-
1
-
-
64649083354
-
The incidence of co-morbidities related to obesity and overweight: A systematic review and meta-analysis
-
Guh, D. P. et al. The incidence of co-morbidities related to obesity and overweight: a systematic review and meta-analysis. BMC public health 9, 88, https://doi.org/10.1186/1471-2458-9-88 (2009).
-
(2009)
BMC Public Health
, vol.9
, pp. 88
-
-
Guh, D.P.1
-
2
-
-
38949108241
-
Body-mass index and incidence of cancer: A systematic review and meta-analysis of prospective observational studies
-
Renehan, A. G., Tyson, M., Egger, M., Heller, R. F. & Zwahlen, M. Body-mass index and incidence of cancer: a systematic review and meta-analysis of prospective observational studies. Lancet (London, England) 371, 569-578, https://doi.org/10.1016/s0140-6736(08)60269-x (2008).
-
(2008)
Lancet (London, England)
, vol.371
, pp. 569-578
-
-
Renehan, A.G.1
Tyson, M.2
Egger, M.3
Heller, R.F.4
Zwahlen, M.5
-
3
-
-
34548628795
-
Association of overweight with increased risk of coronary heart disease partly independent of blood pressure and cholesterol levels: A meta-analysis of 21 cohort studies including more than 300 000 persons
-
Bogers, R. P. et al. Association of overweight with increased risk of coronary heart disease partly independent of blood pressure and cholesterol levels: a meta-analysis of 21 cohort studies including more than 300 000 persons. Archives of internal medicine 167, 1720-1728, https://doi.org/10.1001/archinte.167.16.1720 (2007).
-
(2007)
Archives of Internal Medicine
, vol.167
, pp. 1720-1728
-
-
Bogers, R.P.1
-
4
-
-
84879108278
-
Obesity genomics: Assessing the transferability of susceptibility loci across diverse populations
-
Lu, Y. & Loos, R. J. Obesity genomics: assessing the transferability of susceptibility loci across diverse populations. Genome medicine 5, 55, https://doi.org/10.1186/gm459 (2013).
-
(2013)
Genome Medicine
, vol.5
, pp. 55
-
-
Lu, Y.1
Loos, R.J.2
-
5
-
-
84904606822
-
Epigenetic mechanisms affecting regulation of energy balance: Many questions, few answers
-
Waterland, R. A. Epigenetic mechanisms affecting regulation of energy balance: many questions, few answers. Annual review of nutrition 34, 337-355, https://doi.org/10.1146/annurev-nutr-071813-105315 (2014).
-
(2014)
Annual Review of Nutrition
, vol.34
, pp. 337-355
-
-
Waterland, R.A.1
-
6
-
-
74249119678
-
Obesity and the human microbiome
-
Ley, R. E. Obesity and the human microbiome. Current opinion in gastroenterology 26, 5-11, https://doi.org/10.1097/MOG.0b013e328333d751 (2010).
-
(2010)
Current Opinion in Gastroenterology
, vol.26
, pp. 5-11
-
-
Ley, R.E.1
-
7
-
-
84871891872
-
Obesity and the gut microbiome: Striving for causality
-
Harley, I. T. & Karp, C. L. Obesity and the gut microbiome: Striving for causality. Molecular metabolism 1, 21-31, https://doi.org/10.1016/j.molmet.2012.07.002 (2012).
-
(2012)
Molecular Metabolism
, vol.1
, pp. 21-31
-
-
Harley, I.T.1
Karp, C.L.2
-
9
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh, P. J. et al. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444, 1027-1031, https://doi.org/10.1038/nature05414 (2006).
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
-
10
-
-
84883478660
-
Gut microbiota from twins discordant for obesity modulate metabolism in mice
-
Ridaura, V. K. et al. Gut microbiota from twins discordant for obesity modulate metabolism in mice. Science (New York, N.Y.) 341, 1241214, https://doi.org/10.1126/science.1241214 (2013).
-
(2013)
Science (New York, N.Y.)
, vol.341
, pp. 1241214
-
-
Ridaura, V.K.1
-
11
-
-
33845901507
-
Microbial ecology: Human gut microbes associated with obesity
-
Ley, R. E., Turnbaugh, P. J., Klein, S. & Gordon, J. I. Microbial ecology: human gut microbes associated with obesity. Nature 444, 1022-1023, https://doi.org/10.1038/4441022a (2006).
-
(2006)
Nature
, vol.444
, pp. 1022-1023
-
-
Ley, R.E.1
Turnbaugh, P.J.2
Klein, S.3
Gordon, J.I.4
-
13
-
-
41849127118
-
Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome
-
Turnbaugh, P. J., Backhed, F., Fulton, L. & Gordon, J. I. Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell host & microbe 3, 213-223, https://doi.org/10.1016/j.chom.2008.02.015 (2008).
-
(2008)
Cell Host & Microbe
, vol.3
, pp. 213-223
-
-
Turnbaugh, P.J.1
Backhed, F.2
Fulton, L.3
Gordon, J.I.4
-
14
-
-
78649887273
-
Composition and energy harvesting capacity of the gut microbiota: Relationship to diet, obesity and time in mouse models
-
Murphy, E. F. et al. Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse models. Gut 59, 1635-1642, https://doi.org/10.1136/gut.2010.215665 (2010).
-
(2010)
Gut
, vol.59
, pp. 1635-1642
-
-
Murphy, E.F.1
-
15
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh, P. J. et al. A core gut microbiome in obese and lean twins. Nature 457, 480-484, https://doi.org/10.1038/nature07540 (2009).
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
-
16
-
-
70349631208
-
Monitoring bacterial community of human gut microbiota reveals an increase in Lactobacillus in obese patients and Methanogens in anorexic patients
-
Armougom, F., Henry, M., Vialettes, B., Raccah, D. & Raoult, D. Monitoring bacterial community of human gut microbiota reveals an increase in Lactobacillus in obese patients and Methanogens in anorexic patients. PloS one 4, e7125, https://doi.org/10.1371/journal.pone.0007125 (2009).
-
(2009)
PloS One
, vol.4
, pp. e7125
-
-
Armougom, F.1
Henry, M.2
Vialettes, B.3
Raccah, D.4
Raoult, D.5
-
17
-
-
73949137604
-
Microbiota and SCFA in lean and overweight healthy subjects
-
Schwiertz, A. et al. Microbiota and SCFA in lean and overweight healthy subjects. Obesity (Silver Spring, Md.) 18, 190-195, https://doi.org/10.1038/oby.2009.167 (2010).
-
(2010)
Obesity (Silver Spring, Md.)
, vol.18
, pp. 190-195
-
-
Schwiertz, A.1
-
18
-
-
72449190581
-
Associations between dietary habits and body mass index with gut microbiota composition and fecal water genotoxicity: An observational study in African American and Caucasian American volunteers
-
Mai, V., McCrary, Q. M., Sinha, R. & Glei, M. Associations between dietary habits and body mass index with gut microbiota composition and fecal water genotoxicity: an observational study in African American and Caucasian American volunteers. Nutrition journal 8, 49, https://doi.org/10.1186/1475-2891-8-49 (2009).
-
(2009)
Nutrition Journal
, vol.8
, pp. 49
-
-
Mai, V.1
McCrary, Q.M.2
Sinha, R.3
Glei, M.4
-
19
-
-
56549122798
-
Human colonic microbiota associated with diet, obesity and weight loss
-
Duncan, S. H. et al. Human colonic microbiota associated with diet, obesity and weight loss. International journal of obesity (2005) 32, 1720-1724, https://doi.org/10.1038/ijo.2008.155 (2008).
-
(2008)
International Journal of Obesity (2005)
, vol.32
, pp. 1720-1724
-
-
Duncan, S.H.1
-
20
-
-
84875370244
-
Microbiota conservation and BMI signatures in adult monozygotic twins
-
Tims, S. et al. Microbiota conservation and BMI signatures in adult monozygotic twins. Isme j 7, 707-717, https://doi.org/10.1038/ismej.2012.146 (2013).
-
(2013)
Isme J
, vol.7
, pp. 707-717
-
-
Tims, S.1
-
21
-
-
85021754254
-
Comparative analysis of gut microbiota associated with body mass index in a large Korean cohort
-
Yun, Y. et al. Comparative analysis of gut microbiota associated with body mass index in a large Korean cohort. BMC microbiology 17, 151, https://doi.org/10.1186/s12866-017-1052-0 (2017).
-
(2017)
BMC Microbiology
, vol.17
, pp. 151
-
-
Yun, Y.1
-
22
-
-
84908348194
-
Meta-analyses of human gut microbes associated with obesity and IBD
-
Walters, W. A., Xu, Z. & Knight, R. Meta-analyses of human gut microbes associated with obesity and IBD. FEBS letters 588, 4223-4233, https://doi.org/10.1016/j.febslet.2014.09.039 (2014).
-
(2014)
FEBS Letters
, vol.588
, pp. 4223-4233
-
-
Walters, W.A.1
Xu, Z.2
Knight, R.3
-
23
-
-
84897138661
-
A taxonomic signature of obesity in the microbiome? Getting to the guts of the matter
-
Finucane, M. M., Sharpton, T. J., Laurent, T. J. & Pollard, K. S. A taxonomic signature of obesity in the microbiome? Getting to the guts of the matter. PloS one 9, e84689, https://doi.org/10.1371/journal.pone.0084689 (2014).
-
(2014)
PloS One
, vol.9
, pp. e84689
-
-
Finucane, M.M.1
Sharpton, T.J.2
Laurent, T.J.3
Pollard, K.S.4
-
24
-
-
84986596815
-
Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome
-
Sze, M. A. & Schloss, P. D. Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome. mBio 7, https://doi.org/10.1128/mBio.01018-16 (2016).
-
(2016)
MBio
, vol.7
-
-
Sze, M.A.1
Schloss, P.D.2
-
25
-
-
84899787502
-
Revealing the bacterial butyrate synthesis pathways by analyzing (meta)genomic data
-
Vital, M., Howe, A. C. & Tiedje, J. M. Revealing the bacterial butyrate synthesis pathways by analyzing (meta)genomic data. mBio 5, e00889, https://doi.org/10.1128/mBio.00889-14 (2014).
-
(2014)
MBio
, vol.5
, pp. e00889
-
-
Vital, M.1
Howe, A.C.2
Tiedje, J.M.3
-
26
-
-
84963525850
-
Microbiota-based model improves the sensitivity of fecal immunochemical test for detecting colonic lesions
-
Baxter, N. T., Ruffin, M. T. T., Rogers, M. A. & Schloss, P. D. Microbiota-based model improves the sensitivity of fecal immunochemical test for detecting colonic lesions. Genome medicine 8, 37, https://doi.org/10.1186/s13073-016-0290-3 (2016).
-
(2016)
Genome Medicine
, vol.8
, pp. 37
-
-
Baxter, N.T.1
Ruffin, M.T.T.2
Rogers, M.A.3
Schloss, P.D.4
-
27
-
-
84882703646
-
The gut microbiota and obesity: From correlation to causality
-
Zhao, L. The gut microbiota and obesity: from correlation to causality. Nature reviews. Microbiology 11, 639-647, https://doi.org/10.1038/nrmicro3089 (2013).
-
(2013)
Nature Reviews. Microbiology
, vol.11
, pp. 639-647
-
-
Zhao, L.1
-
28
-
-
48249125862
-
Changes in gut microbiota control metabolic endotoxemia-induced inflammation in high-fat diet-induced obesity and diabetes in mice
-
Cani, P. D. et al. Changes in gut microbiota control metabolic endotoxemia-induced inflammation in high-fat diet-induced obesity and diabetes in mice. Diabetes 57, 1470-1481, https://doi.org/10.2337/db07-1403 (2008).
-
(2008)
Diabetes
, vol.57
, pp. 1470-1481
-
-
Cani, P.D.1
-
29
-
-
84905403663
-
The SCFA receptor GPR43 and energy metabolism
-
Kimura, I., Inoue, D., Hirano, K. & Tsujimoto, G. The SCFA Receptor GPR43 and Energy Metabolism. Frontiers in endocrinology 5, 85, https://doi.org/10.3389/fendo.2014.00085 (2014).
-
(2014)
Frontiers in Endocrinology
, vol.5
, pp. 85
-
-
Kimura, I.1
Inoue, D.2
Hirano, K.3
Tsujimoto, G.4
-
30
-
-
84859587827
-
Butyrate and propionate protect against diet-induced obesity and regulate gut hormones via free fatty acid receptor 3-independent mechanisms
-
Lin, H. V. et al. Butyrate and propionate protect against diet-induced obesity and regulate gut hormones via free fatty acid receptor 3-independent mechanisms. PloS one 7, e35240, https://doi.org/10.1371/journal.pone.0035240 (2012).
-
(2012)
PloS One
, vol.7
, pp. e35240
-
-
Lin, H.V.1
-
31
-
-
84962129359
-
Short-Chain Fatty Acids Protect Against High-Fat Diet-Induced Obesity via a PPARgamma-Dependent Switch from Lipogenesis to Fat Oxidation
-
Den Besten, G. et al. Short-Chain Fatty Acids Protect Against High-Fat Diet-Induced Obesity via a PPARgamma-Dependent Switch From Lipogenesis to Fat Oxidation. Diabetes 64, 2398-2408, https://doi.org/10.2337/db14-1213 (2015).
-
(2015)
Diabetes
, vol.64
, pp. 2398-2408
-
-
Den Besten, G.1
-
32
-
-
85027935270
-
Intestinal Methanobrevibacter smithii but not total bacteria is related to diet-induced weight gain in rats
-
Mathur, R. et al. Intestinal Methanobrevibacter smithii but not total bacteria is related to diet-induced weight gain in rats. Obesity (Silver Spring, Md.) 21, 748-754, https://doi.org/10.1002/oby.20277 (2013).
-
(2013)
Obesity (Silver Spring, Md.)
, vol.21
, pp. 748-754
-
-
Mathur, R.1
-
33
-
-
85014721388
-
Microbiota-induced obesity requires farnesoid X receptor
-
Parséus, A. et al. Microbiota-induced obesity requires farnesoid X receptor. Gut 66, 429-437, https://doi.org/10.1136/gutjnl-2015-310283 (2017).
-
(2017)
Gut
, vol.66
, pp. 429-437
-
-
Parséus, A.1
-
34
-
-
84855651037
-
Description of Christensenella minuta gen. nov., sp. nov., isolated from human faeces, which forms a distinct branch in the order Clostridiales, and proposal of Christensenellaceae fam. Nov
-
Morotomi, M., Nagai, F. & Watanabe, Y. Description of Christensenella minuta gen. nov., sp. nov., isolated from human faeces, which forms a distinct branch in the order Clostridiales, and proposal of Christensenellaceae fam. nov. International journal of systematic and evolutionary microbiology 62, 144-149, https://doi.org/10.1099/ijs.0.026989-0 (2012).
-
(2012)
International Journal of Systematic and Evolutionary Microbiology
, vol.62
, pp. 144-149
-
-
Morotomi, M.1
Nagai, F.2
Watanabe, Y.3
-
35
-
-
84910096224
-
Human genetics shape the gut microbiome
-
Goodrich, J. K. et al. Human genetics shape the gut microbiome. Cell 159, 789-799, https://doi.org/10.1016/j.cell.2014.09.053 (2014).
-
(2014)
Cell
, vol.159
, pp. 789-799
-
-
Goodrich, J.K.1
-
36
-
-
84992036214
-
Heritable components of the human fecal microbiome are associated with visceral fat
-
Beaumont, M. et al. Heritable components of the human fecal microbiome are associated with visceral fat. Genome biology 17, 189, https://doi.org/10.1186/s13059-016-1052-7 (2016).
-
(2016)
Genome Biology
, vol.17
, pp. 189
-
-
Beaumont, M.1
-
37
-
-
84961223839
-
Oscillospira: A central, enigmatic component of the human gut microbiota
-
Konikoff, T. & Gophna, U. Oscillospira: a Central, Enigmatic Component of the Human Gut Microbiota. Trends in microbiology, https://doi.org/10.1016/j.tim.2016.02.015 (2016).
-
(2016)
Trends in Microbiology
-
-
Konikoff, T.1
Gophna, U.2
-
38
-
-
84929074103
-
Comparison of the gut microbiota of people in France and Saudi Arabia
-
Yasir, M. et al. Comparison of the gut microbiota of people in France and Saudi Arabia. Nutrition & diabetes 5, e153, https://doi.org/10.1038/nutd.2015.3 (2015).
-
(2015)
Nutrition & Diabetes
, vol.5
, pp. e153
-
-
Yasir, M.1
-
39
-
-
84889666627
-
Human intestinal microbiota composition is associated with local and systemic inflammation in obesity
-
Verdam, F. J. et al. Human intestinal microbiota composition is associated with local and systemic inflammation in obesity. Obesity (Silver Spring, Md.) 21, E607-615, https://doi.org/10.1002/oby.20466 (2013).
-
(2013)
Obesity (Silver Spring, Md.)
, vol.21
, pp. E607-615
-
-
Verdam, F.J.1
-
40
-
-
84895077527
-
A gut microbiota-targeted dietary intervention for amelioration of chronic inflammation underlying metabolic syndrome
-
Xiao, S. et al. A gut microbiota-targeted dietary intervention for amelioration of chronic inflammation underlying metabolic syndrome. FEMS microbiology ecology 87, 357-367, https://doi.org/10.1111/1574-6941.12228 (2014).
-
(2014)
FEMS Microbiology Ecology
, vol.87
, pp. 357-367
-
-
Xiao, S.1
-
41
-
-
47249088192
-
Gut microbes and obesity in adolescents
-
Sotos, M. et al. Gut microbes and obesity in adolescents. The Proceedings of the Nutrition Society 67, 1-E20, https://doi.org/10.1017/S0029665108006290 (2008).
-
(2008)
The Proceedings of the Nutrition Society
, vol.67
, pp. E1-E20
-
-
Sotos, M.1
-
42
-
-
84991053856
-
Intestinal crosstalk between bile acids and microbiota and its impact on host metabolism
-
Wahlstrom, A., Sayin, S. I., Marschall, H. U. & Backhed, F. Intestinal Crosstalk between Bile Acids and Microbiota and Its Impact on Host Metabolism. Cell metabolism 24, 41-50, https://doi.org/10.1016/j.cmet.2016.05.005 (2016).
-
(2016)
Cell Metabolism
, vol.24
, pp. 41-50
-
-
Wahlstrom, A.1
Sayin, S.I.2
Marschall, H.U.3
Backhed, F.4
-
43
-
-
31444454037
-
Bile acids induce energy expenditure by promoting intracellular thyroid hormone activation
-
Watanabe, M. et al. Bile acids induce energy expenditure by promoting intracellular thyroid hormone activation. Nature 439, 484-489, http://www.nature.com/nature/journal/v439/n7075/suppinfo/nature04330-S1.html (2006).
-
(2006)
Nature
, vol.439
, pp. 484-489
-
-
Watanabe, M.1
-
44
-
-
84890711873
-
Methanogens in human health and disease
-
Pimentel, M., Gunsalus, R. P., Rao, S. S. C. & Zhang, H. Methanogens in Human Health and Disease. Am J Gastroenterol Suppl 1, 28-33 (2012).
-
(2012)
Am J Gastroenterol Suppl
, vol.1
, pp. 28-33
-
-
Pimentel, M.1
Gunsalus, R.P.2
Rao, S.S.C.3
Zhang, H.4
-
45
-
-
84887849444
-
Correlation between body mass index and gut concentrations of Lactobacillus reuteri, Bifidobacterium animalis, Methanobrevibacter smithii and Escherichia coli
-
Million, M. et al. Correlation between body mass index and gut concentrations of Lactobacillus reuteri, Bifidobacterium animalis, Methanobrevibacter smithii and Escherichia coli. International journal of obesity (2005) 37, 1460-1466, https://doi.org/10.1038/ijo.2013.20 (2013).
-
(2013)
International Journal of Obesity (2005)
, vol.37
, pp. 1460-1466
-
-
Million, M.1
-
46
-
-
84876253206
-
Methane and hydrogen positivity on breath test is associated with greater body mass index and body fat
-
Mathur, R. et al. Methane and hydrogen positivity on breath test is associated with greater body mass index and body fat. The Journal of clinical endocrinology and metabolism 98, E698-702, https://doi.org/10.1210/jc.2012-3144 (2013).
-
(2013)
The Journal of Clinical Endocrinology and Metabolism
, vol.98
, pp. E698-702
-
-
Mathur, R.1
-
47
-
-
84955183594
-
Gut colonization with methanobrevibacter smithii is associated with childhood weight development
-
Mbakwa, C. A. et al. Gut colonization with methanobrevibacter smithii is associated with childhood weight development. Obesity (Silver Spring, Md.) 23, 2508-2516, https://doi.org/10.1002/oby.21266 (2015).
-
(2015)
Obesity (Silver Spring, Md.)
, vol.23
, pp. 2508-2516
-
-
Mbakwa, C.A.1
-
48
-
-
81255143285
-
Associations among organochlorine pesticides, Methanobacteriales, and obesity in Korean women
-
Lee, H. S. et al. Associations among organochlorine pesticides, Methanobacteriales, and obesity in Korean women. PloS one 6, e27773, https://doi.org/10.1371/journal.pone.0027773 (2011).
-
(2011)
PloS One
, vol.6
, pp. e27773
-
-
Lee, H.S.1
-
49
-
-
84900304172
-
Role of the lower and upper intestine in the production and absorption of gut microbiota-derived PUFA metabolites
-
Druart, C. et al. Role of the lower and upper intestine in the production and absorption of gut microbiota-derived PUFA metabolites. PloS one 9, e87560, https://doi.org/10.1371/journal.pone.0087560 (2014).
-
(2014)
PloS One
, vol.9
, pp. e87560
-
-
Druart, C.1
-
50
-
-
84960412755
-
Sources and bioactive properties of conjugated dietary fatty acids
-
Hennessy, A. A., Ross, P. R., Fitzgerald, G. F. & Stanton, C. Sources and Bioactive Properties of Conjugated Dietary Fatty Acids. Lipids 51, 377-397, https://doi.org/10.1007/s11745-016-4135-z (2016).
-
(2016)
Lipids
, vol.51
, pp. 377-397
-
-
Hennessy, A.A.1
Ross, P.R.2
Fitzgerald, G.F.3
Stanton, C.4
-
51
-
-
84928902130
-
Sex, body mass index, and dietary fiber intake influence the human gut microbiome
-
Dominianni, C. et al. Sex, body mass index, and dietary fiber intake influence the human gut microbiome. PloS one 10, e0124599, https://doi.org/10.1371/journal.pone.0124599 (2015).
-
(2015)
PloS One
, vol.10
, pp. e0124599
-
-
Dominianni, C.1
-
52
-
-
84938803690
-
Comparison of the gut microbiota composition between obese and non-obese individuals in a Japanese population, as analyzed by terminal restriction fragment length polymorphism and next-generation sequencing
-
Kasai, C. et al. Comparison of the gut microbiota composition between obese and non-obese individuals in a Japanese population, as analyzed by terminal restriction fragment length polymorphism and next-generation sequencing. BMC gastroenterology 15, 100, https://doi.org/10.1186/s12876-015-0330-2 (2015).
-
(2015)
BMC Gastroenterology
, vol.15
, pp. 100
-
-
Kasai, C.1
-
53
-
-
84883110880
-
Richness of human gut microbiome correlates with metabolic markers
-
Le Chatelier, E. et al. Richness of human gut microbiome correlates with metabolic markers. Nature 500, 541-546, https://doi.org/10.1038/nature12506 (2013).
-
(2013)
Nature
, vol.500
, pp. 541-546
-
-
Le Chatelier, E.1
-
54
-
-
84883057637
-
Dietary intervention impact on gut microbial gene richness
-
Cotillard, A. et al. Dietary intervention impact on gut microbial gene richness. Nature 500, 585-588, https://doi.org/10.1038/nature12480 (2013).
-
(2013)
Nature
, vol.500
, pp. 585-588
-
-
Cotillard, A.1
-
55
-
-
85002410389
-
Neonatal androgen exposure causes persistent gut microbiota dysbiosis related to metabolic disease in adult female rats
-
Moreno-Indias, I. et al. Neonatal Androgen Exposure Causes Persistent Gut Microbiota Dysbiosis Related to Metabolic Disease in Adult Female Rats. Endocrinology 157, 4888-4898, https://doi.org/10.1210/en.2016-1317 (2016).
-
(2016)
Endocrinology
, vol.157
, pp. 4888-4898
-
-
Moreno-Indias, I.1
-
56
-
-
85027944984
-
Dietary effects on human gut microbiome diversity
-
Xu, Z. & Knight, R. Dietary effects on human gut microbiome diversity. The British journal of nutrition 113(Suppl), S1-5, https://doi.org/10.1017/s0007114514004127 (2015).
-
(2015)
The British Journal of Nutrition
, vol.113
, pp. S1-5
-
-
Xu, Z.1
Knight, R.2
-
57
-
-
84892828465
-
Diet rapidly and reproducibly alters the human gut microbiome
-
David, L. A. et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature 505, 559-563, https://doi.org/10.1038/nature12820 (2014).
-
(2014)
Nature
, vol.505
, pp. 559-563
-
-
David, L.A.1
-
58
-
-
77950669604
-
The effect of diet on the human gut microbiome: A metagenomic analysis in humanized gnotobiotic mice
-
Turnbaugh, P. J. et al. The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Science translational medicine 1, 6ra14, https://doi.org/10.1126/scitranslmed.3000322 (2009).
-
(2009)
Science Translational Medicine
, vol.1
, pp. 6ra14
-
-
Turnbaugh, P.J.1
-
59
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
Wu, G. D. et al. Linking long-term dietary patterns with gut microbial enterotypes. Science (New York, N.Y.) 334, 105-108, https://doi.org/10.1126/science.1208344 (2011).
-
(2011)
Science (New York, N.Y.)
, vol.334
, pp. 105-108
-
-
Wu, G.D.1
-
60
-
-
84945419901
-
The national cancer institute's dietary assessment primer: A resource for diet research
-
Thompson, F. E. et al. The National Cancer Institute's Dietary Assessment Primer: A Resource for Diet Research. Journal of the Academy of Nutrition and Dietetics 115, 1986-1995, https://doi.org/10.1016/j.jand.2015.08.016 (2015).
-
(2015)
Journal of the Academy of Nutrition and Dietetics
, vol.115
, pp. 1986-1995
-
-
Thompson, F.E.1
-
61
-
-
85032979764
-
A comparison of fecal immunochemical and high-sensitivity guaiac tests for colorectal cancer screening
-
Shapiro, J. A. et al. A Comparison of Fecal Immunochemical and High-Sensitivity Guaiac Tests for Colorectal Cancer Screening. The American journal of gastroenterology 112, 1728-1735, https://doi.org/10.1038/ajg.2017.285 (2017).
-
(2017)
The American Journal of Gastroenterology
, vol.112
, pp. 1728-1735
-
-
Shapiro, J.A.1
-
62
-
-
85017332003
-
The gut microbiota in conventional and serrated precursors of colorectal cancer
-
Peters, B. A. et al. The gut microbiota in conventional and serrated precursors of colorectal cancer. Microbiome 4, 69, https://doi.org/10.1186/s40168-016-0218-6 (2016).
-
(2016)
Microbiome
, vol.4
, pp. 69
-
-
Peters, B.A.1
-
63
-
-
84957831145
-
Collecting fecal samples for microbiome analyses in epidemiology studies
-
Sinha, R. et al. Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies. Cancer epidemiology, biomarkers & prevention: a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 25, 407-416, https://doi.org/10.1158/1055-9965.epi-15-0951 (2016).
-
(2016)
Cancer Epidemiology, Biomarkers & Prevention: A Publication of the American Association for Cancer Research, Cosponsored by the American Society of Preventive Oncology
, vol.25
, pp. 407-416
-
-
Sinha, R.1
-
64
-
-
84899898655
-
Comparison of methods for fecal microbiome biospecimen collection
-
Dominianni, C., Wu, J., Hayes, R. B. & Ahn, J. Comparison of methods for fecal microbiome biospecimen collection. BMC microbiology 14, 103, https://doi.org/10.1186/1471-2180-14-103 (2014).
-
(2014)
BMC Microbiology
, vol.14
, pp. 103
-
-
Dominianni, C.1
Wu, J.2
Hayes, R.B.3
Ahn, J.4
-
65
-
-
84982224114
-
Preservation methods differ in fecal microbiome stability, affecting suitability for field studies
-
Song, S. J. et al. Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies. mSystems 1, https://doi.org/10.1128/mSystems.00021-16 (2016).
-
(2016)
MSystems
, vol.1
-
-
Song, S.J.1
-
66
-
-
79952005915
-
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
-
Caporaso, J. G. et al. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proceedings of the National Academy of Sciences of the United States of America 108(Suppl 1), 4516-4522, https://doi.org/10.1073/pnas.1000080107 (2011).
-
(2011)
Proceedings of the National Academy of Sciences of the United States of America
, vol.108
, pp. 4516-4522
-
-
Caporaso, J.G.1
-
67
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nature methods 7, 335-336, https://doi.org/10.1038/nmeth.f.303 (2010).
-
(2010)
Nature Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
-
68
-
-
0002294347
-
A simple sequentially rejective multiple test procedure
-
Holm, S. A Simple Sequentially Rejective Multiple Test Procedure. Scandinavian Journal of Statistics 6, 65-70 (1979).
-
(1979)
Scandinavian Journal of Statistics
, vol.6
, pp. 65-70
-
-
Holm, S.1
-
69
-
-
78751575501
-
UniFrac: An effective distance metric for microbial community comparison
-
Lozupone, C., Lladser, M. E., Knights, D., Stombaugh, J. & Knight, R. UniFrac: an effective distance metric for microbial community comparison. The ISME journal 5, 169-172, https://doi.org/10.1038/ismej.2010.133 (2011).
-
(2011)
The ISME Journal
, vol.5
, pp. 169-172
-
-
Lozupone, C.1
Lladser, M.E.2
Knights, D.3
Stombaugh, J.4
Knight, R.5
-
70
-
-
0000071395
-
Some distance properties of latent root and vector methods used in multivariate analysis
-
GOWER, J. C. Some distance properties of latent root and vector methods used in multivariate analysis. Biometrika 53, 325-338, https://doi.org/10.1093/biomet/53.3-4.325 (1966).
-
(1966)
Biometrika
, vol.53
, pp. 325-338
-
-
Gower, J.C.1
-
71
-
-
0042815050
-
Canonical Analysis of Principal Coordinates: A Useful Method of Constrained Ordination for Ecology
-
Anderson, M. J. & Willis, T. J. Canonical Analysis of Principal Coordinates: A Useful Method of Constrained Ordination for Ecology. Ecology 84, 511-525, https://doi.org/10.1890/0012-9658(2003)084[0511:CAOPCA]2.0.CO;2 (2003).
-
(2003)
Ecology
, vol.84
, pp. 511-525
-
-
Anderson, M.J.1
Willis, T.J.2
-
72
-
-
0002154022
-
A new method for non-parametric multivariate analysis of variance
-
Anderson, M. J. A new method for non-parametric multivariate analysis of variance. Austral Ecol 26, 32-46, https://doi.org/10.1046/j.1442-9993.2001.01070.x (2001).
-
(2001)
Austral Ecol
, vol.26
, pp. 32-46
-
-
Anderson, M.J.1
-
73
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome biology 15, 550, https://doi.org/10.1186/s13059-014-0550-8 (2014).
-
(2014)
Genome Biology
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
74
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Stat Soc B, 289-300 (1995).
-
(1995)
J R Stat Soc B
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
75
-
-
84959177668
-
A multiple testing procedure for multi-dimensional pairwise comparisons with application to gene expression studies
-
Grandhi, A., Guo, W. & Peddada, S. D. A multiple testing procedure for multi-dimensional pairwise comparisons with application to gene expression studies. BMC bioinformatics 17, 104, https://doi.org/10.1186/s12859-016-0937-5 (2016).
-
(2016)
BMC Bioinformatics
, vol.17
, pp. 104
-
-
Grandhi, A.1
Guo, W.2
Peddada, S.D.3
-
76
-
-
84884127512
-
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
-
Langille, M. G. et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nature biotechnology 31, 814-821, https://doi.org/10.1038/nbt.2676 (2013).
-
(2013)
Nature Biotechnology
, vol.31
, pp. 814-821
-
-
Langille, M.G.1
-
77
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. & Tanabe, M. KEGG for integration and interpretation of large-scale molecular data sets. Nucleic acids research 40, D109-114, https://doi.org/10.1093/nar/gkr988 (2012).
-
(2012)
Nucleic Acids Research
, vol.40
, pp. D109-114
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
78
-
-
80053915297
-
AUC-RF: A new strategy for genomic profiling with random forest
-
Calle, M. L., Urrea, V., Boulesteix, A. L. & Malats, N. AUC-RF: a new strategy for genomic profiling with random forest. Human heredity 72, 121-132, https://doi.org/10.1159/000330778 (2011).
-
(2011)
Human Heredity
, vol.72
, pp. 121-132
-
-
Calle, M.L.1
Urrea, V.2
Boulesteix, A.L.3
Malats, N.4
|