메뉴 건너뛰기




Volumn 10, Issue 5, 2015, Pages

HLA typing for the next generation

Author keywords

[No Author keywords available]

Indexed keywords

HLA A ANTIGEN; HLA ANTIGEN CLASS 1; HLA B ANTIGEN; HLA C ANTIGEN;

EID: 84936848638     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0127153     Document Type: Article
Times cited : (123)

References (28)
  • 2
    • 0344721480 scopus 로고    scopus 로고
    • Complete sequence and gene map of a human major histocompatibility complex. The MHC sequencing consortium
    • PubMed PMID: 10553908
    • Consortium TMs. Complete sequence and gene map of a human major histocompatibility complex. The MHC sequencing consortium. Nature. 1999; 401(6756):921-3. PubMed PMID: 10553908.
    • (1999) Nature , vol.401 , Issue.6756 , pp. 921-923
  • 3
    • 77949675926 scopus 로고    scopus 로고
    • Nomenclature for factors of the HLA system, 2010
    • Epub 2010/04/02. PubMed PMID: 20356336; PubMed Central PMCID: PMC2848993
    • Marsh SGE, Albert ED, Bodmer WF, Bontrop RE, Dupont B, Erlich HA, et al. Nomenclature for factors of the HLA system, 2010. Tissue antigens. 2010; 75(4):291-455. Epub 2010/04/02. doi: 10.1111/j. 1399-0039.2010.01466.x PubMed PMID: 20356336; PubMed Central PMCID: PMC2848993.
    • (2010) Tissue Antigens , vol.75 , Issue.4 , pp. 291-455
    • Marsh, S.G.E.1    Albert, E.D.2    Bodmer, W.F.3    Bontrop, R.E.4    Dupont, B.5    Erlich, H.A.6
  • 4
    • 0035161548 scopus 로고    scopus 로고
    • IMGT/HLA Database-a sequence database for the human major histocompatibility complex
    • PMID: 11125094
    • Robinson J, Waller MJ, Parham P, Bodmer JG, Marsh SGE. IMGT/HLA Database-a sequence database for the human major histocompatibility complex. Nucl Acids Res. 2001; 29(1):210-3. doi: 10. 1093/nar/29.1.210 PMID: 11125094
    • (2001) Nucl Acids Res , vol.29 , Issue.1 , pp. 210-213
    • Robinson, J.1    Waller, M.J.2    Parham, P.3    Bodmer, J.G.4    Marsh, S.G.E.5
  • 6
    • 0030006049 scopus 로고    scopus 로고
    • Population biology of antigen presentation by MHC class i molecules
    • PubMed PMID: 8600539
    • Parham P, Ohta T. Population biology of antigen presentation by MHC class I molecules. Science. 1996; 272(5258):67-74. PubMed PMID: 8600539.
    • (1996) Science , vol.272 , Issue.5258 , pp. 67-74
    • Parham, P.1    Ohta, T.2
  • 7
    • 0023764283 scopus 로고
    • Pattern of nucleotide substitution at major histocompatibility complex class i loci reveals overdominant selection
    • PubMed PMID: 3412472
    • Hughes AL, Nei M. Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature. 1988; 335(6186):167-70. PubMed PMID: 3412472.
    • (1988) Nature , vol.335 , Issue.6186 , pp. 167-170
    • Hughes, A.L.1    Nei, M.2
  • 8
    • 84873593975 scopus 로고    scopus 로고
    • The IMGT/HLA database
    • Epub 2012/10/20. PubMed PMID: 23080122; PubMed Central PMCID: PMC3531221 Database issue
    • Robinson J, Halliwell JA, McWilliam H, Lopez R, Parham P, Marsh SG. The IMGT/HLA database. Nucleic acids research. 2013; 41(Database issue):D1222-7. Epub 2012/10/20. doi: 10.1093/nar/gks949 PubMed PMID: 23080122; PubMed Central PMCID: PMC3531221.
    • (2013) Nucleic Acids Research , vol.41 , pp. D1222-D1227
    • Robinson, J.1    Halliwell, J.A.2    McWilliam, H.3    Lopez, R.4    Parham, P.5    Marsh, S.G.6
  • 9
    • 84873602709 scopus 로고    scopus 로고
    • A one-step DNA sequencing strategy to HLA type hematopoietic stem cell donors at recruitment-rethinking typing strategies
    • PubMed PMID: 23398508
    • Tu B, Cha N, Yang R, Ng J, Hurley CK. A one-step DNA sequencing strategy to HLA type hematopoietic stem cell donors at recruitment-rethinking typing strategies. Tissue Antigens. 2013; 81(3):150-60. doi: 10.1111/tan.12072 PubMed PMID: 23398508.
    • (2013) Tissue Antigens , vol.81 , Issue.3 , pp. 150-160
    • Tu, B.1    Cha, N.2    Yang, R.3    Ng, J.4    Hurley, C.K.5
  • 10
    • 79551676183 scopus 로고    scopus 로고
    • A multi-site study using high-resolution HLA genotyping by next generation sequencing
    • PubMed PMID: 21299525
    • Holcomb CL, Höglund B, Anderson MW, Blake LA, Böhme I, Egholm M, et al. A multi-site study using high-resolution HLA genotyping by next generation sequencing. Tissue Antigens. 2011; 77(3):206-17. doi: 10.1111/j.1399-0039.2010.01606.x PubMed PMID: 21299525.
    • (2011) Tissue Antigens , vol.77 , Issue.3 , pp. 206-217
    • Holcomb, C.L.1    Höglund, B.2    Anderson, M.W.3    Blake, L.A.4    Böhme, I.5    Egholm, M.6
  • 11
    • 84861865679 scopus 로고    scopus 로고
    • High-throughput, highfidelity HLA genotyping with deep sequencing
    • PubMed PMID: 22589303; PubMed Central PMCID: PMCPMC3365218
    • Wang C, Krishnakumar S, Wilhelmy J, Babrzadeh F, Stepanyan L, Su LF, et al. High-throughput, highfidelity HLA genotyping with deep sequencing. Proc Natl Acad Sci U S A. 2012; 109(22):8676-81. doi: 10.1073/pnas.1206614109 PubMed PMID: 22589303; PubMed Central PMCID: PMCPMC3365218.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , Issue.22 , pp. 8676-8681
    • Wang, C.1    Krishnakumar, S.2    Wilhelmy, J.3    Babrzadeh, F.4    Stepanyan, L.5    Su, L.F.6
  • 12
    • 84866632618 scopus 로고    scopus 로고
    • Super high resolution for single molecule-sequence-based typing of classical HLA loci at the 8-digit level using next generation sequencers
    • PubMed PMID: 22861646
    • Shiina T, Suzuki S, Ozaki Y, Taira H, Kikkawa E, Shigenari A, et al. Super high resolution for single molecule-sequence-based typing of classical HLA loci at the 8-digit level using next generation sequencers. Tissue Antigens. 2012; 80(4):305-16. doi: 10.1111/j.1399-0039.2012.01941.x PubMed PMID: 22861646.
    • (2012) Tissue Antigens , vol.80 , Issue.4 , pp. 305-316
    • Shiina, T.1    Suzuki, S.2    Ozaki, Y.3    Taira, H.4    Kikkawa, E.5    Shigenari, A.6
  • 14
    • 0030044094 scopus 로고    scopus 로고
    • Sequenase sequence profiles used for HLA-DPB1 sequencing-based typing
    • Epub 1996/01/01. PubMed PMID: 8929715
    • Rozemuller EH, Chadwick B, Charron D, Baxter-Lowe LA, Eliaou JF, Johnston-Dow L, et al. Sequenase sequence profiles used for HLA-DPB1 sequencing-based typing. Tissue Antigens. 1996; 47 (1):72-9. Epub 1996/01/01. PubMed PMID: 8929715.
    • (1996) Tissue Antigens , vol.47 , Issue.1 , pp. 72-79
    • Rozemuller, E.H.1    Chadwick, B.2    Charron, D.3    Baxter-Lowe, L.A.4    Eliaou, J.F.5    Johnston-Dow, L.6
  • 15
    • 58149234737 scopus 로고    scopus 로고
    • Real-time DNA sequencing from single polymerase molecules
    • Epub 2008/11/22. PubMed PMID: 19023044
    • Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, et al. Real-time DNA sequencing from single polymerase molecules. Science. 2009; 323(5910):133-8. Epub 2008/11/22. doi: 10.1126/science.1162986 PubMed PMID: 19023044.
    • (2009) Science , vol.323 , Issue.5910 , pp. 133-138
    • Eid, J.1    Fehr, A.2    Gray, J.3    Luong, K.4    Lyle, J.5    Otto, G.6
  • 16
    • 33645775299 scopus 로고    scopus 로고
    • Genetic analysis of completely sequenced disease-associated MHC haplotypes identifies shuffling of segments in recent human history
    • PubMed PMID: 16440057
    • Traherne J, Horton R, Roberts A, Miretti M, Hurles M, Stewart C, et al. Genetic analysis of completely sequenced disease-associated MHC haplotypes identifies shuffling of segments in recent human history. PLoS genetics. 2006; 2(1):e9. PubMed PMID: 16440057.
    • (2006) PLoS Genetics , vol.2 , Issue.1 , pp. e9
    • Traherne, J.1    Horton, R.2    Roberts, A.3    Miretti, M.4    Hurles, M.5    Stewart, C.6
  • 17
    • 3042569525 scopus 로고    scopus 로고
    • Complete MHC haplotype sequencing for common disease gene mapping
    • PubMed PMID: 15140828
    • Stewart CA, Horton R, Allcock RJN, Ashurst JL, Atrazhev AM, Coggill P, et al. Complete MHC haplotype sequencing for common disease gene mapping. Genome Res. 2004; 14(6):1176-87. doi: 10. 1101/gr.2188104 PubMed PMID: 15140828.
    • (2004) Genome Res , vol.14 , Issue.6 , pp. 1176-1187
    • Stewart, C.A.1    Horton, R.2    Allcock, R.J.N.3    Ashurst, J.L.4    Atrazhev, A.M.5    Coggill, P.6
  • 20
    • 84875689644 scopus 로고    scopus 로고
    • Rapid, scalable and highly automated HLA genotyping using next-generation sequencing: A transition from research to diagnostics
    • PubMed PMID: 23557197
    • Danzer M, Niklas N, Stabentheiner S, Hofer K, Pröll J, Stückler C, et al. Rapid, scalable and highly automated HLA genotyping using next-generation sequencing: a transition from research to diagnostics. BMC genomics. 2013; 14(1):221. doi: 10.1186/1471-2164-14-221 PubMed PMID: 23557197.
    • (2013) BMC Genomics , vol.14 , Issue.1 , pp. 221
    • Danzer, M.1    Niklas, N.2    Stabentheiner, S.3    Hofer, K.4    Pröll, J.5    Stückler, C.6
  • 21
    • 84873578476 scopus 로고    scopus 로고
    • High throughput HLA genotyping using 454 sequencing and the Fluidigm Access Array system for simplified amplicon library preparation
    • PubMedPMID: 23398507
    • Moonsamy PV, Williams T, Bonella P, Holcomb CL, Höglund BN, Hillman G, et al. High throughput HLA genotyping using 454 sequencing and the Fluidigm Access Array system for simplified amplicon library preparation. Tissue Antigens. 2013; 81(3):141-9. doi: 10.1111/tan.12071 PubMed PMID: 23398507.
    • (2013) Tissue Antigens , vol.81 , Issue.3 , pp. 141-149
    • Moonsamy, P.V.1    Williams, T.2    Bonella, P.3    Holcomb, C.L.4    Höglund, B.N.5    Hillman, G.6
  • 22
    • 77956618378 scopus 로고    scopus 로고
    • Next-generation sequencing: The solution for high-resolution, unambiguous human leukocyte antigen typing
    • PubMedPMID: 20603174
    • Lind C, Ferriola D, Mackiewicz K, Heron S, Rogers M, Slavich L, et al. Next-generation sequencing: the solution for high-resolution, unambiguous human leukocyte antigen typing. Human immunology. 2010; 71(10):1033-42. doi: 10.1016/j.humimm.2010.06.016 PubMed PMID: 20603174.
    • (2010) Human Immunology , vol.71 , Issue.10 , pp. 1033-1042
    • Lind, C.1    Ferriola, D.2    Mackiewicz, K.3    Heron, S.4    Rogers, M.5    Slavich, L.6
  • 23
    • 84873708504 scopus 로고    scopus 로고
    • Filling the gaps-The generation of full genomic sequences for 15 common and well-documented HLA class i alleles using next-generation sequencing technology
    • PubMedPMID: 23246585
    • Lind C, Ferriola D, Mackiewicz K, Sasson A, Monos D. Filling the gaps-The generation of full genomic sequences for 15 common and well-documented HLA class I alleles using next-generation sequencing technology. Human immunology. 2012. doi: 10.1016/j.humimm.2012.12.007 PubMed PMID: 23246585.
    • (2012) Human Immunology
    • Lind, C.1    Ferriola, D.2    Mackiewicz, K.3    Sasson, A.4    Monos, D.5
  • 24
    • 84878251175 scopus 로고    scopus 로고
    • Phase-defined complete sequencing of the HLA genes by next-generation sequencing
    • PubMedPMID: 23714642; PubMed Central PMCID: PMCPMC3671147
    • Hosomichi K, Jinam TA, Mitsunaga S, Nakaoka H, Inoue I. Phase-defined complete sequencing of the HLA genes by next-generation sequencing. BMC genomics. 2013; 14:355. doi: 10.1186/1471-2164-14-355 PubMed PMID: 23714642; PubMed Central PMCID: PMCPMC3671147.
    • (2013) BMC Genomics , vol.14 , pp. 355
    • Hosomichi, K.1    Jinam, T.A.2    Mitsunaga, S.3    Nakaoka, H.4    Inoue, I.5
  • 25
    • 37349118061 scopus 로고    scopus 로고
    • High-resolution donor-recipient HLA matching contributes to the success of unrelated donor marrow transplantation
    • PubMedPMID: 17785583
    • Lee S, Klein J, Haagenson M, Baxter-Lowe L, Confer D, Eapen M, et al. High-resolution donor-recipient HLA matching contributes to the success of unrelated donor marrow transplantation. Blood. 2007; 110 (13):4576-83. PubMed PMID: 17785583.
    • (2007) Blood , vol.110 , Issue.13 , pp. 4576-4583
    • Lee, S.1    Klein, J.2    Haagenson, M.3    Baxter-Lowe, L.4    Confer, D.5    Eapen, M.6
  • 26
    • 84864144424 scopus 로고    scopus 로고
    • A perspective on the selection of unrelated donors and cord blood units for transplantation
    • PubMedPMID: 22596257
    • Spellman SR, Eapen M, Logan BR, Mueller C, Rubinstein P, Setterholm MI, et al. A perspective on the selection of unrelated donors and cord blood units for transplantation. Blood. 2012; 120(2):259-65. doi: 10.1182/blood-2012-03-379032 PubMed PMID: 22596257.
    • (2012) Blood , vol.120 , Issue.2 , pp. 259-265
    • Spellman, S.R.1    Eapen, M.2    Logan, B.R.3    Mueller, C.4    Rubinstein, P.5    Setterholm, M.I.6
  • 27
    • 74249117356 scopus 로고    scopus 로고
    • Diverging effects of HLADPB1 matching status on outcome following unrelated donor transplantation depending on disease stage and the degree of matching for other HLA alleles
    • PubMedPMID: 19924143
    • Shaw BE, Mayor NP, Russell NH, Apperley JF, Clark RE, Cornish J, et al. Diverging effects of HLADPB1 matching status on outcome following unrelated donor transplantation depending on disease stage and the degree of matching for other HLA alleles. Leukemia: official journal of the Leukemia Society of America, Leukemia Research Fund, UK. 2010; 24(1):58-65. doi: 10.1038/leu.2009.239 PubMed PMID: 19924143.
    • (2010) Leukemia: Official Journal of the Leukemia Society of America, Leukemia Research Fund, UK , vol.24 , Issue.1 , pp. 58-65
    • Shaw, B.E.1    Mayor, N.P.2    Russell, N.H.3    Apperley, J.F.4    Clark, R.E.5    Cornish, J.6
  • 28
    • 84888267552 scopus 로고    scopus 로고
    • High resolution HLA-matching in hematopoietic stem cell transplantation: A retrospective collaborative analysis
    • Epub 2013/09/21. PubMedPMID: 24046013
    • Furst D, Muller C, Vucinic V, Bunjes D, Herr W, Gramatzki M, et al. High resolution HLA-matching in hematopoietic stem cell transplantation: a retrospective collaborative analysis. Blood. 2013. Epub 2013/09/21. doi: 10.1182/blood-2013-02-482547 PubMed PMID: 24046013.
    • (2013) Blood
    • Furst, D.1    Muller, C.2    Vucinic, V.3    Bunjes, D.4    Herr, W.5    Gramatzki, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.