메뉴 건너뛰기




Volumn 34, Issue 5, 2018, Pages 725-731

ARCS: Scaffolding genome drafts with linked reads

Author keywords

[No Author keywords available]

Indexed keywords

DNA SEQUENCE; GENOMICS; HIGH THROUGHPUT SEQUENCING; HUMAN; HUMAN GENOME; PROCEDURES; SOFTWARE;

EID: 85042930068     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btx675     Document Type: Article
Times cited : (124)

References (17)
  • 1
    • 84913548467 scopus 로고    scopus 로고
    • In vitro, long-range sequence information for de novo genome assembly via transposase contiguity
    • Adey, A. et al. (2014) In vitro, long-range sequence information for de novo genome assembly via transposase contiguity. Genome Res., 24, 2041-2049.
    • (2014) Genome Res. , vol.24 , pp. 2041-2049
    • Adey, A.1
  • 2
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul, S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
    • (1990) J. Mol. Biol. , vol.215 , pp. 403-410
    • Altschul, S.F.1
  • 3
    • 84968903135 scopus 로고    scopus 로고
    • Coming of age: Ten years of next-generation sequencing technologies
    • Goodwin, S. et al. (2016) Coming of age: ten years of next-generation sequencing technologies. Nat. Rev. Genet., 17, 333-351.
    • (2016) Nat. Rev. Genet. , vol.17 , pp. 333-351
    • Goodwin, S.1
  • 4
    • 84899091773 scopus 로고    scopus 로고
    • A comprehensive evaluation of assembly scaffolding tools
    • Hunt, M. et al. (2014) A comprehensive evaluation of assembly scaffolding tools. Genome Biol., 15, R42.
    • (2014) Genome Biol. , vol.15 , pp. R42
    • Hunt, M.1
  • 5
    • 85019165900 scopus 로고    scopus 로고
    • ABySS 2.0: Resource-efficient assembly of large genomes using a bloom filter
    • Jackman, S.D. et al. (2017) ABySS 2.0: resource-efficient assembly of large genomes using a bloom filter. Genome Res., doi: 10.1101/gr.214346.116.
    • (2017) Genome Res.
    • Jackman, S.D.1
  • 6
    • 84898654757 scopus 로고    scopus 로고
    • Whole-genome haplotyping using long reads and statistical methods
    • Kuleshov, V. et al. (2014) Whole-genome haplotyping using long reads and statistical methods. Nat. Biotechnol., 32, 261-266.
    • (2014) Nat. Biotechnol. , vol.32 , pp. 261-266
    • Kuleshov, V.1
  • 7
    • 84976499731 scopus 로고    scopus 로고
    • Genome assembly from synthetic long read clouds
    • Kuleshov, V. et al. (2016) Genome assembly from synthetic long read clouds. Bioinformatics, 32, i216-i224.
    • (2016) Bioinformatics , vol.32 , pp. i216-i224
    • Kuleshov, V.1
  • 8
    • 69649109364 scopus 로고    scopus 로고
    • Circos: An information aesthetic for comparative genomics
    • Krzywinski, M. et al. (2009) Circos: An information aesthetic for comparative genomics. Genome Res., 19, 1639-1645.
    • (2009) Genome Res. , vol.19 , pp. 1639-1645
    • Krzywinski, M.1
  • 9
    • 84940767993 scopus 로고    scopus 로고
    • BFC: Correcting Illumina sequencing errors
    • Li, H. (2015) BFC: correcting Illumina sequencing errors. Bioinformatics, 31, 2885-2887.
    • (2015) Bioinformatics , vol.31 , pp. 2885-2887
    • Li, H.1
  • 10
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li, H. and Durbin, R. (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics, 26, 589-595.
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 11
    • 84966549638 scopus 로고    scopus 로고
    • A hybrid approach for de novo human genome sequence assembly and phasing
    • Mostovoy, Y. et al. (2016) A hybrid approach for de novo human genome sequence assembly and phasing. Nat. Methods, 13, 587-590.
    • (2016) Nat. Methods , vol.13 , pp. 587-590
    • Mostovoy, Y.1
  • 12
    • 84960087088 scopus 로고    scopus 로고
    • Health and population effects of rare gene knockouts in adult humans with related parents
    • Narasimhan, V.M. et al. (2016) Health and population effects of rare gene knockouts in adult humans with related parents. Science, 352, 474-477.
    • (2016) Science , vol.352 , pp. 474-477
    • Narasimhan, V.M.1
  • 13
    • 84931077960 scopus 로고    scopus 로고
    • NxTrim: Optimized trimming of Illumina mate pair reads
    • O'connell, J. et al. (2015) NxTrim: optimized trimming of Illumina mate pair reads. Bioinformatics, 31, 2035-2037.
    • (2015) Bioinformatics , vol.31 , pp. 2035-2037
    • O'Connell, J.1
  • 14
    • 84979584495 scopus 로고    scopus 로고
    • LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads
    • Warren, R.L. et al. (2015) LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads. Gigascience, 4, 35.
    • (2015) Gigascience , vol.4 , pp. 35
    • Warren, R.L.1
  • 15
    • 85019143246 scopus 로고    scopus 로고
    • Direct determination of diploid genome sequences
    • Weisenfeld, N.I. et al. (2017) Direct determination of diploid genome sequences. Genome Res., 27, 757-767.
    • (2017) Genome Res. , vol.27 , pp. 757-767
    • Weisenfeld, N.I.1
  • 16
    • 84960894307 scopus 로고    scopus 로고
    • Haplotyping germline and cancer genomes with high-throughput linked-read sequencing
    • Zheng, G.X.Y. et al. (2016) Haplotyping germline and cancer genomes with high-throughput linked-read sequencing. Nat. Biotechnol., 34, 303-311.
    • (2016) Nat. Biotechnol. , vol.34 , pp. 303-311
    • Zheng, G.X.Y.1
  • 17
    • 84976413217 scopus 로고    scopus 로고
    • Extensive sequencing of seven human genomes to characterize benchmark reference materials
    • Zook, J.M. et al. (2016) Extensive sequencing of seven human genomes to characterize benchmark reference materials. Sci. Data, 3, 160025.
    • (2016) Sci. Data , vol.3 , pp. 160025
    • Zook, J.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.