메뉴 건너뛰기




Volumn 32, Issue 7, 2004, Pages 2251-2258

Dynamics of the B-A transition of DNA double helices

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; ALCOHOL; DNA B; DOUBLE STRANDED DNA; NUCLEIC ACID; THYMINE; DNA;

EID: 2342637689     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh551     Document Type: Article
Times cited : (45)

References (39)
  • 1
    • 0038497542 scopus 로고
    • Molecular structure of nucleic acids
    • Watson,J.D. and Crick,F.H.C. (1953) Molecular structure of nucleic acids. Nature, 171, 737-738.
    • (1953) Nature , vol.171 , pp. 737-738
    • Watson, J.D.1    Crick, F.H.C.2
  • 2
    • 36949065046 scopus 로고
    • Molecular structure of deoxypentose nucleic acids
    • Wilkins,M.H.F., Stokes,A.R. and Wilson,H.R. (1953) Molecular structure of deoxypentose nucleic acids. Nature, 171, 738-740.
    • (1953) Nature , vol.171 , pp. 738-740
    • Wilkins, M.H.F.1    Stokes, A.R.2    Wilson, H.R.3
  • 3
    • 0000812966 scopus 로고
    • Molecular configuration in sodium thymonucleate
    • Franklin,R.E. and Gosling,R.G. (1953) Molecular configuration in sodium thymonucleate. Nature, 171, 740-741.
    • (1953) Nature , vol.171 , pp. 740-741
    • Franklin, R.E.1    Gosling, R.G.2
  • 4
    • 0344687358 scopus 로고    scopus 로고
    • The discovery of the DNA double helix
    • Klug,A. (2004) The discovery of the DNA double helix. J. Mol. Biol., 335, 3-26.
    • (2004) J. Mol. Biol. , vol.335 , pp. 3-26
    • Klug, A.1
  • 6
    • 0034698001 scopus 로고    scopus 로고
    • A-form conformational motifs in ligand-bound DNA structures
    • Lu,X.J., Shakked,Z. and Olson,W.K. (2000) A-form conformational motifs in ligand-bound DNA structures. J. Mol. Biol., 300, 819-840.
    • (2000) J. Mol. Biol. , vol.300 , pp. 819-840
    • Lu, X.J.1    Shakked, Z.2    Olson, W.K.3
  • 7
    • 0032518524 scopus 로고    scopus 로고
    • Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal
    • Kiefer,J.R., Mao,C., Braman,J.C. and Beese,L.S. (1998) Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal. Nature, 391, 304-307.
    • (1998) Nature , vol.391 , pp. 304-307
    • Kiefer, J.R.1    Mao, C.2    Braman, J.C.3    Beese, L.S.4
  • 9
    • 0033579380 scopus 로고    scopus 로고
    • Structure of a transcribing T7 RNA polymerase initiation complex
    • Cheatham,G.M.T. and Steitz,T.A. (1999) Structure of a transcribing T7 RNA polymerase initiation complex. Science, 286, 2305-2309.
    • (1999) Science , vol.286 , pp. 2305-2309
    • Cheatham, G.M.T.1    Steitz, T.A.2
  • 10
    • 33748674257 scopus 로고    scopus 로고
    • B to A transition on the nanosecond time scale
    • Yang,L. and Pettitt,B.M. (1996) B to A transition on the nanosecond time scale. J. Phys. Chem., 100, 2564-2566.
    • (1996) J. Phys. Chem. , vol.100 , pp. 2564-2566
    • Yang, L.1    Pettitt, B.M.2
  • 11
    • 0029941154 scopus 로고    scopus 로고
    • Observation of the A-DNA to B-DNA transition during unrestrained molecular dynamics in aqueous solution
    • Cheatham,T.E. and Kollman,P.A. (1996) Observation of the A-DNA to B-DNA transition during unrestrained molecular dynamics in aqueous solution. J. Mol. Biol., 259, 434-444.
    • (1996) J. Mol. Biol. , vol.259 , pp. 434-444
    • Cheatham, T.E.1    Kollman, P.A.2
  • 12
    • 0000115258 scopus 로고    scopus 로고
    • Molecular dynamics studies on the conformational preferences of a DNA double helix in water and an ethanol/water mixture: Theoretical considerations of the B-A transition
    • Sprous,D., Young,M.A. and Beveridge,D.L. (1998) Molecular dynamics studies on the conformational preferences of a DNA double helix in water and an ethanol/water mixture: Theoretical considerations of the B-A transition. J. Phys. Chem. B, 102, 4658-4667.
    • (1998) J. Phys. Chem. B , vol.102 , pp. 4658-4667
    • Sprous, D.1    Young, M.A.2    Beveridge, D.L.3
  • 13
    • 0039335080 scopus 로고    scopus 로고
    • Unrestrained molecular dynamics simulations of [d(AT)5]2 duplex in aqueous solution: Hydration and binding of sodium ions in the minor groove
    • Stefl,R. and Koca,J. (2000) Unrestrained molecular dynamics simulations of [d(AT)5]2 duplex in aqueous solution: hydration and binding of sodium ions in the minor groove. J. Am. Chem. Soc., 122, 5025-5033.
    • (2000) J. Am. Chem. Soc. , vol.122 , pp. 5025-5033
    • Stefl, R.1    Koca, J.2
  • 16
    • 0037106324 scopus 로고    scopus 로고
    • Mediation of the A/B-DNA helix transition by G-tracts in the crystal structure of duplex CATGGGCCCATG
    • Ng,H.L. and Dickerson,R.E. (2002) Mediation of the A/B-DNA helix transition by G-tracts in the crystal structure of duplex CATGGGCCCATG. Nucleic Acids Res., 30, 4061-4067.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 4061-4067
    • Ng, H.L.1    Dickerson, R.E.2
  • 17
    • 0026722438 scopus 로고
    • A-DNA in solution as studied by diverse approaches
    • Ivanov,V.I. and Krylov,D.Y. (1992) A-DNA in solution as studied by diverse approaches. Methods Enzymol., 211, 111-127.
    • (1992) Methods Enzymol. , vol.211 , pp. 111-127
    • Ivanov, V.I.1    Krylov, D.Y.2
  • 19
    • 0031837979 scopus 로고    scopus 로고
    • Time-resolved analysis of macromolecular structures during reactions by stopped-flow electro-optics
    • Porschke,D. (1998) Time-resolved analysis of macromolecular structures during reactions by stopped-flow electro-optics. Biophys. J., 75, 528-537.
    • (1998) Biophys. J. , vol.75 , pp. 528-537
    • Porschke, D.1
  • 20
    • 0000125188 scopus 로고
    • Relaxation methods
    • Friess,S.L., Lewis,S. and Weissberger,A. (eds), Wiley, New York
    • Eigen,M. and DeMaeyer,L. (1963) Relaxation methods. In Friess,S.L., Lewis,S. and Weissberger,A. (eds), Technique of Organic Chemistry VIII part II. Wiley, New York, pp. 895-1054.
    • (1963) Technique of Organic Chemistry VIII Part II , pp. 895-1054
    • Eigen, M.1    DeMaeyer, L.2
  • 21
    • 9244229410 scopus 로고
    • Entwicklung einer E-Feldsprungapparatur mit optischer Detektion und ihre Anwendung auf die Assoziation amphiphiler Elektrolyte
    • Thesis University of Braunschweig, Germany
    • Grünhagen,H.H. (1974) Entwicklung einer E-Feldsprungapparatur mit optischer Detektion und ihre Anwendung auf die Assoziation amphiphiler Elektrolyte. Thesis. University of Braunschweig, Germany.
    • (1974)
    • Grünhagen, H.H.1
  • 22
    • 33646937708 scopus 로고    scopus 로고
    • Analysis of chemical and physical relaxation processes of polyelectrolytes by electric field pulse methods: A comparison of critical comments with facts
    • Porschke,D. (1996) Analysis of chemical and physical relaxation processes of polyelectrolytes by electric field pulse methods: A comparison of critical comments with facts. Ber. Bunsenges. Phys. Chem., 100, 715-720.
    • (1996) Ber. Bunsenges. Phys. Chem. , vol.100 , pp. 715-720
    • Porschke, D.1
  • 23
    • 0020161682 scopus 로고
    • Orientation relaxation of DNA restriction fragments and the internal mobility of the double helix
    • Diekmann,S., Hillen,W., Morgeneyer,B., Wells,R.D. and Porschke,D. (1982) Orientation relaxation of DNA restriction fragments and the internal mobility of the double helix. Biophys. Chem., 15, 263-270.
    • (1982) Biophys. Chem. , vol.15 , pp. 263-270
    • Diekmann, S.1    Hillen, W.2    Morgeneyer, B.3    Wells, R.D.4    Porschke, D.5
  • 24
    • 0021870990 scopus 로고
    • The conformation of single stranded oligonucleotides and of oligonucleotide-oligopeptide complexes from their rotation relaxation in the nanosecond time range
    • Porschke,D. and Jung,M. (1985) The conformation of single stranded oligonucleotides and of oligonucleotide-oligopeptide complexes from their rotation relaxation in the nanosecond time range. J. Biomol. Struct. Dyn., 2, 1173-1184.
    • (1985) J. Biomol. Struct. Dyn. , vol.2 , pp. 1173-1184
    • Porschke, D.1    Jung, M.2
  • 26
    • 0022187785 scopus 로고
    • Effects of electric fields on biopolymers
    • Porschke,D. (1985) Effects of electric fields on biopolymers. Annu. Rev. Phys. Chem., 36, 159-178.
    • (1985) Annu. Rev. Phys. Chem. , vol.36 , pp. 159-178
    • Porschke, D.1
  • 29
    • 0035193091 scopus 로고    scopus 로고
    • Sequence-dependent B↔A transition in DNA evaluated with dimeric and trimeric scales
    • Tolstorukov,M.Y., Ivanov,V.I., Malenkov,G.G., Jernigan,R.L. and Zhurkin,V.B. (2001) Sequence-dependent B↔A transition in DNA evaluated with dimeric and trimeric scales. Biophys. J., 81, 3409-3421.
    • (2001) Biophys. J. , vol.81 , pp. 3409-3421
    • Tolstorukov, M.Y.1    Ivanov, V.I.2    Malenkov, G.G.3    Jernigan, R.L.4    Zhurkin, V.B.5
  • 31
    • 0020130381 scopus 로고
    • Electric properties and structure of DNA restriction fragments from measurements of the electric dichroism
    • Diekmann,S., Hillen,W., Jung,M., Wells,R.D. and Porschke,D. (1982) Electric properties and structure of DNA restriction fragments from measurements of the electric dichroism. Biophys. Chem., 15, 157-167.
    • (1982) Biophys. Chem. , vol.15 , pp. 157-167
    • Diekmann, S.1    Hillen, W.2    Jung, M.3    Wells, R.D.4    Porschke, D.5
  • 32
    • 85015087906 scopus 로고    scopus 로고
    • Ten years of tension: Single-molecule DNA mechanics
    • Bustamante,C., Bryant,Z. and Smith,S.B. (2003) Ten years of tension: single-molecule DNA mechanics. Nature, 421, 423-427.
    • (2003) Nature , vol.421 , pp. 423-427
    • Bustamante, C.1    Bryant, Z.2    Smith, S.B.3
  • 33
    • 0017359465 scopus 로고
    • Elementary steps of base recognition and helix-coil transitions in nucleic acids
    • Porschke,D. (1977) Elementary steps of base recognition and helix-coil transitions in nucleic acids. Mol. Biol. Biochem. Biophys., 24, 191-218.
    • (1977) Mol. Biol. Biochem. Biophys. , vol.24 , pp. 191-218
    • Porschke, D.1
  • 34
    • 0017812854 scopus 로고
    • Molecular states in single-stranded adenylate chains by relaxation analysis
    • Porschke,D. (1978) Molecular states in single-stranded adenylate chains by relaxation analysis. Biopolymers, 17, 315-323.
    • (1978) Biopolymers , vol.17 , pp. 315-323
    • Porschke, D.1
  • 35
    • 0034681945 scopus 로고    scopus 로고
    • Dynamics of the RNA hairpin GNRA tetraloop
    • Menger,M., Eckstein,F. and Porschke,D. (2000) Dynamics of the RNA hairpin GNRA tetraloop. Biochemistry, 39, 4500-4507.
    • (2000) Biochemistry , vol.39 , pp. 4500-4507
    • Menger, M.1    Eckstein, F.2    Porschke, D.3
  • 38
    • 0027096732 scopus 로고
    • Dodecamer d(GCGTACGTACGC) in the A-DNA form: Comparison with the isomorphous non-alternating dodecamer d(CCGTACGTACGG)
    • Bingman,C., Jain,S., Zon,G. and Sundaralingam,M. (1992) Dodecamer d(GCGTACGTACGC) in the A-DNA form: Comparison with the isomorphous non-alternating dodecamer d(CCGTACGTACGG). Nucleic Acids Res., 20, 6637-6647.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 6637-6647
    • Bingman, C.1    Jain, S.2    Zon, G.3    Sundaralingam, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.