메뉴 건너뛰기




Volumn 75, Issue 1, 1998, Pages 528-537

Time-resolved analysis of macromolecular structures during reactions by stopped-flow electrooptics

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ETHIDIUM;

EID: 0031837979     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(98)77542-3     Document Type: Article
Times cited : (23)

References (33)
  • 1
    • 0030590218 scopus 로고    scopus 로고
    • The global conformation of an active hammerhead RNA during the process of self-cleavage
    • Amiri, K. M. A., and P. J. Hagerman. 1996. The global conformation of an active hammerhead RNA during the process of self-cleavage. J. Mol. Biol. 261:125-134.
    • (1996) J. Mol. Biol. , vol.261 , pp. 125-134
    • Amiri, K.M.A.1    Hagerman, P.J.2
  • 2
    • 0001741346 scopus 로고
    • Volume corrections for bead model simulations of rotational friction coefficients of macromolecules
    • Antosiewicz, J., and D. Porschke. 1989. Volume corrections for bead model simulations of rotational friction coefficients of macromolecules. J. Phys. Chem. 93:5301-5305.
    • (1989) J. Phys. Chem. , vol.93 , pp. 5301-5305
    • Antosiewicz, J.1    Porschke, D.2
  • 3
    • 0016738438 scopus 로고
    • DNA-ethidium reaction kinetics: Demonstration of direct ligand transfer between DNA binding sites
    • Bresloff, J. L., and D. M. Crothers. 1975. DNA-ethidium reaction kinetics: demonstration of direct ligand transfer between DNA binding sites. J. Mol. Biol. 95:103-123.
    • (1975) J. Mol. Biol. , vol.95 , pp. 103-123
    • Bresloff, J.L.1    Crothers, D.M.2
  • 4
    • 0030053867 scopus 로고    scopus 로고
    • Electric linear dichroism as a new tool to study sequence preference in drug binding to DNA
    • Colson, P., C. Bailly, and C. Houssier. 1996. Electric linear dichroism as a new tool to study sequence preference in drug binding to DNA. Biophys. Chem. 58:125-140.
    • (1996) Biophys. Chem. , vol.58 , pp. 125-140
    • Colson, P.1    Bailly, C.2    Houssier, C.3
  • 5
    • 0004606397 scopus 로고
    • Eine Temperatursprungmethode zur Untersuchung chemischer Relaxation
    • Czerlinski, G., and M. Eigen. 1959. Eine Temperatursprungmethode zur Untersuchung chemischer Relaxation. Z. Elektrochem. 63:652-661.
    • (1959) Z. Elektrochem. , vol.63 , pp. 652-661
    • Czerlinski, G.1    Eigen, M.2
  • 6
    • 0000125188 scopus 로고
    • Relaxation methods
    • A. Weinberger, editor. Wiley-Interscience, New York
    • Eigen, M., and L. DeMaeyer. 1963. Relaxation methods. In Techniques of Organic Chemistry. Vol. VII, Part II. A. Weinberger, editor. Wiley-Interscience, New York.
    • (1963) Techniques of Organic Chemistry , vol.7 , Issue.2 PART
    • Eigen, M.1    DeMaeyer, L.2
  • 7
    • 0018505707 scopus 로고
    • Kinetics of nucleic acid-large ligand interactions: Exact Monte Carlo treatment and limiting cases of reversible binding
    • Epstein, I. R. 1979. Kinetics of nucleic acid-large ligand interactions: exact Monte Carlo treatment and limiting cases of reversible binding. Biopolymers. 18:2037-2050.
    • (1979) Biopolymers , vol.18 , pp. 2037-2050
    • Epstein, I.R.1
  • 8
    • 0344901806 scopus 로고
    • Versatile stopped-flow temperature jump apparatus
    • Erman, J. E., and G. G. Hammes. 1966. Versatile stopped-flow temperature jump apparatus. Rev. Sci. Instrum. 37:746-750.
    • (1966) Rev. Sci. Instrum. , vol.37 , pp. 746-750
    • Erman, J.E.1    Hammes, G.G.2
  • 10
    • 84985720098 scopus 로고
    • Monte Carlo approach to the analysis of the rotational diffusion of wormlike chains
    • Hagerman, P. J., and B. H. Zimm. 1981. Monte Carlo approach to the analysis of the rotational diffusion of wormlike chains. Biopolymers. 20:1481-1502.
    • (1981) Biopolymers , vol.20 , pp. 1481-1502
    • Hagerman, P.J.1    Zimm, B.H.2
  • 11
    • 0019886906 scopus 로고
    • Preparation of milligram amounts of 21 deoxyribonucleic acid restriction fragments
    • Hillen, W., R. D. Klein, and R. D. Wells. 1981. Preparation of milligram amounts of 21 deoxyribonucleic acid restriction fragments. Biochemistry. 20:3748-3756.
    • (1981) Biochemistry , vol.20 , pp. 3748-3756
    • Hillen, W.1    Klein, R.D.2    Wells, R.D.3
  • 12
    • 0017341430 scopus 로고
    • Chemical relaxation kinetic studies of E. coli RNA polymerase binding to poly[d(A-T)] using ethidium bromide as a fluorescence probe
    • Jovin, T. M., and G. Striker. 1977. Chemical relaxation kinetic studies of E. coli RNA polymerase binding to poly[d(A-T)] using ethidium bromide as a fluorescence probe. Mol. Biochem. Biophys. 24:245-281.
    • (1977) Mol. Biochem. Biophys. , vol.24 , pp. 245-281
    • Jovin, T.M.1    Striker, G.2
  • 13
    • 0022338551 scopus 로고
    • Pressure-jump study of the kinetics of ethidium bromide binding to DNA
    • MacGregor, R. B., Jr., R. M. Clegg, and T. M. Jovin. 1985. Pressure-jump study of the kinetics of ethidium bromide binding to DNA. Biochemistry. 24:5503-5510.
    • (1985) Biochemistry , vol.24 , pp. 5503-5510
    • MacGregor R.B., Jr.1    Clegg, R.M.2    Jovin, T.M.3
  • 14
    • 0023668135 scopus 로고
    • Viscosity dependence of ethidium-DNA intercalation
    • MacGregor, R. B., Jr., R. M. Clegg, and T. M. Jovin. 1987. Viscosity dependence of ethidium-DNA intercalation. Biochemistry. 26: 4008-4016.
    • (1987) Biochemistry , vol.26 , pp. 4008-4016
    • MacGregor R.B., Jr.1    Clegg, R.M.2    Jovin, T.M.3
  • 15
    • 0016366591 scopus 로고
    • Fluorescence correlation spectroscopy. II. An experimental realization
    • Magde, D., E. L. Elson, and W. W. Webb. 1974. Fluorescence correlation spectroscopy. II. An experimental realization. Biopolymers. 13:29-61.
    • (1974) Biopolymers , vol.13 , pp. 29-61
    • Magde, D.1    Elson, E.L.2    Webb, W.W.3
  • 16
    • 0019320455 scopus 로고
    • Hydrogen-deuterium exchange analysis of ligand-macromolecule interactions: Ethidium-deoxyribonucleic acid system
    • Mandal, C., S. W. Englander, and N. R. Kallenbach. 1980. Hydrogen-deuterium exchange analysis of ligand-macromolecule interactions: ethidium-deoxyribonucleic acid system. Biochemistry. 19:5819-5825.
    • (1980) Biochemistry , vol.19 , pp. 5819-5825
    • Mandal, C.1    Englander, S.W.2    Kallenbach, N.R.3
  • 17
    • 0016175370 scopus 로고
    • Theoretical aspects of DNA-protein interactions: Cooperative and non-cooperative binding of large ligands to a one-dimensional homogeneous lattice
    • McGhee, J. D., and P. H. von Hippel. 1974. Theoretical aspects of DNA-protein interactions: cooperative and non-cooperative binding of large ligands to a one-dimensional homogeneous lattice. J. Mol. Biol. 86: 469-489.
    • (1974) J. Mol. Biol. , vol.86 , pp. 469-489
    • McGhee, J.D.1    Von Hippel, P.H.2
  • 18
    • 0027190865 scopus 로고
    • Mechanism of intercalation into the DNA double helix by ethidium
    • Meyer-Almes, F. J., and D. Porschke. 1993. Mechanism of intercalation into the DNA double helix by ethidium. Biochemistry. 32:4246-4253.
    • (1993) Biochemistry , vol.32 , pp. 4246-4253
    • Meyer-Almes, F.J.1    Porschke, D.2
  • 19
    • 0031588024 scopus 로고    scopus 로고
    • The cyclic AMP receptor promoter DNA complex: A comparison of crystal and solution structure by quantitative molecular electrooptics
    • Meyer-Almes, F. J., and D. Porschke. 1997. The cyclic AMP receptor promoter DNA complex: a comparison of crystal and solution structure by quantitative molecular electrooptics. J. Mol. Biol. 269:842-850.
    • (1997) J. Mol. Biol. , vol.269 , pp. 842-850
    • Meyer-Almes, F.J.1    Porschke, D.2
  • 20
    • 0027440066 scopus 로고
    • T-jump fluorescence relaxation study of the binding of ethidium cation to natural DNA
    • Monaco, R. R., and W. C. Gardiner. 1993. T-jump fluorescence relaxation study of the binding of ethidium cation to natural DNA. Biochem. Biophys. Res. Commun. 196:975-983.
    • (1993) Biochem. Biophys. Res. Commun. , vol.196 , pp. 975-983
    • Monaco, R.R.1    Gardiner, W.C.2
  • 21
    • 0017160839 scopus 로고
    • A combined stopped flow temperature jump apparatus with dual beam detection
    • Patel, R. C. 1976. A combined stopped flow temperature jump apparatus with dual beam detection. Chem. Instrum. 7:83-99.
    • (1976) Chem. Instrum. , vol.7 , pp. 83-99
    • Patel, R.C.1
  • 22
    • 0025911729 scopus 로고
    • Persistence length and bending dynamics of DNA from electrooptical measurements at high salt concentrations
    • Porschke, D. 1991. Persistence length and bending dynamics of DNA from electrooptical measurements at high salt concentrations. Biophys. Chem. 40:169-179.
    • (1991) Biophys. Chem. , vol.40 , pp. 169-179
    • Porschke, D.1
  • 23
    • 0024993099 scopus 로고
    • Permanent dipole of tRNAs and variation of their structure in solution
    • Porschke, D., and J. Antosiewicz. 1990. Permanent dipole of tRNAs and variation of their structure in solution. Biophys. J. 58:403-411.
    • (1990) Biophys. J. , vol.58 , pp. 403-411
    • Porschke, D.1    Antosiewicz, J.2
  • 24
    • 0021870990 scopus 로고
    • The conformation of single stranded oligonucleotides and of oligonucleotide-oligopeptide complexes from their rotation relaxation in the nanosecond time range
    • Porschke, D., and M. Jung. 1985. The conformation of single stranded oligonucleotides and of oligonucleotide-oligopeptide complexes from their rotation relaxation in the nanosecond time range. J. Biomol. Struct. & Dyn. 2:1173-1184.
    • (1985) J. Biomol. Struct. & Dyn. , vol.2 , pp. 1173-1184
    • Porschke, D.1    Jung, M.2
  • 25
    • 0024298837 scopus 로고
    • Structure of the Tet repressor and Tet repressor-operator complexes in solution from electrooptical measurements and hydrodynamic simulations
    • Porschke, D., K. Tovar, and J. Antosiewicz. 1988. Structure of the Tet repressor and Tet repressor-operator complexes in solution from electrooptical measurements and hydrodynamic simulations. Biochemistry. 27:4674-4679.
    • (1988) Biochemistry , vol.27 , pp. 4674-4679
    • Porschke, D.1    Tovar, K.2    Antosiewicz, J.3
  • 26
    • 0021399154 scopus 로고
    • Relaxation kinetics of DNA-ligand binding including direct transfer
    • Ryan, D. P., and D. M. Crothers. 1984. Relaxation kinetics of DNA-ligand binding including direct transfer. Biopolymers.23:537-562.
    • (1984) Biopolymers , vol.23 , pp. 537-562
    • Ryan, D.P.1    Crothers, D.M.2
  • 27
    • 0345332878 scopus 로고
    • A stopped-flow, temperature-jump spectrophotometer
    • Stewart, J. E., and P. Lum. 1969. A stopped-flow, temperature-jump spectrophotometer. American Laboratory. 91:91-94, 96-98, 100-101.
    • (1969) American Laboratory , vol.91 , pp. 91-94
    • Stewart, J.E.1    Lum, P.2
  • 28
    • 4243642135 scopus 로고
    • Comparison of theories for the translational and rotational diffusion coefficients of rod-like macromolecules. Application to short DNA fragments
    • Tirado, M. M., C. Lopez Martinez, and J. Garcia de la Torre. 1984. Comparison of theories for the translational and rotational diffusion coefficients of rod-like macromolecules. Application to short DNA fragments. J. Chem. Phys. 81:2047-2052.
    • (1984) J. Chem. Phys. , vol.81 , pp. 2047-2052
    • Tirado, M.M.1    Lopez Martinez, C.2    Garcia De La Torre, J.3
  • 31
    • 0019834393 scopus 로고
    • A simple stopped-flow temperature jump apparatus
    • Verkman, A. S., J. A. Dix, and A. A. Pandiscio. 1981. A simple stopped-flow temperature jump apparatus. Anal Biochem. 117:164-169.
    • (1981) Anal Biochem. , vol.117 , pp. 164-169
    • Verkman, A.S.1    Dix, J.A.2    Pandiscio, A.A.3
  • 32
    • 0019198115 scopus 로고
    • Kinetics of drug-DNA interaction. Dependence of the binding mechanism on structure of the ligand
    • Wakelin, L. P. G., and M. J. Waring. 1980. Kinetics of drug-DNA interaction. Dependence of the binding mechanism on structure of the ligand. J. Mol. Biol. 144:183-214.
    • (1980) J. Mol. Biol. , vol.144 , pp. 183-214
    • Wakelin, L.P.G.1    Waring, M.J.2
  • 33
    • 0022406278 scopus 로고
    • Mechanism of intercalation: Ion effects on the equilibrium and kinetic constants for the interaction of propidium and ethidium with DNA
    • Wilson, W. D., C. R. Krishnamoorthy, Y. H. Wang, and J. C. Smith. 1985. Mechanism of intercalation: ion effects on the equilibrium and kinetic constants for the interaction of propidium and ethidium with DNA. Biopolymers. 24:1941-1961.
    • (1985) Biopolymers , vol.24 , pp. 1941-1961
    • Wilson, W.D.1    Krishnamoorthy, C.R.2    Wang, Y.H.3    Smith, J.C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.