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Volumn 27, Issue R2, 2018, Pages R234-R241

Long reads: Their purpose and place

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; HIGH THROUGHPUT SEQUENCING; MATURITY; MEDICAL RESEARCH; REVIEW; ALGORITHM; ANIMAL; DNA SEQUENCE; GENOMICS; HUMAN; PROCEDURES;

EID: 85054408282     PISSN: 09646906     EISSN: 14602083     Source Type: Journal    
DOI: 10.1093/hmg/ddy177     Document Type: Review
Times cited : (237)

References (54)
  • 1
    • 0016800090 scopus 로고
    • A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase
    • Sanger, F. and Coulson, A. (1975) A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase. J. Mol. Biol., 94, 441?448.
    • (1975) J. Mol. Biol , vol.94 , pp. 441-448
    • Sanger, F.1    Coulson, A.2
  • 2
    • 84917737637 scopus 로고    scopus 로고
    • Mappability and read length
    • Li, W. and Freudenberg, J. (2014) Mappability and read length. Front. Genet., 5, 381.
    • (2014) Front. Genet , vol.5 , pp. 381
    • Li, W.1    Freudenberg, J.2
  • 4
    • 84878251175 scopus 로고    scopus 로고
    • Phase-defined complete sequencing of the HLA genes by next-generation sequencing
    • Hosomichi, K., Jinam, T.A., Mitsunaga, S., Nakaoka, H. and Inoue, I. (2013) Phase-defined complete sequencing of the HLA genes by next-generation sequencing. BMC Genomics, 14, 355?355.
    • (2013) BMC Genomics , vol.14 , pp. 355-355
    • Hosomichi, K.1    Jinam, T.A.2    Mitsunaga, S.3    Nakaoka, H.4    Inoue, I.5
  • 6
    • 0037474152 scopus 로고    scopus 로고
    • Zero-mode waveguides for single-molecule analysis at high concentrations
    • Levene, M.J., Korlach, J., Turner, S.W., Foquet, M., Craighead, H.G. and Webb, W.W. (2003) Zero-mode waveguides for single-molecule analysis at high concentrations. Science, 299, 682?686.
    • (2003) Science , vol.299 , pp. 682-686
    • Levene, M.J.1    Korlach, J.2    Turner, S.W.3    Foquet, M.4    Craighead, H.G.5    Webb, W.W.6
  • 8
    • 77956125365 scopus 로고    scopus 로고
    • A flexible and efficient template format for circular consensus sequencing and SNP detection
    • Travers, K.J., Chin, C.-S., Rank, D.R., Eid, J.S. and Turner, S.W. (2010) A flexible and efficient template format for circular consensus sequencing and SNP detection. Nucleic Acids Res., 38, e159.
    • (2010) Nucleic Acids Res , vol.38 , pp. e159
    • Travers, K.J.1    Chin, C.-S.2    Rank, D.R.3    Eid, J.S.4    Turner, S.W.5
  • 11
    • 84971280828 scopus 로고    scopus 로고
    • Three decades of nanopore sequencing
    • Deamer, D., Akeson,M. and Branton, D. (2016) Three decades of nanopore sequencing. Nat. Biotechnol., 34, 518?524.
    • (2016) Nat. Biotechnol , vol.34 , pp. 518-524
    • Deamer, D.1    Akeson, M.2    Branton, D.3
  • 17
    • 85042930068 scopus 로고    scopus 로고
    • ARCS: scaffolding genome drafts with linked reads
    • Yeo, S., Coombe, L., Warren, R.L., Chu, J. and Birol, I. (2018) ARCS: scaffolding genome drafts with linked reads. Bioinformatics, 34, 725?731.
    • (2018) Bioinformatics , vol.34 , pp. 725-731
    • Yeo, S.1    Coombe, L.2    Warren, R.L.3    Chu, J.4    Birol, I.5
  • 20
    • 84929906810 scopus 로고    scopus 로고
    • Mapping bias overestimates reference allele frequencies at the HLA genes in the 1000 genomes project phase I data
    • Brandt, D.Y.C., Aguiar, V.R.C., Bitarello, B.D., Nunes, K., Goudet, J. and Meyer, D. (2015) Mapping bias overestimates reference allele frequencies at the HLA genes in the 1000 genomes project phase I data. G3 (Bethesda)., 5, 931?941.
    • (2015) G3 (Bethesda) , vol.5 , pp. 931-941
    • Brandt, D.Y.C.1    Aguiar, V.R.C.2    Bitarello, B.D.3    Nunes, K.4    Goudet, J.5    Meyer, D.6
  • 21
    • 79956307251 scopus 로고    scopus 로고
    • Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
    • Lunter, G. and Goodson, M. (2011) Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res., 21, 936?939.
    • (2011) Genome Res , vol.21 , pp. 936-939
    • Lunter, G.1    Goodson, M.2
  • 30
    • 84897387657 scopus 로고    scopus 로고
    • Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls
    • Zook, J.M., Chapman, B., Wang, J., Mittelman, D., Hofmann, O., Hide, W. and Salit, M. (2014) Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls. Nat. Biotechnol., 32, 246?251.
    • (2014) Nat. Biotechnol , vol.32 , pp. 246-251
    • Zook, J.M.1    Chapman, B.2    Wang, J.3    Mittelman, D.4    Hofmann, O.5    Hide, W.6    Salit, M.7
  • 34
    • 84913554630 scopus 로고    scopus 로고
    • One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly
    • Koren, S. and Phillippy, A.M. (2015) One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly. Curr. Opin. Microbiol., 23, 110?120.
    • (2015) Curr. Opin. Microbiol , vol.23 , pp. 110-120
    • Koren, S.1    Phillippy, A.M.2
  • 35
    • 85043511238 scopus 로고    scopus 로고
    • Genomic analysis of hospital plumbing reveals diverse reservoir of bacterial plasmids conferring carbapenem resistance
    • Weingarten, R.A., Johnson, R.C., Conlan, S., Ramsburg, A.M., Dekker, J.P., Lau, A.F., Khil, P., Odom, R.T., Deming, C., Park, M. et al. (2018) Genomic analysis of hospital plumbing reveals diverse reservoir of bacterial plasmids conferring carbapenem resistance. MBio, 9, e02011-17.
    • (2018) MBio , vol.9 , pp. e02011-e02017
    • Weingarten, R.A.1    Johnson, R.C.2    Conlan, S.3    Ramsburg, A.M.4    Dekker, J.P.5    Lau, A.F.6    Khil, P.7    Odom, R.T.8    Deming, C.9    Park, M.10
  • 40
    • 85019943375 scopus 로고    scopus 로고
    • Sequencing the CYP2D6 gene: from variant allele discovery to clinical pharmacogenetic testing
    • Yang, Y., Botton, M.R., Scott, E.R. and Scott, S.A. (2017) Sequencing the CYP2D6 gene: from variant allele discovery to clinical pharmacogenetic testing. Pharmacogenomics, 18, 673?685.
    • (2017) Pharmacogenomics , vol.18 , pp. 673-685
    • Yang, Y.1    Botton, M.R.2    Scott, E.R.3    Scott, S.A.4
  • 41
    • 85041311320 scopus 로고    scopus 로고
    • Single molecule real-Time DNA sequencing of HLA genes at ultra-high resolution from 126 International HLA and Immunogenetics Workshop cell lines
    • Turner, T.R., Hayhurst, J.D., Hayward, D.R., Bultitude, W.P., Barker, D.J., Robinson, J., Madrigal, J.A., Mayor, N.P. and Marsh, S.G.E. (2018) Single molecule real-Time DNA sequencing of HLA genes at ultra-high resolution from 126 International HLA and Immunogenetics Workshop cell lines. HLA, 91, 88?101.
    • (2018) HLA , vol.91 , pp. 88-101
    • Turner, T.R.1    Hayhurst, J.D.2    Hayward, D.R.3    Bultitude, W.P.4    Barker, D.J.5    Robinson, J.6    Madrigal, J.A.7    Mayor, N.P.8    Marsh, S.G.E.9
  • 44
    • 85040911905 scopus 로고    scopus 로고
    • Long-read sequencing of the coffee bean transcriptome reveals the diversity of full-length transcripts
    • Cheng, B., Furtado, A. and Henry, R.J. (2017) Long-read sequencing of the coffee bean transcriptome reveals the diversity of full-length transcripts. GigaScience, 6, 1?13.
    • (2017) GigaScience , vol.6 , pp. 1-13
    • Cheng, B.1    Furtado, A.2    Henry, R.J.3
  • 47
    • 84928812813 scopus 로고    scopus 로고
    • Quantitative and multiplexed DNA methylation analysis using long-read single-molecule real-Time bisulfite sequencing (SMRT-BS)
    • Yang, Y., Sebra, R., Pullman, B.S., Qiao, W., Peter, I., Desnick, R.J., Geyer, C.R., DeCoteau, J.F. and Scott, S.A. (2015) Quantitative and multiplexed DNA methylation analysis using long-read single-molecule real-Time bisulfite sequencing (SMRT-BS). BMC Genomics, 16, 350?310.
    • (2015) BMC Genomics , vol.16 , pp. 350-310
    • Yang, Y.1    Sebra, R.2    Pullman, B.S.3    Qiao, W.4    Peter, I.5    Desnick, R.J.6    Geyer, C.R.7    DeCoteau, J.F.8    Scott, S.A.9
  • 52
    • 85034624837 scopus 로고    scopus 로고
    • A novel approach using long-read sequencing and ddPCR to investigate gonadal mosaicism and estimate recurrence risk in two families with developmental disorders
    • Wilbe, M., Gudmundsson, S., Johansson, J., Ameur, A., Stattin, E.-L., Annerén, G., Malmgren, H., Frykholm, C. and Bondeson, M.-L. (2017) A novel approach using long-read sequencing and ddPCR to investigate gonadal mosaicism and estimate recurrence risk in two families with developmental disorders. Prenat. Diagn., 37, 1146?1154.
    • (2017) Prenat. Diagn , vol.37 , pp. 1146-1154
    • Wilbe, M.1    Gudmundsson, S.2    Johansson, J.3    Ameur, A.4    Stattin, E.-L.5    Annerén, G.6    Malmgren, H.7    Frykholm, C.8    Bondeson, M.-L.9
  • 54
    • 85047168977 scopus 로고    scopus 로고
    • Single molecule real-Time (SMRT) sequencing comes of age: Applications and utilities for medical diagnostics
    • Ardui, S., Ameur, A., Vermeesch, J.R. and Hestand, M.S. (2018) Single molecule real-Time (SMRT) sequencing comes of age: Applications and utilities for medical diagnostics. Nucleic Acids Res., 46, 2159?2168
    • (2018) Nucleic Acids Res , vol.46 , pp. 2159-2168
    • Ardui, S.1    Ameur, A.2    Vermeesch, J.R.3    Hestand, M.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.