-
1
-
-
0020490833
-
Structure of the complex between lac repressor headpiece and operator DNA from measurements of the orientation relaxation and the electric dichroism
-
Porschke, D., Geisler, N., and Hillen, W., Structure of the complex between lac repressor headpiece and operator DNA from measurements of the orientation relaxation and the electric dichroism, Nucleic Acids Res., 10, 3791, 1982.
-
(1982)
Nucleic Acids Res
, vol.10
, pp. 3791
-
-
Porschke, D.1
Geisler, N.2
Hillen, W.3
-
2
-
-
0031837979
-
Time-resolved analysis of macromolecular structures during reactions by stoppedflow electrooptics
-
Porschke, D., Time-resolved analysis of macromolecular structures during reactions by stoppedflow electrooptics, Biophys. J., 75, 528, 1998.
-
(1998)
Biophys. J
, vol.75
, pp. 528
-
-
Porschke, D.1
-
3
-
-
0022187785
-
Effects of electric fields on biopolymers
-
Porschke, D., Effects of electric fields on biopolymers, Annu. Rev. Phys. Chem., 36, 159, 1985.
-
(1985)
Annu. Rev. Phys. Chem
, vol.36
, pp. 159
-
-
Porschke, D.1
-
4
-
-
0003421689
-
-
Clarendon Press, Oxford
-
Fredericq, E. and Houssier, C., Electric Dichroism and Electric Birefringence, Monographs on physical biochemistry, Clarendon Press, Oxford, 1973.
-
(1973)
Electric Dichroism and Electric Birefringence, Monographs on physical biochemistry
-
-
Fredericq, E.1
Houssier, C.2
-
5
-
-
0004141962
-
-
Academic Press,London
-
Stoylov, S.P.,Colloid Electro-Optics:Theory,Techniques,Applications,Academic Press,London, 1991.
-
(1991)
Colloid Electro-Optics:Theory,Techniques,Applications
-
-
Stoylov, S.P.1
-
6
-
-
0020130381
-
Electric properties and structure of DNA restriction fragments from measurements of the electric dichroism
-
Diekmann, S., et al., Electric properties and structure of DNA restriction fragments from measurements of the electric dichroism, Biophys. Chem., 15, 157, 1982.
-
(1982)
Biophys. Chem
, vol.15
, pp. 157
-
-
Diekmann, S.1
-
7
-
-
0023442745
-
Electric optical and hydrodynamic parameters of lac repressor from measurements of the electric dichroism-high permanent dipole-moment associated with the protein
-
Porschke, D., Electric, optical and hydrodynamic parameters of lac repressor from measurements of the electric dichroism-high permanent dipole-moment associated with the protein, Biophys. Chem., 28, 137, 1987.
-
(1987)
Biophys. Chem
, vol.28
, pp. 137
-
-
Porschke, D.1
-
8
-
-
0024788820
-
The nature of protein dipole-moments-experimental and calculated permanent dipole of a-chymotrypsin
-
Antosiewicz, J.M. and Porschke, D., The nature of protein dipole-moments-experimental and calculated permanent dipole of a-chymotrypsin, Biochemistry, 28, 10072, 1989.
-
(1989)
Biochemistry
, vol.28
, pp. 10072
-
-
Antosiewicz, J.M.1
Porschke, D.2
-
9
-
-
0342502240
-
Electrooptical analysis of a-chymotrypsin at physiological salt concentration
-
Schonknecht, T. and Porschke, D., Electrooptical analysis of a-chymotrypsin at physiological salt concentration, Biophys. Chem., 58, 21, 1996.
-
(1996)
Biophys. Chem
, vol.58
, pp. 21
-
-
Schonknecht, T.1
Porschke, D.2
-
10
-
-
0029769803
-
Electrostatics and electrodynamics of bacteriorhodopsin
-
Porschke, D., Electrostatics and electrodynamics of bacteriorhodopsin, Biophys. J., 71, 3381, 1996.
-
(1996)
Biophys. J
, vol.71
, pp. 3381
-
-
Porschke, D.1
-
11
-
-
0000125188
-
Relaxation methods
-
S. Friess, E. Lewis, and A.Weissberger, Eds., of Technique of Organic Chemistry, Interscience, New York
-
Eigen, M. and DeMaeyer, L., Relaxation methods, in Investigation of Rates and Mechanisms of Reactions, S. Friess, E. Lewis, and A.Weissberger, Eds., Vol. VIII, Part II of Technique of Organic Chemistry, Interscience, New York, 1963, pp. 895-1054.
-
(1963)
Investigation of Rates and Mechanisms of Reactions
, vol.8
, pp. 895-1054
-
-
Eigen, M.1
DeMaeyer, L.2
-
12
-
-
9244229410
-
Entwicklung einer E-Feldsprung-Apparatur mit optischer Detektion und ihre Anwendung auf die Assoziation amphiphiler Elektrolyte
-
Ph.D. thesis, Braunschweig
-
Grünhagen, H.H., Entwicklung einer E-Feldsprung-Apparatur mit optischer Detektion und ihre Anwendung auf die Assoziation amphiphiler Elektrolyte, Ph.D. thesis, Braunschweig, 1974.
-
(1974)
-
-
Grünhagen, H.H.1
-
13
-
-
0015159414
-
Nanosecond temperature-jump apparatus
-
Hoffman, G.W., Nanosecond temperature-jump apparatus, Rev. Sci. Instrum., 42, 1643, 1971.
-
(1971)
Rev. Sci. Instrum
, vol.42
, pp. 1643
-
-
Hoffman, G.W.1
-
14
-
-
0017020199
-
Cable temperature jump apparatus with improved sensitivity and time resolution
-
Porschke, D., Cable temperature jump apparatus with improved sensitivity and time resolution, Rev. Sci. Instrum., 47, 1363, 1976.
-
(1976)
Rev. Sci. Instrum
, vol.47
, pp. 1363
-
-
Porschke, D.1
-
15
-
-
0001286652
-
An electric-field jump apparatus with ns time resolution for electrooptical measurements at physiological salt concentrations
-
Porschke, D. and Obst, A., An electric-field jump apparatus with ns time resolution for electrooptical measurements at physiological salt concentrations, Rev. Sci. Instrum., 62, 818, 1991.
-
(1991)
Rev. Sci. Instrum
, vol.62
, pp. 818
-
-
Porschke, D.1
Obst, A.2
-
16
-
-
0029112706
-
Electric parameters ofNa+/K+-Atpase by measurements of the fluorescence-detected electric dichroism
-
Porschke, D. and Grell, E., Electric parameters ofNa+/K+-Atpase by measurements of the fluorescence-detected electric dichroism, Biochim. Biophys. Acta Bioen., 1231, 181, 1995.
-
(1995)
Biochim. Biophys. Acta Bioen
, vol.1231
, pp. 181
-
-
Porschke, D.1
Grell, E.2
-
17
-
-
0038051825
-
Dipole reversal in bacteriorhodopsin and separation of dipole components
-
Wang, G.Y. and Porschke, D., Dipole reversal in bacteriorhodopsin and separation of dipole components, J. Phys. Chem. B, 107, 4632, 2003.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 4632
-
-
Wang, G.Y.1
Porschke, D.2
-
18
-
-
33646937708
-
Analysis of chemical and physical relaxation processes of polyelectrolytes by electric field pulse methods: A comparison of critical comments with facts
-
Porschke, D., Analysis of chemical and physical relaxation processes of polyelectrolytes by electric field pulse methods: A comparison of critical comments with facts, Ber. Bunsengesell. Phys. Chem., 100, 715, 1996.
-
(1996)
Ber. Bunsengesell. Phys. Chem
, vol.100
, pp. 715
-
-
Porschke, D.1
-
19
-
-
0020161682
-
Orientation relaxation of DNA restriction fragments and the internal mobility of the double helix
-
Diekmann, S., et al., Orientation relaxation of DNA restriction fragments and the internal mobility of the double helix, Biophys. Chem., 15, 263, 1982.
-
(1982)
Biophys. Chem
, vol.15
, pp. 263
-
-
Diekmann, S.1
-
20
-
-
0021870990
-
The conformation of single stranded oligonucleotides and of oligonucleotide-oligopeptide complexes from their rotation relaxation in the nanosecond time range
-
Porschke, D. and Jung, M., The conformation of single stranded oligonucleotides and of oligonucleotide-oligopeptide complexes from their rotation relaxation in the nanosecond time range, J. Biomol. Struct. Dyn., 2, 1173, 1985.
-
(1985)
J. Biomol. Struct. Dyn
, vol.2
, pp. 1173
-
-
Porschke, D.1
Jung, M.2
-
21
-
-
0028282252
-
Deconvolution of electrooptical data in the frequency-domain- relaxation processes of DNA from rigid rods to coiled spheres
-
Porschke, D. and Nolte, G., Deconvolution of electrooptical data in the frequency-domain- relaxation processes of DNA from rigid rods to coiled spheres, Macromolecules, 27, 590, 1994.
-
(1994)
Macromolecules
, vol.27
, pp. 590
-
-
Porschke, D.1
Nolte, G.2
-
22
-
-
0041592685
-
Strong bending of purple membranes in the M-state
-
Porschke, D., Strong bending of purple membranes in the M-state, J. Mol. Biol., 331, 667, 2003.
-
(2003)
J. Mol. Biol
, vol.331
, pp. 667
-
-
Porschke, D.1
-
23
-
-
0034632864
-
Molecular mechanism of vectorial proton translocation by bacteriorhodopsin
-
Subramaniam, S. and Henderson, R., Molecular mechanism of vectorial proton translocation by bacteriorhodopsin, Nature, 406, 653, 2000.
-
(2000)
Nature
, vol.406
, pp. 653
-
-
Subramaniam, S.1
Henderson, R.2
-
24
-
-
0038111667
-
Bacteriorhodopsin-the movie
-
Kühlbrandt, W., Bacteriorhodopsin-the movie, Nature, 406, 569, 2000.
-
(2000)
Nature
, vol.406
, pp. 569
-
-
Kühlbrandt, W.1
-
25
-
-
0041608233
-
Molecular electro-optics, in Protein-Ligand Interactions: Hydrodynamics and Calorimetry
-
S.E. Harding and B.Z. Chowdhry, Eds., Oxford University Press, Oxford
-
Porschke, D., Molecular electro-optics, in Protein-Ligand Interactions: Hydrodynamics and Calorimetry, S.E. Harding and B.Z. Chowdhry, Eds., Oxford University Press, Oxford, 2001, pp. 197-221.
-
(2001)
, pp. 197-221
-
-
Porschke, D.1
-
26
-
-
33947480381
-
Electric properties of macromolecules. IV. Determination of electric and optical parameters from saturation of electric birefringence in solutions
-
Okonski, C.T., Yoshioka, K., and Orttung, W.H., Electric properties of macromolecules. IV. Determination of electric and optical parameters from saturation of electric birefringence in solutions, J. Phys. Chem., 63, 1558, 1959.
-
(1959)
J. Phys. Chem
, vol.63
, pp. 1558
-
-
Okonski, C.T.1
Yoshioka, K.2
Orttung, W.H.3
-
27
-
-
0001603989
-
Transient electric dichroism of rod-like DNAmolecules
-
Hogan, M., Dattagupta, N., and Crothers, D.M., Transient electric dichroism of rod-like DNAmolecules, Proc. Natl. Acad. Sci. USA, 75, 195, 1978.
-
(1978)
Proc. Natl. Acad. Sci. USA
, vol.75
, pp. 195
-
-
Hogan, M.1
Dattagupta, N.2
Crothers, D.M.3
-
28
-
-
0011257308
-
Brownian dynamics simulation of electrooptical transients for solutions of rigid macromolecules
-
Antosiewicz, J.M., Grycuk, T., and Porschke, D., Brownian dynamics simulation of electrooptical transients for solutions of rigid macromolecules, J. Chem. Phys., 95, 1354, 1991.
-
(1991)
J. Chem. Phys
, vol.95
, pp. 1354
-
-
Antosiewicz, J.M.1
Grycuk, T.2
Porschke, D.3
-
29
-
-
0008217485
-
Brownian dynamics simulation of electrooptical transients for complex macrodipoles
-
Antosiewicz, J.M. and Porschke, D., Brownian dynamics simulation of electrooptical transients for complex macrodipoles, J. Phys. Chem., 97, 2767, 1993.
-
(1993)
J. Phys. Chem
, vol.97
, pp. 2767
-
-
Antosiewicz, J.M.1
Porschke, D.2
-
30
-
-
36849142014
-
Rotational diffusion constant of a cylindrical particle
-
Broersma, S., Rotational diffusion constant of a cylindrical particle, J. Chem. Phys., 32, 1626, 1960.
-
(1960)
J. Chem. Phys
, vol.32
, pp. 1626
-
-
Broersma, S.1
-
31
-
-
4243642135
-
Comparison of theories for the translational and rotational diffusion-coefficients of rod-like macromolecules-application to short DNA fragments
-
Tirado, M.M., Martinez, C.L., and Garcia de la Torre, J.G., Comparison of theories for the translational and rotational diffusion-coefficients of rod-like macromolecules-application to short DNA fragments, J. Chem. Phys., 81, 2047, 1984.
-
(1984)
J. Chem. Phys
, vol.81
, pp. 2047
-
-
Tirado, M.M.1
Martinez, C.L.2
Garcia de la Torre, J.G.3
-
32
-
-
0033954256
-
The Protein Data Bank
-
Berman, H.M., et al., The Protein Data Bank, Nucleic Acids Res., 28, 235, 2000.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235
-
-
Berman, H.M.1
-
33
-
-
0030003578
-
NAMOT2-A redesigned nucleic acid modeling tool: construction of non-canonical DNA structures
-
Carter, E.S. and Tung, C.S., NAMOT2-A redesigned nucleic acid modeling tool: construction of non-canonical DNA structures, Comp. Appl. Biosci., 12, 25, 1996.
-
(1996)
Comp. Appl. Biosci
, vol.12
, pp. 25
-
-
Carter, E.S.1
Tung, C.S.2
-
34
-
-
0344154480
-
Anisotropie der Lichtabsorption gelster Molekle im elektrischen Feld
-
Kuhn, W., Dührkop, H., and Martin, H., Anisotropie der Lichtabsorption gelster Molekle im elektrischen Feld, Z. Phys. Chem., B45, 121, 1939.
-
(1939)
Z. Phys. Chem
, vol.B45
, pp. 121
-
-
Kuhn, W.1
Dührkop, H.2
Martin, H.3
-
35
-
-
0017698551
-
Dichroic tensor of flexible helices
-
Wilson, R.W. and Schellman, J.A., Dichroic tensor of flexible helices, Biopolymers, 16, 2143, 1977.
-
(1977)
Biopolymers
, vol.16
, pp. 2143
-
-
Wilson, R.W.1
Schellman, J.A.2
-
36
-
-
0021403295
-
Matrix-method calculation of linear and circular-dichroism spectra of nucleic-acids and polynucleotides
-
Rizzo, V. and Schellman, J.A., Matrix-method calculation of linear and circular-dichroism spectra of nucleic-acids and polynucleotides, Biopolymers, 23, 435, 1984.
-
(1984)
Biopolymers
, vol.23
, pp. 435
-
-
Rizzo, V.1
Schellman, J.A.2
-
37
-
-
84984084960
-
Absorption spectra of nucleotides polynucleotides, and nucleic acids in the far ultraviolet
-
Voet, D., et al., Absorption spectra of nucleotides, polynucleotides, and nucleic acids in the far ultraviolet, Biopolymers, 1, 193, 1963.
-
(1963)
Biopolymers
, vol.1
, pp. 193
-
-
Voet, D.1
-
38
-
-
0017595418
-
Circular-dichroism calculations for double-stranded polynucleotides of repeating sequence
-
Cech, C.L. and Tinoco, I., Circular-dichroism calculations for double-stranded polynucleotides of repeating sequence, Biopolymers, 16, 43, 1977.
-
(1977)
Biopolymers
, vol.16
, pp. 43
-
-
Cech, C.L.1
Tinoco, I.2
-
39
-
-
84943917679
-
Applications of linear dichroism spectroscopy
-
Norden, B., Applications of linear dichroism spectroscopy, App. Spectrosc. Rev., 14, 157, 1978.
-
(1978)
App. Spectrosc. Rev
, vol.14
, pp. 157
-
-
Norden, B.1
-
40
-
-
2342651908
-
Dichroic spectra of biopolymers oriented by flow
-
Wada, A., Dichroic spectra of biopolymers oriented by flow, Appl. Spectrosc. Rev., 6, 1, 1972.
-
(1972)
Appl. Spectrosc. Rev
, vol.6
, pp. 1
-
-
Wada, A.1
-
41
-
-
0011205264
-
Structure of an alternating-B DNA helix and its relationship to A-tract DNA
-
Yoon, C., et al., Structure of an alternating-B DNA helix and its relationship to A-tract DNA, Proc. Natl. Acad. Sci. USA, 85, 6332, 1988.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 6332
-
-
Yoon, C.1
-
42
-
-
0019558179
-
Structure of a B-DNA dodecamer-conformation and dynamics
-
Drew, H.R., et al., Structure of a B-DNA dodecamer-conformation and dynamics, Proc. Natl. Acad. Sci. USA, 78, 2179, 1981.
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 2179
-
-
Drew, H.R.1
-
43
-
-
0016778737
-
Atomic coordinates for yeast phenylalanine transfer-RNA
-
Ladner, J.E., et al., Atomic coordinates for yeast phenylalanine transfer-RNA, Nucleic Acids Res., 2, 1629, 1975.
-
(1975)
Nucleic Acids Res
, vol.2
, pp. 1629
-
-
Ladner, J.E.1
-
44
-
-
0000581846
-
Polarized absorption-spectra of crystals of indole and its related compounds
-
Yamamoto, Y. and Tanaka, J., Polarized absorption-spectra of crystals of indole and its related compounds, Bull. Chem. Soc. Jpn., 45, 1362, 1972.
-
(1972)
Bull. Chem. Soc. Jpn
, vol.45
, pp. 1362
-
-
Yamamoto, Y.1
Tanaka, J.2
-
46
-
-
85022818235
-
Effect of sigma-2 interaction on electronic-structure of molecules in excited-states. 2. Oscillator strength
-
Maki, I., Kitaura, K., and Nishimoto, K., Effect of sigma-2 interaction on electronic-structure of molecules in excited-states. 2. Oscillator strength, Bull. Chem. Soc. Jpn., 51, 401, 1978.
-
(1978)
Bull. Chem. Soc. Jpn
, vol.51
, pp. 401
-
-
Maki, I.1
Kitaura, K.2
Nishimoto, K.3
-
47
-
-
36549091193
-
The rotationally resolved electronic-spectrum of indole in the gasphase
-
Philips, L.A. and Levy, D.H., The rotationally resolved electronic-spectrum of indole in the gasphase, J. Chem. Phys., 85, 1327, 1986.
-
(1986)
J. Chem. Phys
, vol.85
, pp. 1327
-
-
Philips, L.A.1
Levy, D.H.2
-
48
-
-
0023953148
-
Turn of promotor DNA by camp receptor protein characterized by bead model simulation of rotational diffusion
-
Antosiewicz, J.M. and Porschke, D., Turn of promotor DNA by camp receptor protein characterized by bead model simulation of rotational diffusion, J. Biomol. Struct. Dyn., 5, 819, 1988.
-
(1988)
J. Biomol. Struct. Dyn
, vol.5
, pp. 819
-
-
Antosiewicz, J.M.1
Porschke, D.2
-
49
-
-
0028851189
-
Electrostatics of hemoglobins from measurements of the electric dichroism and computer-simulations
-
Antosiewicz, J.M. and Porschke, D., Electrostatics of hemoglobins from measurements of the electric dichroism and computer-simulations, Biophys. J., 68, 655, 1995.
-
(1995)
Biophys. J
, vol.68
, pp. 655
-
-
Antosiewicz, J.M.1
Porschke, D.2
-
50
-
-
0343387160
-
Electric polarizability of polar ions
-
Mysels, K.J., Electric polarizability of polar ions, J. Chem. Phys., 21, 201, 1953.
-
(1953)
J. Chem. Phys
, vol.21
, pp. 201
-
-
Mysels, K.J.1
-
51
-
-
0024241856
-
An unusual electrooptical effect observed for DNA fragments and its apparent relation to a permanent electric moment associated with bent DNA
-
Antosiewicz, J.M. and Porschke, D., An unusual electrooptical effect observed for DNA fragments and its apparent relation to a permanent electric moment associated with bent DNA, Biophys. Chem., 33, 19, 1989.
-
(1989)
Biophys. Chem
, vol.33
, pp. 19
-
-
Antosiewicz, J.M.1
Porschke, D.2
-
52
-
-
0030059821
-
Direct measurement of the aspartic acid 26 pKa for reduced Escherichia coli thioredoxin by C-13 NMR
-
Jeng, M.F. and Dyson, H.J., Direct measurement of the aspartic acid 26 pKa for reduced Escherichia coli thioredoxin by C-13 NMR, Biochemistry, 35, 1, 1996.
-
(1996)
Biochemistry
, vol.35
, pp. 1
-
-
Jeng, M.F.1
Dyson, H.J.2
-
53
-
-
0025718561
-
The conserved buried aspartic-acid in oxidized Escherichia-coli thioredoxin has a pKa of 7.5-Its titration produces a related shift in global stability
-
Langsetmo, K., Fuchs, J.A., and Woodward, C., The conserved, buried aspartic-acid in oxidized Escherichia-coli thioredoxin has a pKa of 7.5-Its titration produces a related shift in global stability, Biochemistry, 30, 7603, 1991.
-
(1991)
Biochemistry
, vol.30
, pp. 7603
-
-
Langsetmo, K.1
Fuchs, J.A.2
Woodward, C.3
-
54
-
-
0029116114
-
Aspartic-acid 26 in reduced Escherichia-coli thioredoxin has a pKa greaterthan-9
-
Wilson, N.A., et al., Aspartic-acid 26 in reduced Escherichia-coli thioredoxin has a pKa greaterthan-9, Biochemistry, 34, 8931, 1995.
-
(1995)
Biochemistry
, vol.34
, pp. 8931
-
-
Wilson, N.A.1
-
55
-
-
0027383705
-
Active-site labeling of the Yersinia protein-tyrosine-phosphatase- the determination of the pKa of the active-site cysteine and the function of the conserved histidine-402
-
Zhang, Z.Y. and Dixon, J.E., Active-site labeling of the Yersinia protein-tyrosine-phosphatase- the determination of the pKa of the active-site cysteine and the function of the conserved histidine-402, Biochemistry, 32, 9340, 1993.
-
(1993)
Biochemistry
, vol.32
, pp. 9340
-
-
Zhang, Z.Y.1
Dixon, J.E.2
-
56
-
-
0019889036
-
Calculations of enzymatic-reactions-calculations of pKa proton-transfer reactions, and general acid catalysis reactions in enzymes
-
Warshel, A., Calculations of enzymatic-reactions-calculations of pKa, proton-transfer reactions, and general acid catalysis reactions in enzymes, Biochemistry, 20, 3167, 1981.
-
(1981)
Biochemistry
, vol.20
, pp. 3167
-
-
Warshel, A.1
-
57
-
-
33947468892
-
Theory of protein titration curves. I. General equations for impenetrable spheres
-
Tanford, C. and Kirkwood, J.G., Theory of protein titration curves. I. General equations for impenetrable spheres, J. Am. Chem. Soc., 79, 5333, 1957.
-
(1957)
J. Am. Chem. Soc
, vol.79
, pp. 5333
-
-
Tanford, C.1
Kirkwood, J.G.2
-
58
-
-
0028305457
-
Prediction of pH-dependent properties of proteins
-
Antosiewicz, J.M., McCammon, J.A., and Gilson, M.K., Prediction of pH-dependent properties of proteins, J. Mol. Biol., 238, 415, 1994.
-
(1994)
J. Mol. Biol
, vol.238
, pp. 415
-
-
Antosiewicz, J.M.1
McCammon, J.A.2
Gilson, M.K.3
-
59
-
-
0000945505
-
Computing ionization states of proteins with a detailed charge model
-
Antosiewicz, J.M., et al., Computing ionization states of proteins with a detailed charge model, J. Comput. Chem., 17, 1633, 1996.
-
(1996)
J. Comput. Chem
, vol.17
, pp. 1633
-
-
Antosiewicz, J.M.1
-
60
-
-
0025197061
-
pKa's of ionizable groups in proteins-atomic detail from a continuum electrostatic model
-
Bashford, D. and Karplus, M., pKa's of ionizable groups in proteins-atomic detail from a continuum electrostatic model, Biochemistry, 29, 10219, 1990.
-
(1990)
Biochemistry
, vol.29
, pp. 10219
-
-
Bashford, D.1
Karplus, M.2
-
61
-
-
0026612756
-
Electrostatic calculations of the pKa values of ionizable groups in bacteriorhodopsin
-
Bashford, D. and Gerwert, K., Electrostatic calculations of the pKa values of ionizable groups in bacteriorhodopsin, J. Mol. Biol., 224, 473, 1992.
-
(1992)
J. Mol. Biol
, vol.224
, pp. 473
-
-
Bashford, D.1
Gerwert, K.2
-
62
-
-
0027563464
-
On the calculation of pKa's in proteins
-
Yang, A.S., et al., On the calculation of pKa's in proteins, Proteins: Struct. Funct. Genet., 15, 252, 1993.
-
(1993)
Proteins: Struct. Funct. Genet
, vol.15
, pp. 252
-
-
Yang, A.S.1
-
63
-
-
33748593093
-
Improving the continuum dielectric approach to calculating pKa's of ionizable groups in proteins
-
Demchuk, E. and Wade, R.C., Improving the continuum dielectric approach to calculating pKa's of ionizable groups in proteins, J. Phys. Chem., 100, 17373, 1996.
-
(1996)
J. Phys. Chem
, vol.100
, pp. 17373
-
-
Demchuk, E.1
Wade, R.C.2
-
64
-
-
0030945495
-
Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties
-
Alexov, E.G. and Gunner, M.R., Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties, Biophys. J., 72, 2075, 1997.
-
(1997)
Biophys. J
, vol.72
, pp. 2075
-
-
Alexov, E.G.1
Gunner, M.R.2
-
65
-
-
0031719963
-
Calculation of protonation patterns in proteins with structural relaxation and molecular ensembles-application to the photosynthetic reaction center
-
Rabenstein, B., Ullmann, G.M., and Knapp, E.W., Calculation of protonation patterns in proteins with structural relaxation and molecular ensembles-application to the photosynthetic reaction center, Eur. Biophys. J. Biophys. Lett., 27, 626, 1998.
-
(1998)
Eur. Biophys. J. Biophys. Lett
, vol.27
, pp. 626
-
-
Rabenstein, B.1
Ullmann, G.M.2
Knapp, E.W.3
-
66
-
-
0017429069
-
Areas, volumes, packing, and protein-structure
-
Richards, F.M., Areas, volumes, packing, and protein-structure, Annu. Rev. Biophys. Bioeng., 6, 151, 1977.
-
(1977)
Annu. Rev. Biophys. Bioeng
, vol.6
, pp. 151
-
-
Richards, F.M.1
-
67
-
-
0020475509
-
Calculation of the electric-potential in the active-site cleft due to alpha-helix dipoles
-
Warwicker, J. and Watson, H.C., Calculation of the electric-potential in the active-site cleft due to alpha-helix dipoles, J. Mol. Biol., 157, 671, 1982.
-
(1982)
J. Mol. Biol
, vol.157
, pp. 671
-
-
Warwicker, J.1
Watson, H.C.2
-
68
-
-
0022964504
-
Focusing of electric fields in the active site of Cu-Zn superoxide dismutase: Effects of ionic strength and amino-acid modification
-
Klapper, I., et al., Focusing of electric fields in the active site of Cu-Zn superoxide dismutase: Effects of ionic strength and amino-acid modification, Proteins: Struct. Funct. Genet., 1, 47, 1986.
-
(1986)
Proteins: Struct. Funct. Genet
, vol.1
, pp. 47
-
-
Klapper, I.1
-
69
-
-
5744249209
-
Equation of state calculations by fast computing machines
-
Metropolis, N., et al., Equation of state calculations by fast computing machines, J. Chem. Phys., 21, 1087, 1953.
-
(1953)
J. Chem. Phys
, vol.21
, pp. 1087
-
-
Metropolis, N.1
-
70
-
-
0026095641
-
Protonation of interacting residues in a protein by a Monte-Carlo Method- application to lysozyme and the photosynthetic reaction center of Rhodobacter-sphaeroides
-
Beroza, P., et al., Protonation of interacting residues in a protein by a Monte-Carlo Method- application to lysozyme and the photosynthetic reaction center of Rhodobacter-sphaeroides, Proc. Natl. Acad. Sci. USA, 88, 5804, 1991.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 5804
-
-
Beroza, P.1
-
71
-
-
0029100915
-
Computation of the dipole-moments of proteins
-
Antosiewicz, J.M. Computation of the dipole-moments of proteins, Biophys. J., 69, 1344, 1995.
-
(1995)
Biophys. J
, vol.69
, pp. 1344
-
-
Antosiewicz, J.M.1
-
72
-
-
33751499830
-
Multiple-site titration curves of proteins-an analysis of exact and approximate methods for their calculation
-
Bashford, D. and Karplus, M., Multiple-site titration curves of proteins-an analysis of exact and approximate methods for their calculation, J. Phys. Chem., 95, 9556, 1991.
-
(1991)
J. Phys. Chem
, vol.95
, pp. 9556
-
-
Bashford, D.1
Karplus, M.2
-
73
-
-
0027477251
-
Multiple-site titration and molecular modeling-2 rapid methods for computing energies and forces for ionizable groups in proteins
-
Gilson, M.K., Multiple-site titration and molecular modeling-2 rapid methods for computing energies and forces for ionizable groups in proteins, Proteins: Struct. Funct. Genet., 15, 266, 1993.
-
(1993)
Proteins: Struct. Funct. Genet
, vol.15
, pp. 266
-
-
Gilson, M.K.1
-
74
-
-
0026124585
-
Electrostatics and diffusion of molecules in solution-simulations with the University of Houston Brownian Dynamics program
-
Davis, M.E., et al., Electrostatics and diffusion of molecules in solution-simulations with the University of Houston Brownian Dynamics program, Comput. Phys. Commun., 62, 187, 1991.
-
(1991)
Comput. Phys. Commun
, vol.62
, pp. 187
-
-
Davis, M.E.1
-
75
-
-
0029633152
-
Electrostatics and diffusion of molecules in solution-simulations with the University of Houston Brownian Dynamics program
-
Madura, J.D., et al., Electrostatics and diffusion of molecules in solution-simulations with the University of Houston Brownian Dynamics program, Comput. Phys. Commun., 91, 57, 1995.
-
(1995)
Comput. Phys. Commun
, vol.91
, pp. 57
-
-
Madura, J.D.1
-
76
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell, A.D., et al., All-atom empirical potential for molecular modeling and dynamics studies of proteins, J. Phys. Chem. B, 102, 3586, 1998.
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586
-
-
MacKerell, A.D.1
-
77
-
-
0001461682
-
Examination of titration behaviour
-
C. Hirs, Ed., volume XI of Methods in Enzymology, Academic Press, New York
-
Nozaki, Y. and Tanford, C., Examination of titration behaviour, in Enzyme Structure, C. Hirs, Ed., volume XI of Methods in Enzymology, Academic Press, New York, 1967, pp. 715-734.
-
(1967)
Enzyme Structure
, pp. 715-734
-
-
Nozaki, Y.1
Tanford, C.2
-
78
-
-
0004155427
-
-
Freeman, New York
-
Stryer, L., Biochemistry, 4th ed., Freeman, New York, 1995.
-
(1995)
Biochemistry
-
-
Stryer, L.1
-
79
-
-
0018749496
-
Electrostatic effects in hemoglobin-hydrogen-ion equilibria in human deoxyhemoglobin and oxyhemoglobin-A
-
Matthew, J.B., Hanania, G.I.H., and Gurd, F.R.N., Electrostatic effects in hemoglobin-hydrogen-ion equilibria in human deoxyhemoglobin and oxyhemoglobin-A, Biochemistry, 18, 1919, 1979.
-
(1979)
Biochemistry
, vol.18
, pp. 1919
-
-
Matthew, J.B.1
Hanania, G.I.H.2
Gurd, F.R.N.3
-
80
-
-
84977586068
-
Uber die von der molekularkinetischen Theorie der Wrme geforderte Bewegung von in ruhenden Flssigkeiten suspendierten Teilchen
-
Einstein, A., Uber die von der molekularkinetischen Theorie der Wrme geforderte Bewegung von in ruhenden Flssigkeiten suspendierten Teilchen, Ann. Physik, 17, 549, 1905.
-
(1905)
Ann. Physik
, vol.17
, pp. 549
-
-
Einstein, A.1
-
81
-
-
5244227523
-
Coupling between translational and rotational Brownian motions of rigid particles of arbitrary shape. I. Helicoidally isotropic particles
-
Brenner, H., Coupling between translational and rotational Brownian motions of rigid particles of arbitrary shape. I. Helicoidally isotropic particles, J. Coll. Sci., 20, 104, 1965.
-
(1965)
J. Coll. Sci
, vol.20
, pp. 104
-
-
Brenner, H.1
-
82
-
-
0003502177
-
Low Reynolds number hydrodynamics. With special applications to particulate media, Mechanics of fluids and transport processes
-
ed edition, Noordhoff International Publishing, Leyden
-
Happel, J. and Brenner, H., Low Reynolds number hydrodynamics. With special applications to particulate media, Mechanics of fluids and transport processes, 2., rev. ed edition, Noordhoff International Publishing, Leyden, 1973.
-
(1973)
, vol.2
-
-
Happel, J.1
Brenner, H.2
-
83
-
-
33645084334
-
The Stokes resistance of an arbitrary particle. II. An extension
-
Brenner, H., The Stokes resistance of an arbitrary particle. II. An extension, Chem. Eng. Sci., 19, 599, 1964.
-
(1964)
Chem. Eng. Sci
, vol.19
, pp. 599
-
-
Brenner, H.1
-
84
-
-
0040169959
-
The Stokes resistance of an arbitrary particle. III. Shear fields
-
Brenner, H., The Stokes resistance of an arbitrary particle. III. Shear fields, Chem. Eng. Sci., 19, 631, 1964.
-
(1964)
Chem. Eng. Sci
, vol.19
, pp. 631
-
-
Brenner, H.1
-
85
-
-
0001006091
-
Coordinate systems for modeling the hydrodynamic resistance and diffusion-coefficients of irregularly shaped rigid macromolecules
-
Harvey, S.C. and Garcia de la Torre, J.G., Coordinate systems for modeling the hydrodynamic resistance and diffusion-coefficients of irregularly shaped rigid macromolecules, Macromolecules, 13, 960, 1980.
-
(1980)
Macromolecules
, vol.13
, pp. 960
-
-
Harvey, S.C.1
Garcia de la Torre, J.G.2
-
86
-
-
85052221000
-
Neuere Methoden und Ergebnisse in der Hydrodynamik, Mathematik und ihre Anwendungen
-
Oseen, C.W., Neuere Methoden und Ergebnisse in der Hydrodynamik, Mathematik und ihre Anwendungen, Akad. Verl. Ges., Leipzig, 1927.
-
(1927)
Akad. Verl. Ges., Leipzig
-
-
Oseen, C.W.1
-
87
-
-
84949208823
-
Langevin theory of polymer dynamics in dilute solution
-
K. Shuler, Ed., Interscience, New York
-
Zwanzig, R., Langevin theory of polymer dynamics in dilute solution, in Stochastic Processes in Chemical Physics, K. Shuler, Ed., Interscience, New York, 1969, pp. 325-331.
-
(1969)
Stochastic Processes in Chemical Physics
, pp. 325-331
-
-
Zwanzig, R.1
-
88
-
-
84933517499
-
Variational treatment of hydrodynamic interaction in polymers
-
Rotne, J. and Prager, S., Variational treatment of hydrodynamic interaction in polymers, J. Chem. Phys., 50, 4831, 1969.
-
(1969)
J. Chem. Phys
, vol.50
, pp. 4831
-
-
Rotne, J.1
Prager, S.2
-
89
-
-
36849101815
-
Transport properties of polymer chains in dilute solution-hydrodynamic interaction
-
Yamakawa, H., Transport properties of polymer chains in dilute solution-hydrodynamic interaction, J. Chem. Phys., 53, 436, 1970.
-
(1970)
J. Chem. Phys
, vol.53
, pp. 436
-
-
Yamakawa, H.1
-
90
-
-
0017403408
-
Hydrodynamic properties of macromolecular complexes. I. Translation
-
Garcia de la Torre, J.G. and Bloomfield, V.A., Hydrodynamic properties of macromolecular complexes. I. Translation, Biopolymers, 16, 1747, 1977.
-
(1977)
Biopolymers
, vol.16
, pp. 1747
-
-
Garcia de la Torre, J.G.1
Bloomfield, V.A.2
-
91
-
-
0017391665
-
Hydrodynamics of macromolecular complexes. II. Rotation
-
Garcia de la Torre, J.G. and Bloomfield, V.A., Hydrodynamics of macromolecular complexes. II. Rotation, Biopolymers, 16, 1765, 1977.
-
(1977)
Biopolymers
, vol.16
, pp. 1765
-
-
Garcia de la Torre, J.G.1
Bloomfield, V.A.2
-
92
-
-
0019526265
-
Hydrodynamic properties of complex rigid, biological macromolecules-theory and applications
-
Garcia de la Torre, J.G. and Bloomfield, V.A., Hydrodynamic properties of complex, rigid, biological macromolecules-theory and applications, Q. Rev. Biophys., 14, 81, 1981.
-
(1981)
Q. Rev. Biophys
, vol.14
, pp. 81
-
-
Garcia de la Torre, J.G.1
Bloomfield, V.A.2
-
93
-
-
0001753999
-
Low Reynolds-number translational friction of ellipsoids cylinders, dumbbells, and hollow spherical caps-numerical testing of validity of modified Oseen tensor in computing friction of objects modeled as beads on a shell
-
Swanson, E., Teller, D.C., and Haen, C.D., Low Reynolds-number translational friction of ellipsoids, cylinders, dumbbells, and hollow spherical caps-numerical testing of validity of modified Oseen tensor in computing friction of objects modeled as beads on a shell, J. Chem. Phys., 68, 5097, 1978.
-
(1978)
J. Chem. Phys
, vol.68
, pp. 5097
-
-
Swanson, E.1
Teller, D.C.2
Haen, C.D.3
-
94
-
-
36749114754
-
Effects from bead size and hydrodynamic interactions on the translational and rotational coefficients of macromolecular bead models
-
Garcia de la Torre, J.G. and Rodes, V., Effects from bead size and hydrodynamic interactions on the translational and rotational coefficients of macromolecular bead models, J. Chem. Phys., 79, 2454, 1983.
-
(1983)
J. Chem. Phys
, vol.79
, pp. 2454
-
-
Garcia de la Torre, J.G.1
Rodes, V.2
-
95
-
-
0001741346
-
Volume correction for bead model simulations of rotational friction coefficients of macromolecules
-
Antosiewicz, J.M. and Porschke, D., Volume correction for bead model simulations of rotational friction coefficients of macromolecules, J. Phys. Chem., 93, 5301, 1989.
-
(1989)
J. Phys. Chem
, vol.93
, pp. 5301
-
-
Antosiewicz, J.M.1
Porschke, D.2
-
96
-
-
0015222647
-
Interpretation of protein structures-estimation of static accessibility
-
Lee, B. and Richards, F.M., Interpretation of protein structures-estimation of static accessibility, J. Mol. Biol., 55, 379, 1971.
-
(1971)
J. Mol. Biol
, vol.55
, pp. 379
-
-
Lee, B.1
Richards, F.M.2
-
97
-
-
0000741446
-
Time-dependent birefringence linear dichroism, and optical-rotation resulting from rigid-body rotational diffusion
-
Wegener, W.A., Dowben, R.M., and Koester, V.J., Time-dependent birefringence, linear dichroism, and optical-rotation resulting from rigid-body rotational diffusion, J. Chem. Phys., 70, 622, 1979.
-
(1979)
J. Chem. Phys
, vol.70
, pp. 622
-
-
Wegener, W.A.1
Dowben, R.M.2
Koester, V.J.3
-
98
-
-
0008664122
-
Sinusoidal electric birefringence of dilute rigid-body suspensions at low field strengths
-
Wegener, W.A., Sinusoidal electric birefringence of dilute rigid-body suspensions at low field strengths, J. Chem. Phys., 84, 6005, 1986.
-
(1986)
J. Chem. Phys
, vol.84
, pp. 6005
-
-
Wegener, W.A.1
-
99
-
-
0030989905
-
Influence of static and dynamic bends on the birefringence decay profile of RNA helices: Brownian dynamics simulations
-
Zacharias, M. and Hagerman, P.J., Influence of static and dynamic bends on the birefringence decay profile of RNA helices: Brownian dynamics simulations, Biophys. J., 73, 318, 1997.
-
(1997)
Biophys. J
, vol.73
, pp. 318
-
-
Zacharias, M.1
Hagerman, P.J.2
-
100
-
-
13244299277
-
Strong effect of hydrodynamic coupling on the electric dichroism of bent rods
-
Porschke, D. and Antosiewicz, J.M., Strong effect of hydrodynamic coupling on the electric dichroism of bent rods, J. Phys. Chem. B, 109, 1034, 2005.
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 1034
-
-
Porschke, D.1
Antosiewicz, J.M.2
-
101
-
-
0024993099
-
Permanent dipole-moment of transfer-RNAs and variation of their structure in solution
-
Porschke, D. and Antosiewicz, J.M., Permanent dipole-moment of transfer-RNAs and variation of their structure in solution, Biophys. J., 58, 403, 1990.
-
(1990)
Biophys. J
, vol.58
, pp. 403
-
-
Porschke, D.1
Antosiewicz, J.M.2
-
102
-
-
0002557374
-
The electric moments and the relaxation times of proteins as measured from their influence upon the dielectric constants of solutions
-
E. Cohn and J. Edsall, Eds., Reinhold Publication Corporation, New York
-
Oncley, J., The electric moments and the relaxation times of proteins as measured from their influence upon the dielectric constants of solutions, in Proteins, Amino Acids and Peptides, E. Cohn and J. Edsall, Eds., Reinhold Publication Corporation, New York, 1943.
-
(1943)
Proteins, Amino Acids and Peptides
-
-
Oncley, J.1
-
103
-
-
0000824742
-
The influence of dipole moment fluctuations on the dielectric increment of proteins in solution
-
Kirkwood, J.G. and Shumaker, J.B., The influence of dipole moment fluctuations on the dielectric increment of proteins in solution, Proc. Natl. Acad. Sci. USA, 38, 855, 1952.
-
(1952)
Proc. Natl. Acad. Sci. USA
, vol.38
, pp. 855
-
-
Kirkwood, J.G.1
Shumaker, J.B.2
-
104
-
-
0021926711
-
The mechanism of ion polarization along DNA double helices
-
Porschke, D., The mechanism of ion polarization along DNA double helices, Biophys. Chem., 22, 237, 1985.
-
(1985)
Biophys. Chem
, vol.22
, pp. 237
-
-
Porschke, D.1
-
105
-
-
0000463977
-
Contribution a l'étude de l'effet Kerr présenté par les solutions diluées de macromolécules rigide
-
Benoit, H., Contribution a l'étude de l'effet Kerr présenté par les solutions diluées de macromolécules rigides, Ann. de Phys., 12e Serie, 6, 561, 1951.
-
(1951)
Ann. de Phys., 12e Serie
, vol.6
, pp. 561
-
-
Benoit, H.1
-
106
-
-
0029004903
-
Crystal-structure of lac repressor core tetramer and its implications for DNA looping
-
Friedman, A.M., Fischmann, T.O., and Steitz, T.A., Crystal-structure of lac repressor core tetramer and its implications for DNA looping, Science, 268, 1721, 1995.
-
(1995)
Science
, vol.268
, pp. 1721
-
-
Friedman, A.M.1
Fischmann, T.O.2
Steitz, T.A.3
-
107
-
-
0029938053
-
Crystal structure of the lactose operon repressor and its complexes with DNA and inducer
-
Lewis, M., et al., Crystal structure of the lactose operon repressor and its complexes with DNA and inducer, Science, 271, 1247, 1996.
-
(1996)
Science
, vol.271
, pp. 1247
-
-
Lewis, M.1
-
108
-
-
0025914242
-
Crystal-structure of a cap-DNA complex-the DNA is bent by 90-degrees
-
Schultz, S.C., Shields, G.C., and Steitz, T.A., Crystal-structure of a cap-DNA complex-the DNA is bent by 90-degrees, Science, 253, 1001, 1991.
-
(1991)
Science
, vol.253
, pp. 1001
-
-
Schultz, S.C.1
Shields, G.C.2
Steitz, T.A.3
-
109
-
-
0031588024
-
The cyclic AMP receptor promoter DNA complex: A comparison of crystal and solution structure by quantitative molecular electrooptics
-
MeyerAlmes, F.J. and Porschke, D., The cyclic AMP receptor promoter DNA complex: A comparison of crystal and solution structure by quantitative molecular electrooptics, J. Mol. Biol., 269, 842, 1997.
-
(1997)
J. Mol. Biol
, vol.269
, pp. 842
-
-
MeyerAlmes, F.J.1
Porschke, D.2
-
110
-
-
10844274538
-
Electro-optical properties of DNA
-
Bertolotto, J., Roston, G., and Ascheri, M., Electro-optical properties of DNA, Prog. Colloid Polym. Sci., 128, 25, 2004.
-
(2004)
Prog. Colloid Polym. Sci
, vol.128
, pp. 25
-
-
Bertolotto, J.1
Roston, G.2
Ascheri, M.3
-
111
-
-
0028325140
-
DNA double helices with positive electric dichroism and permanent dipole-moments- nonsymmetrical charge-distributions and frozen configurations
-
Porschke, D., DNA double helices with positive electric dichroism and permanent dipole-moments- nonsymmetrical charge-distributions and frozen configurations, Biophys. Chem., 49, 127, 1994.
-
(1994)
Biophys. Chem
, vol.49
, pp. 127
-
-
Porschke, D.1
-
112
-
-
0006379005
-
Brownian dynamics of the polarization of rodlike polyelectrolytes
-
Grycuk, T., Antosiewicz, J.M., and Porschke, D., Brownian dynamics of the polarization of rodlike polyelectrolytes, J. Phys. Chem., 98, 10881, 1994.
-
(1994)
J. Phys. Chem
, vol.98
, pp. 10881
-
-
Grycuk, T.1
Antosiewicz, J.M.2
Porschke, D.3
-
113
-
-
0025911729
-
Persistence length and bending dynamics of DNA from electrooptical measurements at high salt concentrations
-
Porschke, D., Persistence length and bending dynamics of DNA from electrooptical measurements at high salt concentrations, Biophys. Chem., 40, 169, 1991.
-
(1991)
Biophys. Chem
, vol.40
, pp. 169
-
-
Porschke, D.1
-
114
-
-
0024372454
-
Electric dichroism and bending amplitudes of DNA fragments according to a simple orientation function for weakly bent rods
-
Porschke, D., Electric dichroism and bending amplitudes of DNA fragments according to a simple orientation function for weakly bent rods, Biopolymers, 28, 1383, 1989.
-
(1989)
Biopolymers
, vol.28
, pp. 1383
-
-
Porschke, D.1
-
115
-
-
2342637689
-
Dynamics of the B-A transition of DNA double helices
-
Jose, D. and Porschke, D., Dynamics of the B-A transition of DNA double helices, Nucleic Acids Res., 32, 2251, 2004.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 2251
-
-
Jose, D.1
Porschke, D.2
-
116
-
-
28044465975
-
The dynamics of the B-A transition of natural DNA double helices
-
Jose, D. and Porschke, D., The dynamics of the B-A transition of natural DNA double helices, J. Am. Chem. Soc. 127, 16120, 2005.
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 16120
-
-
Jose, D.1
Porschke, D.2
|