Namot2—a redesigned nucleic acid modeling tool: Construction of non-canonical dna structures

Bioinformatics

Volumn 12, Issue 1, 1996, Pages 25-30

  Carter, Eugene S ^a   Tung, Chang Shung ^a  

^a LOS ALAMOS NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER MODEL; DNA STRUCTURE; LIBRARY; NUCLEIC ACID STRUCTURE; PRIORITY JOURNAL;

BASE SEQUENCE; DNA; DNA, SUPERHELICAL; EVALUATION STUDIES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; NUCLEIC ACIDS; SOFTWARE;

EID: 0030003578     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/12.1.25     Document Type: Article

References (23)

1. ANSI (1989) Programing Language C, X3.159-1989.
2. Arnott, S. and Hukins, W.L. (1972) Biochem. Biophvs. Res. Comnnm.. 47, 1504-1509.
3. Berman, H.M., Olson, W.K., Beveridge, D.L, Westbrook.J., Gelbin.A., Demeny, T., Hsieh.S.-H., Srinivasan.A.R. and Schneider.B. (1992) Biophvs.J., 63, 751-759.
4. Bresenham, J.E. (1965) IBM Syst. J., 4, 25-30.
5. Chen, J. and Seeman, N.C. (1991) Nature, 350, 631-633.
6. Ferguson, K..A. (1964) Metabolism, 13, 985-1002.
7. Gao.Q., Williams, L.D., Egli, M., Rabinovich.D., Chen, S.-L., Quigley, G.J. and Rich, A. (1991) Proc. Nail. Acad. Sci. USA, 88, 2422-2426.
8. Kernighan.B.W. and Ritchie.D.M. (1978) The C Programming Lan-guage, Prentice Hall, Englewood Cliffs, NJ.
9. Klug, A., Rhodes.D., Smith, J., Finch.J.T. and Thomas.J.O. (1980) Nature, 287, 509-516.
10. Lambert, B., Segal-Bendirdjian, E., Esnault, C., Le Pecq, J.B., Roques, B.P., Jones, B. and Yeung, A.T. (1990) Anti-Cancer Drug Des., 5, 43-53.
11. Metropolis.N., Rosenbluth.A.W., Rosenbluth, M.N., Teller.A.H. and Teller.E. (1953) J. Chem. Phvs., 21, 1087-1092.
12. PorterJ.K. (1978) Comput. Graphics, 12, 282-285.
13. Radhakrishnan, I. and Patel, D. (1994) J. Mol. Biol., 241, 600-619.
14. Sayle, R. and Bissell, A. (1992) In Proc. 10th Eurographics UK 1992 Conference, University of Edinburgh, Scotland, April 1992.
15. Seeman, N.C. (1991) NAMOTechnology, 2, 149-158.
16. Smith.F.W. and Feigon, J. (1992) Nature, 356, 164-168.
17. Soumpasis, D.M. and Tung, C.-S. (1988) J. Biomol. Struct. Dvn., 6, 397-420.
18. Tung, C.-S. and Carter, E.S., II (1994) Comput. Applic. Biosci.. 10, 427-433.
19. Tung, C.-S., Soumpasis, D.M. and Hummer, G. (1994) J. Biomol. Struct. Dyn., 11, 1327-1344.
20. von Kitzing, E., Lilley.D.M.J. and Diekmann.S. (1990) Nucleic Acids Res., 18,2671-2683.
21. Wang, Y., Mueller, J.E., Kemper, B. and Seeman.N.C. (1991) Biochemistry, 30, 5667-5674.
22. Williams.L.D. and Gao, Q. (1992) Biochemistry, 31, 4315-4324.
23. Wu, H.-M. and Crothers.D.M. (1984) Nature, 308, 509-513.