-
1
-
-
0029132983
-
A small step for the cell, a giant leap for mankind: A hypothesis of neocortical expansion during evolution
-
pmid: 7482803
-
P. Rakic, A small step for the cell, a giant leap for mankind: A hypothesis of neocortical expansion during evolution. Trends Neurosci. 18, 383-388 (1995). doi: 10.1016/0166-2236(95)93934-P; pmid: 7482803
-
(1995)
Trends Neurosci.
, vol.18
, pp. 383-388
-
-
Rakic, P.1
-
2
-
-
0027938146
-
The embryonic vertebrate forebrain: The prosomeric model
-
pmid: 7939711
-
J. L. R. Rubenstein, S. Martinez, K. Shimamura, L. Puelles, The embryonic vertebrate forebrain: The prosomeric model. Science 266, 578-580 (1994). doi: 10.1126/science.7939711; pmid: 7939711
-
(1994)
Science
, vol.266
, pp. 578-580
-
-
Rubenstein, J.L.R.1
Martinez, S.2
Shimamura, K.3
Puelles, L.4
-
3
-
-
84874118170
-
A high-resolution enhancer atlas of the developing telencephalon
-
pmid: 23375746
-
A. Visel et al., A high-resolution enhancer atlas of the developing telencephalon. Cell 152, 895-908 (2013). doi: 10.1016/j.cell.2012.12.041; pmid: 23375746
-
(2013)
Cell
, vol.152
, pp. 895-908
-
-
Visel, A.1
-
4
-
-
84889561601
-
Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism
-
pmid: 24267887
-
N. N. Parikshak et al., Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism. Cell 155, 1008-1021 (2013). doi: 10.1016/j.cell.2013.10.031; pmid: 24267887
-
(2013)
Cell
, vol.155
, pp. 1008-1021
-
-
Parikshak, N.N.1
-
5
-
-
84889583293
-
Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism
-
pmid: 24267886
-
A. J. Willsey et al., Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism. Cell 155, 997-1007 (2013). doi: 10.1016/ j.cell.2013.10.020; pmid: 24267886
-
(2013)
Cell
, vol.155
, pp. 997-1007
-
-
Willsey, A.J.1
-
6
-
-
84937212591
-
FOXG1-dependent dysregulation of GABA/glutamate neuron differentiation in autism spectrum disorders
-
pmid: 26186191
-
J. Mariani et al., FOXG1-Dependent Dysregulation of GABA/ Glutamate Neuron Differentiation in Autism Spectrum Disorders. Cell 162, 375-390 (2015). doi: 10.1016/ j.cell.2015.06.034; pmid: 26186191
-
(2015)
Cell
, vol.162
, pp. 375-390
-
-
Mariani, J.1
-
7
-
-
84881193129
-
Spatial and temporal mapping of de novo mutations in schizophrenia to a fetal prefrontal cortical network
-
pmid: 23911319
-
S. Gulsuner et al., Spatial and temporal mapping of de novo mutations in schizophrenia to a fetal prefrontal cortical network. Cell 154, 518-529 (2013). doi: 10.1016/ j.cell.2013.06.049; pmid: 23911319
-
(2013)
Cell
, vol.154
, pp. 518-529
-
-
Gulsuner, S.1
-
8
-
-
85058412077
-
-
See supplementary materials
-
See supplementary materials.
-
-
-
-
9
-
-
85058377382
-
Integrative functional genomic analysis of human brain development and neuropsychiatric risks
-
M. Li et al., Integrative functional genomic analysis of human brain development and neuropsychiatric risks. Science 362, eaat7615 (2018).
-
(2018)
Science
, vol.362
, pp. eaat7615
-
-
Li, M.1
-
10
-
-
84948741313
-
The PsychENCODE project
-
pmid: 26605881
-
S. Akbarian et al., The PsychENCODE project. Nat. Neurosci. 18, 1707-1712 (2015). doi: 10.1038/nn.4156; pmid: 26605881
-
(2015)
Nat. Neurosci.
, vol.18
, pp. 1707-1712
-
-
Akbarian, S.1
-
11
-
-
84923362619
-
Integrative analysis of 111 reference human epigenomes
-
pmid: 25693563
-
A. Kundaje et al., Integrative analysis of 111 reference human epigenomes. Nature 518, 317-330 (2015). doi: 10.1038/ nature14248; pmid: 25693563
-
(2015)
Nature
, vol.518
, pp. 317-330
-
-
Kundaje, A.1
-
12
-
-
80055015161
-
Temporal dynamics and genetic control of transcription in the human prefrontal cortex
-
pmid: 22031444
-
C. Colantuoni et al., Temporal dynamics and genetic control of transcription in the human prefrontal cortex. Nature 478, 519-523 (2011). doi: 10.1038/nature10524; pmid: 22031444
-
(2011)
Nature
, vol.478
, pp. 519-523
-
-
Colantuoni, C.1
-
13
-
-
84896393703
-
The developmental transcriptome of the human brain: Implications for neurodevelopmental disorders
-
pmid: 24565942
-
A. T. Tebbenkamp, A. J. Willsey, M. W. State, N. Sestan, The developmental transcriptome of the human brain: Implications for neurodevelopmental disorders. Curr. Opin. Neurol. 27, 149-156 (2014). doi: 10.1097/WCO.0000000000000069; pmid: 24565942
-
(2014)
Curr. Opin. Neurol.
, vol.27
, pp. 149-156
-
-
Tebbenkamp, A.T.1
Willsey, A.J.2
State, M.W.3
Sestan, N.4
-
14
-
-
84963544829
-
Single-cell analysis of long non-coding RNAs in the developing human neocortex
-
pmid: 27081004
-
S. J. Liu et al., Single-cell analysis of long non-coding RNAs in the developing human neocortex. Genome Biol. 17, 67 (2016). doi: 10.1186/s13059-016-0932-1; pmid: 27081004
-
(2016)
Genome Biol.
, vol.17
, pp. 67
-
-
Liu, S.J.1
-
15
-
-
85037631415
-
Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex
-
pmid: 29217575
-
T. J. Nowakowski et al., Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex. Science 358, 1318-1323 (2017). doi: 10.1126/science. aap8809; pmid: 29217575
-
(2017)
Science
, vol.358
, pp. 1318-1323
-
-
Nowakowski, T.J.1
-
16
-
-
84993993658
-
Chromosome conformation elucidates regulatory relationships in developing human brain
-
pmid: 27760116
-
H. Won et al., Chromosome conformation elucidates regulatory relationships in developing human brain. Nature 538, 523-527 (2016). doi: 10.1038/nature19847; pmid: 27760116
-
(2016)
Nature
, vol.538
, pp. 523-527
-
-
Won, H.1
-
17
-
-
84865760395
-
GENCODE: The reference human genome annotation for the ENCODE Project
-
pmid: 22955987
-
J. Harrow et al., GENCODE: The reference human genome annotation for The ENCODE Project. Genome Res. 22, 1760-1774 (2012). doi: 10.1101/gr.135350.111; pmid: 22955987
-
(2012)
Genome Res.
, vol.22
, pp. 1760-1774
-
-
Harrow, J.1
-
18
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
The ENCODE Project Consortium, pmid: 22955616
-
The ENCODE Project Consortium, An integrated encyclopedia of DNA elements in the human genome. Nature 489, 57-74 (2012). doi: 10.1038/nature11247; pmid: 22955616
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
-
19
-
-
84875085989
-
The patterns of histone modifications in the vicinity of transcription factor binding sites in human lymphoblastoid cell lines
-
pmid: 23527292
-
Y. Nie, H. Liu, X. Sun, The patterns of histone modifications in the vicinity of transcription factor binding sites in human lymphoblastoid cell lines. PLOS ONE 8, e60002 (2013). doi: 10.1371/journal.pone.0060002; pmid: 23527292
-
(2013)
PLOS ONE
, vol.8
, pp. e60002
-
-
Nie, Y.1
Liu, H.2
Sun, X.3
-
20
-
-
18744400798
-
Beta-catenin directly displaces Groucho/TLE repressors from Tcf/Lef in Wnt-mediated transcription activation
-
pmid: 15768032
-
D. L. Daniels, W. I. Weis, Beta-catenin directly displaces Groucho/TLE repressors from Tcf/Lef in Wnt-mediated transcription activation. Nat. Struct. Mol. Biol. 12, 364-371 (2005). doi: 10.1038/nsmb912; pmid: 15768032
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 364-371
-
-
Daniels, D.L.1
Weis, W.I.2
-
21
-
-
60549111634
-
WGCNA: An R package for weighted correlation network analysis
-
pmid: 19114008
-
P. Langfelder, S. Horvath, WGCNA: An R package for weighted correlation network analysis. BMC Bioinformatics 9, 559 (2008). doi: 10.1186/1471-2105-9-559; pmid: 19114008
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 559
-
-
Langfelder, P.1
Horvath, S.2
-
22
-
-
84992147507
-
A systematic variant annotation approach for ranking genes associated with autism spectrum disorders
-
pmid: 27790361
-
E. Larsen et al., A systematic variant annotation approach for ranking genes associated with autism spectrum disorders. Mol. Autism 7, 44 (2016). doi: 10.1186/s13229-016-0103-y; pmid: 27790361
-
(2016)
Mol. Autism
, vol.7
, pp. 44
-
-
Larsen, E.1
-
23
-
-
84952674076
-
Human cerebral organoids recapitulate gene expression programs of fetal neocortex development
-
pmid: 26644564
-
J. G. Camp et al., Human cerebral organoids recapitulate gene expression programs of fetal neocortex development. Proc. Natl. Acad. Sci. U.S.A. 112, 15672-15677 (2015). pmid: 26644564
-
(2015)
Proc. Natl. Acad. Sci. U.S.A.
, vol.112
, pp. 15672-15677
-
-
Camp, J.G.1
-
24
-
-
85039917750
-
The Dynamic Landscape of Open Chromatin during Human Cortical Neurogenesis
-
pmid: 29307494
-
L. de la Torre-Ubieta et al., The Dynamic Landscape of Open Chromatin during Human Cortical Neurogenesis. Cell 172, 289-304.e18 (2018). doi: 10.1016/j.cell.2017.12.014; pmid: 29307494
-
(2018)
Cell
, vol.172
, pp. 289-289e18
-
-
De La Torre-Ubieta, L.1
-
25
-
-
85016140982
-
Genome-wide changes in lncRNA, splicing, and regional gene expression patterns in autism
-
pmid: 27919067
-
N. N. Parikshak et al., Genome-wide changes in lncRNA, splicing, and regional gene expression patterns in autism. Nature 540, 423-427 (2016). doi: 10.1038/nature20612; pmid: 27919067
-
(2016)
Nature
, vol.540
, pp. 423-427
-
-
Parikshak, N.N.1
-
26
-
-
84924561748
-
Evolutionary changes in promoter and enhancer activity during human corticogenesis
-
pmid: 25745175
-
S. K. Reilly et al., Evolutionary changes in promoter and enhancer activity during human corticogenesis. Science 347, 1155-1159 (2015). doi: 10.1126/science.1260943; pmid: 25745175
-
(2015)
Science
, vol.347
, pp. 1155-1159
-
-
Reilly, S.K.1
-
27
-
-
85058394301
-
Spatiotemporal transcriptomic divergence across human and macaque brain development
-
Y. Zhu et al., Spatiotemporal transcriptomic divergence across human and macaque brain development. Science 362, eaat8077 (2018).
-
(2018)
Science
, vol.362
, pp. eaat8077
-
-
Zhu, Y.1
-
28
-
-
84991263060
-
Transformation of the radial glia scaffold demarcates two stages of human cerebral cortex development
-
pmid: 27657449
-
T. J. Nowakowski, A. A. Pollen, C. Sandoval-Espinosa, A. R. Kriegstein, Transformation of the Radial Glia Scaffold Demarcates Two Stages of Human Cerebral Cortex Development. Neuron 91, 1219-1227 (2016). doi: 10.1016/ j.neuron.2016.09.005; pmid: 27657449
-
(2016)
Neuron
, vol.91
, pp. 1219-1227
-
-
Nowakowski, T.J.1
Pollen, A.A.2
Sandoval-Espinosa, C.3
Kriegstein, A.R.4
-
29
-
-
84867829870
-
Individual common variants exert weak effects on the risk for autism spectrum disorders
-
pmid: 22843504
-
R. Anney et al., Individual common variants exert weak effects on the risk for autism spectrum disorders. Hum. Mol. Genet. 21, 4781-4792 (2012). doi: 10.1093/hmg/dds301; pmid: 22843504
-
(2012)
Hum. Mol. Genet.
, vol.21
, pp. 4781-4792
-
-
Anney, R.1
-
30
-
-
84905582433
-
Most genetic risk for autism resides with common variation
-
pmid: 25038753
-
T. Gaugler et al., Most genetic risk for autism resides with common variation. Nat. Genet. 46, 881-885 (2014). doi: 10.1038/ng.3039; pmid: 25038753
-
(2014)
Nat. Genet.
, vol.46
, pp. 881-885
-
-
Gaugler, T.1
-
31
-
-
84871298155
-
Common genetic variants, acting additively, are a major source of risk for autism
-
pmid: 23067556
-
L. Klei et al., Common genetic variants, acting additively, are a major source of risk for autism. Mol. Autism 3, 9 (2012). doi: 10.1186/2040-2392-3-9; pmid: 23067556
-
(2012)
Mol. Autism
, vol.3
, pp. 9
-
-
Klei, L.1
-
32
-
-
85021757773
-
Polygenic transmission disequilibrium confirms that common and rare variation act additively to create risk for autism spectrum disorders
-
pmid: 28504703
-
D. J. Weiner et al., Polygenic transmission disequilibrium confirms that common and rare variation act additively to create risk for autism spectrum disorders. Nat. Genet. 49, 978-985 (2017). doi: 10.1038/ng.3863; pmid: 28504703
-
(2017)
Nat. Genet.
, vol.49
, pp. 978-985
-
-
Weiner, D.J.1
-
33
-
-
85046026156
-
An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder
-
pmid: 29700473
-
D. M. Werling et al., An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder. Nat. Genet. 50, 727-736 (2018). doi: 10.1038/s41588-018-0107-y; pmid: 29700473
-
(2018)
Nat. Genet.
, vol.50
, pp. 727-736
-
-
Werling, D.M.1
-
34
-
-
85016156181
-
The GeneCards suite: From gene data mining to disease genome sequence analyses
-
pmid: 27322403
-
G. Stelzer et al., The GeneCards Suite: From Gene Data Mining to Disease Genome Sequence Analyses. Curr. Protoc. Bioinformatics 54, 1.30.1-1.30.33 (2016). pmid: 27322403
-
(2016)
Curr. Protoc. Bioinformatics
, vol.54
, pp. 1301-13033
-
-
Stelzer, G.1
-
35
-
-
85003972512
-
Rare inherited and de Novo CNVs reveal complex contributions to ASD risk in multiplex families
-
pmid: 27569545
-
V. M. Leppa et al., Rare Inherited and De Novo CNVs Reveal Complex Contributions to ASD Risk in Multiplex Families. Am. J. Hum. Genet. 99, 540-554 (2016). doi: 10.1016/ j.ajhg.2016.06.036; pmid: 27569545
-
(2016)
Am. J. Hum. Genet.
, vol.99
, pp. 540-554
-
-
Leppa, V.M.1
-
36
-
-
85030709217
-
Genomic patterns of de novo mutation in simplex autism
-
pmid: 28965761
-
T. N. Turner et al., Genomic Patterns of De Novo Mutation in Simplex Autism. Cell 171, 710-722.e12 (2017). doi: 10.1016/ j.cell.2017.08.047; pmid: 28965761
-
(2017)
Cell
, vol.171
, pp. 710-710e12
-
-
Turner, T.N.1
-
37
-
-
85042546549
-
Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection
-
pmid: 29483656
-
A. F. Pardiñas et al., Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection. Nat. Genet. 50, 381-389 (2018). doi: 10.1038/s41588-018-0059-2; pmid: 29483656
-
(2018)
Nat. Genet.
, vol.50
, pp. 381-389
-
-
Pardiñas, A.F.1
-
38
-
-
85041117222
-
The rise of three-dimensional human brain cultures
-
pmid: 29364288
-
S. P. Paşca, The rise of three-dimensional human brain cultures. Nature 553, 437-445 (2018). pmid: 29364288
-
(2018)
Nature
, vol.553
, pp. 437-445
-
-
Paşca, S.P.1
-
39
-
-
84934442315
-
Functional cortical neurons and astrocytes from human pluripotent stem cells in 3D culture
-
pmid: 26005811
-
A. M. Paşca et al., Functional cortical neurons and astrocytes from human pluripotent stem cells in 3D culture. Nat. Methods 12, 671-678 (2015). doi: 10.1038/nmeth.3415; pmid: 26005811
-
(2015)
Nat. Methods
, vol.12
, pp. 671-678
-
-
Paşca, A.M.1
-
40
-
-
84964619895
-
Brain-region-specific organoids using minibioreactors for modeling ZIKV exposure
-
pmid: 27118425
-
X. Qian et al., Brain-Region-Specific Organoids Using Minibioreactors for Modeling ZIKV Exposure. Cell 165, 1238-1254 (2016). doi: 10.1016/j.cell.2016.04.032; pmid: 27118425
-
(2016)
Cell
, vol.165
, pp. 1238-1254
-
-
Qian, X.1
-
41
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
pmid: 19910308
-
M. D. Robinson, D. J. McCarthy, G. K. Smyth, edgeR: A Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140 (2010). doi: 10.1093/bioinformatics/btp616; pmid: 19910308
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
42
-
-
85046298440
-
Integrating single-cell transcriptomic data across different conditions, technologies, and species
-
pmid: 29608179
-
A. Butler, P. Hoffman, P. Smibert, E. Papalexi, R. Satija, Integrating single-cell transcriptomic data across different conditions, technologies, and species. Nat. Biotechnol. 36, 411-420 (2018). doi: 10.1038/nbt.4096; pmid: 29608179
-
(2018)
Nat. Biotechnol.
, vol.36
, pp. 411-420
-
-
Butler, A.1
Hoffman, P.2
Smibert, P.3
Papalexi, E.4
Satija, R.5
-
43
-
-
84900873950
-
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
-
pmid: 24658644
-
C. Trapnell et al., The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nat. Biotechnol. 32, 381-386 (2014). doi: 10.1038/ nbt.2859; pmid: 24658644
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 381-386
-
-
Trapnell, C.1
-
44
-
-
85058418230
-
-
https://www.doi.org/10.1093/nar/gkn698
-
-
-
-
45
-
-
67849130563
-
ToppGene Suite for gene list enrichment analysis and candidate gene prioritization
-
pmid: 19465376
-
J. Chen, E. E. Bardes, B. J. Aronow, A. G. Jegga, ToppGene Suite for gene list enrichment analysis and candidate gene prioritization. Nucleic Acids Res. 37, W305-W311 (2009). doi: 10.1093/nar/gkp427; pmid: 19465376
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. W305-W311
-
-
Chen, J.1
Bardes, E.E.2
Aronow, B.J.3
Jegga, A.G.4
-
46
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
pmid: 18798982
-
Y. Zhang et al., Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137 (2008). doi: 10.1186/gb-2008-9-9-r137; pmid: 18798982
-
(2008)
Genome Biol.
, vol.9
, pp. R137
-
-
Zhang, Y.1
-
47
-
-
84857707318
-
ChromHMM: Automating chromatin-state discovery and characterization
-
pmid: 22373907
-
J. Ernst, M. Kellis, ChromHMM: Automating chromatin-state discovery and characterization. Nat. Methods 9, 215-216 (2012). doi: 10.1038/nmeth.1906; pmid: 22373907
-
(2012)
Nat. Methods
, vol.9
, pp. 215-216
-
-
Ernst, J.1
Kellis, M.2
-
48
-
-
85040936337
-
JASPAR 2018: Update of the open-access database of transcription factor binding profiles and its web framework
-
pmid: 29140473
-
A. Khan et al., JASPAR 2018: Update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. 46 (D1), D260-D266 (2018). doi: 10.1093/nar/gkx1126; pmid: 29140473
-
(2018)
Nucleic Acids Res.
, vol.46
, Issue.D1
, pp. D260-D266
-
-
Khan, A.1
|