De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

Science

Volumn 356, Issue 6333, 2017, Pages 92-95

  Dudchenko, Olga ^a,b,c   Batra, Sanjit S ^a,b   Omer, Arina D ^a,b   Nyquist, Sarah K ^a,b   Hoeger, Marie ^a,b   Durand, Neva C ^a,b   Shamim, Muhammad S ^a,b   Machol, Ido ^a,b   Lander, Eric S ^d,e   Aiden, Aviva Presser ^a,b,f   Aiden, Erez Lieberman ^a,b,c,d  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

^b Rice University   (United States)

^c RICE UNIVERSITY   (United States)

^d MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^e HARVARD MEDICAL SCHOOL   (United States)

^f TEXAS CHILDREN S HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOME; DISEASE VECTOR; GENETIC ANALYSIS; GENETIC ENGINEERING; GENOME; MOSQUITO;

AEDES AEGYPTI; ARTICLE; CHROMOSOME SIZE; CULEX QUINQUEFASCIATUS; INSECT GENOME; NONHUMAN; PRIORITY JOURNAL; AEDES; ANIMAL; CONFORMATION; CONSERVED SEQUENCE; CONTIG MAPPING; CULEX; GENE REARRANGEMENT; GENETICS; HUMAN; PROCEDURES; VALIDATION STUDY;

AEDES AEGYPTI; CULEX PIPIENS QUINQUEFASCIATUS;

AEDES; ANIMALS; CONSERVED SEQUENCE; CONTIG MAPPING; CULEX; GENE REARRANGEMENT; GENOME, INSECT; HUMANS; NUCLEIC ACID CONFORMATION;

EID: 85017022957     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.aal3327     Document Type: Article

References (25)

1. A. Harmon, "Team of Rival Scientists Comes Together to Fight Zika," New York Times, 30 March 2016; www.nytimes.com/2016/03/31/us/mapping-a-genetic-strategy-to-fight-the-zikavirus.html?-r=0.
2. S. Gnerre et al., Proc. Natl. Acad. Sci. U.S.A. 108, 1513-1518 (2011).
3. L. J. S. Williams et al., Genome Res. 22, 2241-2249 (2012).
4. E. Lieberman-Aiden et al., Science 326, 289-293 (2009).
5. S. S. P. Rao et al., Cell 159, 1665-1680 (2014).
6. N. Kaplan, J. Dekker, Nat. Biotechnol. 31, 1143-1147 (2013).
7. H. Marie-Nelly et al., Nat. Commun. 5, 5695 (2014).
8. C. L. Peichel, S. T. Sullivan, I. Liachko, M. A. White; http://biorxiv.org/content/early/2016/08/09/068528 (2016).
9. N. H. Putnam et al., Genome Res. 26, 342-350 (2016).
10. J. N. Burton et al., Nat. Biotechnol. 31, 1119-1125 (2013).
11. D. M. Bickhart et al.; http://biorxiv.org/content/early/2016/07/18/064352 (2016).
12. A. M. Session et al., Nature 538, 336-343 (2016).
13. R. R. Love, N. I. Weisenfeld, D. B. Jaffe, N. J. Besansky, D. E. Neafsey, BMC Genomics 17, 187 (2016).
14. E. S. Lander et al., Nature 409, 860-921 (2001).
15. J. C. Venter et al., Science 291, 1304-1351 (2001).
16. M. Pendleton et al., Nat. Methods 12, 780-786 (2015).
17. D. B. Jaffe et al., Genome Res. 13, 91-96 (2003).
18. V. Nene et al., Science 316, 1718-1723 (2007).
19. P. Juneja et al., PLOS Negl. Trop. Dis. 8, e2652 (2014).
20. P. Arensburger et al., Science 330, 86-88 (2010).
21. P. V. Hickner, A. Mori, D. D. Chadee, D. W. Severson, J. Hered. 104, 649-655 (2013).
22. N. C. Durand et al., Cell Syst. 3, 95-98 (2016).
23. N. C. Durand et al., Cell Syst. 3, 99-101 (2016).
24. M. R. Hübner, D. L. Spector, Annu. Rev. Biophys. 39, 471-489 (2010).
25. M. A. Ferguson-Smith, V. Trifonov, Nat. Rev. Genet. 8, 950-962 (2007).