메뉴 건너뛰기




Volumn 281, Issue , 2007, Pages 2-24

Transcriptional Regulatory Networks in Macrophages

Author keywords

FANTOM (Functional Annotation of Mouse Mammalians) project; Macrophage regulation; Mononuclear phagocyte system (MPS); Transcriptional regulatory networks in macrophages; Transcriptome data sets and macrophage transcriptional network

Indexed keywords


EID: 85052655395     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9780470062128.ch2     Document Type: Chapter
Times cited : (6)

References (48)
  • 1
    • 19344372271 scopus 로고    scopus 로고
    • Systems biology: its practice and challenges
    • Aderem A 2005 Systems biology: its practice and challenges. Cell 121:511-513.
    • (2005) Cell , vol.121 , pp. 511-513
    • Aderem, A.1
  • 2
    • 25844454011 scopus 로고    scopus 로고
    • The Toll-like receptors: analysis by forward genetic methods
    • Beutler B 2005 The Toll-like receptors: analysis by forward genetic methods. Immunogenetics 57:385-392.
    • (2005) Immunogenetics , vol.57 , pp. 385-392
    • Beutler, B.1
  • 3
    • 30344439123 scopus 로고    scopus 로고
    • Genetic analysis of innate resistance to mouse cytomegalovirus (MCMV)
    • Beutler B, Georgel P, Rutschmann S et al 2005 Genetic analysis of innate resistance to mouse cytomegalovirus (MCMV). Brief Funct Genomic Proteomic 4:203-213.
    • (2005) Brief Funct Genomic Proteomic , vol.4 , pp. 203-213
    • Beutler, B.1    Georgel, P.2    Rutschmann, S.3
  • 4
    • 24644519490 scopus 로고    scopus 로고
    • The transcriptional landscape of the mammalian genome
    • Carninci P, Kasukawa T, Katayama S et al 2005 The transcriptional landscape of the mammalian genome. Science 309:1559-1563.
    • (2005) Science , vol.309 , pp. 1559-1563
    • Carninci, P.1    Kasukawa, T.2    Katayama, S.3
  • 5
    • 33744805985 scopus 로고    scopus 로고
    • Genome-wide analysis of mammalian promoter architecture and evolution
    • Carninci P, Sandelin TA, Lenhard B et al 2006 Genome-wide analysis of mammalian promoter architecture and evolution. Nat Genet 38:626-635.
    • (2006) Nat Genet , vol.38 , pp. 626-635
    • Carninci, P.1    Sandelin, T.A.2    Lenhard, B.3
  • 6
    • 4344675053 scopus 로고    scopus 로고
    • Identifying the molecular phenotype of renal progenitor cells
    • Challen GA, Martinez G, Davis MJ et al 2004 Identifying the molecular phenotype of renal progenitor cells. J Am Soc Nephrol 15:2344-2357.
    • (2004) J Am Soc Nephrol , vol.15 , pp. 2344-2357
    • Challen, G.A.1    Martinez, G.2    Davis, M.J.3
  • 7
    • 33645002600 scopus 로고    scopus 로고
    • Temporal and spatial transcriptional programs in murine kidney development
    • Challen G, Gardiner B, Caruana G et al 2005 Temporal and spatial transcriptional programs in murine kidney development. Physiol Genomics 23:159-171.
    • (2005) Physiol Genomics , vol.23 , pp. 159-171
    • Challen, G.1    Gardiner, B.2    Caruana, G.3
  • 8
    • 0033040334 scopus 로고    scopus 로고
    • Regulation of the plasminogen activator inhibitor-2 (PAI-2) gene in murine macrophages. Demonstration of a novel pattern of responsiveness to bacterial endotoxin
    • Costelloe EO, Stacey KJ, Antalis TM, Hume DA 1999 Regulation of the plasminogen activator inhibitor-2 (PAI-2) gene in murine macrophages. Demonstration of a novel pattern of responsiveness to bacterial endotoxin. J Leukoc Biol 66:172-182.
    • (1999) J Leukoc Biol , vol.66 , pp. 172-182
    • Costelloe, E.O.1    Stacey, K.J.2    Antalis, T.M.3    Hume, D.A.4
  • 9
    • 0036092801 scopus 로고    scopus 로고
    • Targeted disruption of the mouse colony-stimulating factor 1 receptor gene results in osteopetrosis, mononuclear phagocyte deficiency, increased primitive progenitor cell frequencies, and reproductive defects
    • Dai XM, Ryan GR, Hapel AJ et al 2002 Targeted disruption of the mouse colony-stimulating factor 1 receptor gene results in osteopetrosis, mononuclear phagocyte deficiency, increased primitive progenitor cell frequencies, and reproductive defects. Blood 99:111-120.
    • (2002) Blood , vol.99 , pp. 111-120
    • Dai, X.M.1    Ryan, G.R.2    Hapel, A.J.3
  • 11
    • 0031812160 scopus 로고    scopus 로고
    • Persistent activation of mitogen-activated protein kinases p42 and p44 and ets-2 phosphorylation in response to colony-stimulating factor 1/c-fms signaling
    • Fowles LF, Martin ML, Nelsen L et al 1998 Persistent activation of mitogen-activated protein kinases p42 and p44 and ets-2 phosphorylation in response to colony-stimulating factor 1/c-fms signaling. Mol Cell Biol 18:5148-5156.
    • (1998) Mol Cell Biol , vol.18 , pp. 5148-5156
    • Fowles, L.F.1    Martin, M.L.2    Nelsen, L.3
  • 12
    • 33646468643 scopus 로고    scopus 로고
    • Apoptotic cell removal in development and tissue homeostasis
    • Henson PM, Hume DA 2006 Apoptotic cell removal in development and tissue homeostasis. Trends Immunol 27:244-250.
    • (2006) Trends Immunol , vol.27 , pp. 244-250
    • Henson, P.M.1    Hume, D.A.2
  • 13
    • 55949122825 scopus 로고    scopus 로고
    • Transcription factors that regulate macrophage development
    • Himes SR, Hume DA 2003 Transcription factors that regulate macrophage development. Handbook Exp Pharmacol 158:11-40.
    • (2003) Handbook Exp Pharmacol , vol.158 , pp. 11-40
    • Himes, S.R.1    Hume, D.A.2
  • 14
    • 0034307684 scopus 로고    scopus 로고
    • Probability in transcriptional regulation and its implications for leukocyte differentiation and inducible gene expression
    • Hume DA 2000 Probability in transcriptional regulation and its implications for leukocyte differentiation and inducible gene expression. Blood 96:2323-2328.
    • (2000) Blood , vol.96 , pp. 2323-2328
    • Hume, D.A.1
  • 15
    • 30044434256 scopus 로고    scopus 로고
    • The mononuclear phagocyte system
    • Hume DA 2006 The mononuclear phagocyte system. Curr Opin Immunol 18:49-53.
    • (2006) Curr Opin Immunol , vol.18 , pp. 49-53
    • Hume, D.A.1
  • 16
    • 0036826744 scopus 로고    scopus 로고
    • The mononuclear phagocyte system revisited
    • Hume DA, Ross IL, Himes SR et al 2002 The mononuclear phagocyte system revisited. J Leukoc Biol 72:621-627.
    • (2002) J Leukoc Biol , vol.72 , pp. 621-627
    • Hume, D.A.1    Ross, I.L.2    Himes, S.R.3
  • 17
    • 24644472515 scopus 로고    scopus 로고
    • Antisense transcription in the mammalian transcriptome
    • Katayama S, Tomaru Y, Kasukawa T et al 2005 Antisense transcription in the mammalian transcriptome. Science 309:1564-1566.
    • (2005) Science , vol.309 , pp. 1564-1566
    • Katayama, S.1    Tomaru, Y.2    Kasukawa, T.3
  • 18
    • 85052640001 scopus 로고    scopus 로고
    • Alternative splicing and expression of a mouse transcription factor repertoire
    • press
    • Kummerfeld SK, Teichmann SA 2006 Alternative splicing and expression of a mouse transcription factor repertoire. PLoS Genetics, in press.
    • (2006) PLoS Genetics
    • Kummerfeld, S.K.1    Teichmann, S.A.2
  • 19
    • 0033168250 scopus 로고    scopus 로고
    • Differentiation of the mononuclear phagocyte system during mouse embryogenesis: the role of transcription factor PU.1
    • Lichanska AM, Browne CM, Henkel GW et al 1999 Differentiation of the mononuclear phagocyte system during mouse embryogenesis: the role of transcription factor PU.1. Blood 94:127-138.
    • (1999) Blood , vol.94 , pp. 127-138
    • Lichanska, A.M.1    Browne, C.M.2    Henkel, G.W.3
  • 20
    • 0034049748 scopus 로고    scopus 로고
    • Origins and functions of phagocytes in the embryo
    • Lichanska AM, Hume DA 2000 Origins and functions of phagocytes in the embryo. Exp Hematol 28:601-611.
    • (2000) Exp Hematol , vol.28 , pp. 601-611
    • Lichanska, A.M.1    Hume, D.A.2
  • 21
    • 0035965217 scopus 로고    scopus 로고
    • Genetic and physical interactions between Microphthalmia transcription factor and PU.1 are necessary for osteoclast gene expression and differentiation
    • Luchin A, Suchting S, Merson T et al 2001 Genetic and physical interactions between Microphthalmia transcription factor and PU.1 are necessary for osteoclast gene expression and differentiation. J Biol Chem 276:36703-36710.
    • (2001) J Biol Chem , vol.276 , pp. 36703-36710
    • Luchin, A.1    Suchting, S.2    Merson, T.3
  • 22
    • 22544455619 scopus 로고    scopus 로고
    • The colony-stimulating factor 1 receptor is expressed on dendritic cells during differentiation and regulates their expansion
    • MacDonald KP, Rowe V, Bofinger HM et al 2005 The colony-stimulating factor 1 receptor is expressed on dendritic cells during differentiation and regulates their expansion. J Immunol 175:1399-1405.
    • (2005) J Immunol , vol.175 , pp. 1399-1405
    • MacDonald, K.P.1    Rowe, V.2    Bofinger, H.M.3
  • 23
    • 33645820442 scopus 로고    scopus 로고
    • Transcription in four dimensions: nuclear receptordirected initiation of gene expression
    • Metivier R, Reid G, Gannon F 2006 Transcription in four dimensions: nuclear receptordirected initiation of gene expression. EMBO Rep 7:161-167.
    • (2006) EMBO Rep , vol.7 , pp. 161-167
    • Metivier, R.1    Reid, G.2    Gannon, F.3
  • 24
    • 33646484899 scopus 로고    scopus 로고
    • Transcriptional network dynamics in macrophage activation
    • Nilsson R, Bajic V, Katayama S et al 2006 Transcriptional network dynamics in macrophage activation. Genomics 88:133-142.
    • (2006) Genomics , vol.88 , pp. 133-142
    • Nilsson, R.1    Bajic, V.2    Katayama, S.3
  • 26
    • 24144465889 scopus 로고    scopus 로고
    • Molecular determinants of crosstalk between nuclear receptors and toll-like receptors
    • Ogawa S, Lozach J, Benner C et al 2005 Molecular determinants of crosstalk between nuclear receptors and toll-like receptors. Cell 122:707-721.
    • (2005) Cell , vol.122 , pp. 707-721
    • Ogawa, S.1    Lozach, J.2    Benner, C.3
  • 27
    • 9144236198 scopus 로고    scopus 로고
    • Human protein reference database as a discovery resource for proteomics
    • Peri S, Navarro JD, Kristiansen TZ et al 2004 Human protein reference database as a discovery resource for proteomics. Nucleic Acids Res 32:D497-501.
    • (2004) Nucleic Acids Res , vol.32 , pp. D497-501
    • Peri, S.1    Navarro, J.D.2    Kristiansen, T.Z.3
  • 28
    • 0037673513 scopus 로고    scopus 로고
    • Systematic characterization of the zinc-fingercontaining proteins in the mouse transcriptome
    • Ravasi T, Huber T, Zavolan M et al 2003 Systematic characterization of the zinc-fingercontaining proteins in the mouse transcriptome. Genome Res 13:1430-1442.
    • (2003) Genome Res , vol.13 , pp. 1430-1442
    • Ravasi, T.1    Huber, T.2    Zavolan, M.3
  • 29
    • 30044434769 scopus 로고    scopus 로고
    • Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
    • Ravasi T, Suzuki H, Pang KC et al 2006 Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. Genome Res 16:11-19.
    • (2006) Genome Res , vol.16 , pp. 11-19
    • Ravasi, T.1    Suzuki, H.2    Pang, K.C.3
  • 30
    • 0033082496 scopus 로고    scopus 로고
    • TFEC is a macrophagerestricted member of the microphthalmia-TFE subfamily of basic helix-loop-helix leucine zipper transcription factors
    • Rehli M, Lichanska A, Cassady AI, Ostrowski MC, Hume DA 1999 TFEC is a macrophagerestricted member of the microphthalmia-TFE subfamily of basic helix-loop-helix leucine zipper transcription factors. J Immunol 162:1559-1565.
    • (1999) J Immunol , vol.162 , pp. 1559-1565
    • Rehli, M.1    Lichanska, A.2    Cassady, A.I.3    Ostrowski, M.C.4    Hume, D.A.5
  • 31
    • 21044457085 scopus 로고    scopus 로고
    • Transcription factor Tfec contributes to the IL-4- inducible expression of a small group of genes in mouse macrophages including the granulocyte colony-stimulating factor receptor
    • Rehli M, Sulzbacher S, Pape S et al 2005 Transcription factor Tfec contributes to the IL-4- inducible expression of a small group of genes in mouse macrophages including the granulocyte colony-stimulating factor receptor. J Immunol 174:7111-7122.
    • (2005) J Immunol , vol.174 , pp. 7111-7122
    • Rehli, M.1    Sulzbacher, S.2    Pape, S.3
  • 32
    • 2642519463 scopus 로고    scopus 로고
    • Acute myeloid leukemia induced by graded reduction of a lineage-specific transcription factor, PU.1
    • Rosenbauer F, Wagner K, Kutok JL et al 2004 Acute myeloid leukemia induced by graded reduction of a lineage-specific transcription factor, PU.1. Nat Genet 36:624-630.
    • (2004) Nat Genet , vol.36 , pp. 624-630
    • Rosenbauer, F.1    Wagner, K.2    Kutok, J.L.3
  • 33
    • 0032549567 scopus 로고    scopus 로고
    • Interaction between PU.1 and another Ets family transcription factor promotes macrophage-specific Basal transcription initiation
    • Ross IL, Yue X, Ostrowski MC, Hume DA 1998 Interaction between PU.1 and another Ets family transcription factor promotes macrophage-specific Basal transcription initiation. J Biol Chem 273:6662-6669.
    • (1998) J Biol Chem , vol.273 , pp. 6662-6669
    • Ross, I.L.1    Yue, X.2    Ostrowski, M.C.3    Hume, D.A.4
  • 34
    • 27144530248 scopus 로고    scopus 로고
    • Towards a proteome-scale map of the human proteinprotein interaction network
    • Rual JF, Venkatesan K, Hao T et al 2005 Towards a proteome-scale map of the human proteinprotein interaction network. Nature 437:1173-1178.
    • (2005) Nature , vol.437 , pp. 1173-1178
    • Rual, J.F.1    Venkatesan, K.2    Hao, T.3
  • 35
    • 0037307026 scopus 로고    scopus 로고
    • A macrophage colony-stimulating factor receptor- green fluorescent protein transgene is expressed throughout the mononuclear phagocyte system of the mouse
    • Sasmono RT, Oceandy D, Pollard JW et al 2003 A macrophage colony-stimulating factor receptor- green fluorescent protein transgene is expressed throughout the mononuclear phagocyte system of the mouse. Blood 101:1155-1563.
    • (2003) Blood , vol.101 , pp. 1155-1563
    • Sasmono, R.T.1    Oceandy, D.2    Pollard, J.W.3
  • 36
    • 0842266786 scopus 로고    scopus 로고
    • Interferon-gamma: an overview of signals, mechanisms and functions
    • Schroder K, Hertzog PJ, Ravasi T, Hume DA 2004 Interferon-gamma: an overview of signals, mechanisms and functions. J Leukoc Biol 75:163-189.
    • (2004) J Leukoc Biol , vol.75 , pp. 163-189
    • Schroder, K.1    Hertzog, P.J.2    Ravasi, T.3    Hume, D.A.4
  • 37
    • 0032715353 scopus 로고    scopus 로고
    • Bacterial/CpG DNA down-modulates colony stimulating factor-1 receptor surface expression on murine bone marrow-derived macrophages with concomitant growth arrest and factor-independent survival
    • Sester DP, Beasley SJ, Sweet MJ et al 1999 Bacterial/CpG DNA down-modulates colony stimulating factor-1 receptor surface expression on murine bone marrow-derived macrophages with concomitant growth arrest and factor-independent survival. J Immunol 163:6541-6550.
    • (1999) J Immunol , vol.163 , pp. 6541-6550
    • Sester, D.P.1    Beasley, S.J.2    Sweet, M.J.3
  • 38
    • 22644447586 scopus 로고    scopus 로고
    • LPS regulates a set of genes in primary murine macrophages by antagonising CSF-1 action
    • Sester DP, Trieu A, Brion K et al 2005 LPS regulates a set of genes in primary murine macrophages by antagonising CSF-1 action. Immunobiology 210:97-107.
    • (2005) Immunobiology , vol.210 , pp. 97-107
    • Sester, D.P.1    Trieu, A.2    Brion, K.3
  • 39
    • 0034756446 scopus 로고    scopus 로고
    • Protein-protein interaction panel using mouse full-length cDNAs
    • Suzuki H, Fukunishi Y, Kagawa I et al 2001 Protein-protein interaction panel using mouse full-length cDNAs. Genome Res 11:1758-1765.
    • (2001) Genome Res , vol.11 , pp. 1758-1765
    • Suzuki, H.1    Fukunishi, Y.2    Kagawa, I.3
  • 40
    • 0029890168 scopus 로고    scopus 로고
    • Endotoxin signal transduction in macrophages
    • Sweet MJ, Hume DA 1996 Endotoxin signal transduction in macrophages. J Leukoc Biol 60:8-26.
    • (1996) J Leukoc Biol , vol.60 , pp. 8-26
    • Sweet, M.J.1    Hume, D.A.2
  • 41
    • 0038687554 scopus 로고    scopus 로고
    • CSF-1 as a regulator of macrophage activation and immune responses
    • Sweet MJ, Hume DA 2003 CSF-1 as a regulator of macrophage activation and immune responses. Arch Immunol Ther Exp (Warsz) 51:169-177.
    • (2003) Arch Immunol Ther Exp (Warsz) , vol.51 , pp. 169-177
    • Sweet, M.J.1    Hume, D.A.2
  • 42
    • 0036645169 scopus 로고    scopus 로고
    • Transcription factor complex formation and chromatin fine structure alterations at the murine c-fms (CSF-1 receptor) locus during maturation of myeloid precursor cells
    • Tagoh H, Himes R, Clarke D et al 2002 Transcription factor complex formation and chromatin fine structure alterations at the murine c-fms (CSF-1 receptor) locus during maturation of myeloid precursor cells. Genes Dev 16:1721-1737.
    • (2002) Genes Dev , vol.16 , pp. 1721-1737
    • Tagoh, H.1    Himes, R.2    Clarke, D.3
  • 43
    • 27144507813 scopus 로고    scopus 로고
    • Regulation of gene expression: probing DNA-protein interactions in vivo and in vitro
    • Vigneault F, Guerin SL 2005 Regulation of gene expression: probing DNA-protein interactions in vivo and in vitro. Expert Rev Proteomics 2:705-718.
    • (2005) Expert Rev Proteomics , vol.2 , pp. 705-718
    • Vigneault, F.1    Guerin, S.L.2
  • 44
    • 0642367583 scopus 로고    scopus 로고
    • Genetic control of the innate immune response
    • Wells CA, Ravasi T, Faulkner GJ et al 2003a Genetic control of the innate immune response. BMC Immunol 4:5.
    • (2003) BMC Immunol , vol.4 , pp. 5
    • Wells, C.A.1    Ravasi, T.2    Faulkner, G.J.3
  • 45
    • 0038011499 scopus 로고    scopus 로고
    • Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage
    • Wells CA, Ravasi T, Sultana R et al 2003b Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage. Genome Res 13:1360-1365.
    • (2003) Genome Res , vol.13 , pp. 1360-1365
    • Wells, C.A.1    Ravasi, T.2    Sultana, R.3
  • 46
    • 22144464423 scopus 로고    scopus 로고
    • Inflammation suppressor genes: please switch out all the lights
    • Wells CA, Ravasi T, Hume DA 2005 Inflammation suppressor genes: please switch out all the lights. J Leukoc Biol 78:9-13.
    • (2005) J Leukoc Biol , vol.78 , pp. 9-13
    • Wells, C.A.1    Ravasi, T.2    Hume, D.A.3
  • 47
    • 33745023799 scopus 로고    scopus 로고
    • Alternative transcription of the toll-like receptor signalling cascade
    • Wells CA, Chalk A, Forrest A et al 2006 Alternative transcription of the toll-like receptor signalling cascade. Genome Biol 7:R10.
    • (2006) Genome Biol , vol.7 , pp. R10
    • Wells, C.A.1    Chalk, A.2    Forrest, A.3
  • 48
    • 22144464423 scopus 로고    scopus 로고
    • Inflammation suppressor genes-please turn out all the lights
    • Wells CA, Ravasi T, Hume DA 2005 Inflammation suppressor genes-please turn out all the lights. J Leukocyte Biol 78:9-13.
    • (2005) J Leukocyte Biol , vol.78 , pp. 9-13
    • Wells, C.A.1    Ravasi, T.2    Hume, D.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.