali, T.L. Assimes, T. Quertermous, F. Abbasi, J. Paananen, et al. MAGIC Investigators DIAGRAM Consortium GENESIS Consortium RISC Consortium Genetic variants associated with glycine metabolism and their role in insulin sensitivity and type 2 diabetes Diabetes 62 2013 2141 2150
    • (2013) Diabetes , vol.62 , pp. 2141-2150
    • Xie, W.1    Wood, A.R.2    Lyssenko, V.3    Weedon, M.N.4    Knowles, J.W.5    Alkayyali, S.6    Assimes, T.L.7    Quertermous, T.8    Abbasi, F.9    Paananen, J.10
  • 77
    • 77955466657 scopus 로고    scopus 로고
    • Genetics of caffeine consumption and responses to caffeine
    • A. Yang, A.A. Palmer, and H. de Wit Genetics of caffeine consumption and responses to caffeine Psychopharmacology (Berl.) 211 2010 245 257
    • (2010) Psychopharmacology (Berl.) , vol.211 , pp. 245-257
    • Yang, A.1    Palmer, A.A.2    De Wit, H.3
  • 78
    • 84930480156 scopus 로고    scopus 로고
    • Characterization of microbial community in the leachate associated with the decomposition of entombed pigs
    • S.-H. Yang, S.H. Hong, S.B. Cho, J.S. Lim, S.E. Bae, H. Ahn, and E.Y. Lee Characterization of microbial community in the leachate associated with the decomposition of entombed pigs J. Microbiol. Biotechnol. 22 2012 1330 1335
    • (2012) J. Microbiol. Biotechnol. , vol.22 , pp. 1330-1335
    • Yang, S.-H.1    Hong, S.H.2    Cho, S.B.3    Lim, J.S.4    Bae, S.E.5    Ahn, H.6    Lee, E.Y.7
  • 80
    • 84863003734 scopus 로고    scopus 로고
    • Genome-wide efficient mixed-model analysis for association studies
    • X. Zhou, and M. Stephens Genome-wide efficient mixed-model analysis for association studies Nat. Genet. 44 2012 821 824
    • (2012) Nat. Genet. , vol.44 , pp. 821-824
    • Zhou, X.1    Stephens, M.2


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