-
1
-
-
85014843778
-
Linear growth faltering in infants is associated with Acidaminococcus sp. And community-level changes in the gut microbiota
-
Gough EK, Stephens DA, Moodie EE, Prendergast AJ, Stoltzfus RJ, Humphrey JH, et al. Linear growth faltering in infants is associated with Acidaminococcus sp. and community-level changes in the gut microbiota. Microbiome 2015;3:24.
-
(2015)
Microbiome
, vol.3
, pp. 24
-
-
Gough, E.K.1
Stephens, D.A.2
Moodie, E.E.3
Prendergast, A.J.4
Stoltzfus, R.J.5
Humphrey, J.H.6
-
2
-
-
84879245628
-
Fecal microbiome and volatile organic compound metabolome in obese humans with nonalcoholic fatty liver disease
-
e1-3
-
Raman M, Ahmed I, Gillevet PM, Probert CS, Ratcliffe NM, Smith S, et al. Fecal microbiome and volatile organic compound metabolome in obese humans with nonalcoholic fatty liver disease. Clin Gastroenterol Hepatol 2013;11:868-75 e1-3.
-
(2013)
Clin Gastroenterol Hepatol
, vol.11
, pp. 868-875
-
-
Raman, M.1
Ahmed, I.2
Gillevet, P.M.3
Probert, C.S.4
Ratcliffe, N.M.5
Smith, S.6
-
3
-
-
84868155170
-
Disruption of the human gut microbiota following Norovirus infection
-
Nelson AM, Walk ST, Taube S, Taniuchi M, Houpt ER, Wobus CE, et al. Disruption of the human gut microbiota following Norovirus infection. PLoS One 2012;7:e48224.
-
(2012)
PLoS One
, vol.7
, pp. e48224
-
-
Nelson, A.M.1
Walk, S.T.2
Taube, S.3
Taniuchi, M.4
Houpt, E.R.5
Wobus, C.E.6
-
4
-
-
84923838855
-
Childhood obesity is associated to the interaction between firmicutes and high energy food consumption
-
Estrada-Velasco BI, Cruz M, Garcia-Mena J, Valladares Salgado A, Peralta Romero J, Guna Serrano Mde L, et al. [Childhood obesity is associated to the interaction between firmicutes and high energy food consumption]. Nutr Hosp 2014;31:1074-81.
-
(2014)
Nutr Hosp
, vol.31
, pp. 1074-1081
-
-
Estrada-Velasco, B.I.1
Cruz, M.2
Garcia-Mena, J.3
Valladares, S.A.4
Peralta, R.J.5
Guna, S.M.L.6
-
5
-
-
84894314858
-
Prevalence, incidence, and risk factors of intestinal parasites in Danish primary care patients with irritable bowel syndrome
-
Engsbro AL, Stensvold CR, VedelNielsen H, Bytzer P. Prevalence, incidence, and risk factors of intestinal parasites in Danish primary care patients with irritable bowel syndrome. Scand J Infect Dis 2014;46:204-9.
-
(2014)
Scand J Infect Dis
, vol.46
, pp. 204-209
-
-
Engsbro, A.L.1
Stensvold, C.R.2
VedelNielsen, H.3
Bytzer, P.4
-
6
-
-
84872387623
-
Fusobacterium is associated with colorectal adenomas
-
McCoy AN, Araujo-Perez F, Azcarate-Peril A, Yeh JJ, Sandler RS, Keku TO. Fusobacterium is associated with colorectal adenomas. PLoS One 2013;8: e53653.
-
(2013)
PLoS One
, vol.8
, pp. e53653
-
-
McCoy, A.N.1
Araujo-Perez, F.2
Azcarate-Peril, A.3
Yeh, J.J.4
Sandler, R.S.5
Keku, T.O.6
-
7
-
-
84924026956
-
Potential of fecal microbiota for early-stage detection of colorectal cancer
-
Zeller G, Tap J, Voigt AY, Sunagawa S, Kultima JR, Costea PI, et al. Potential of fecal microbiota for early-stage detection of colorectal cancer. Mol Syst Biol 2014;10:766.
-
(2014)
Mol Syst Biol
, vol.10
, pp. 766
-
-
Zeller, G.1
Tap, J.2
Voigt, A.Y.3
Sunagawa, S.4
Kultima, J.R.5
Costea, P.I.6
-
8
-
-
84891473723
-
Humangutmicrobiome and risk for colorectal cancer
-
AhnJ, Sinha R, Pei Z, DominianniC, WuJ, Shi J, et al.Humangutmicrobiome and risk for colorectal cancer. J Natl Cancer Inst 2013;105:1907-11.
-
(2013)
J Natl Cancer Inst
, vol.105
, pp. 1907-1911
-
-
Ahn, J.1
Sinha, R.2
Pei, Z.3
Dominianni, C.4
Wu, J.5
Shi, J.6
-
9
-
-
84929512453
-
Sequencing and beyond: Integrating molecular òmics' for microbial community profiling
-
Franzosa EA, Hsu T, Sirota-Madi A, Shafquat A, Abu-AliG, Morgan XC, et al. Sequencing and beyond: integrating molecular òmics' for microbial community profiling. Nat Rev Microbiol 2015;13:360-72.
-
(2015)
Nat Rev Microbiol
, vol.13
, pp. 360-372
-
-
Franzosa, E.A.1
Hsu, T.2
Sirota-Madi, A.3
Shafquat, A.4
Abu-Ali, G.5
Morgan, X.C.6
-
10
-
-
84881128137
-
Investigating the impact of storage conditions on microbial community composition in soil samples
-
Rubin BE, Gibbons SM, Kennedy S, Hampton-Marcell J, Owens S, Gilbert JA. Investigating the impact of storage conditions on microbial community composition in soil samples. PLoS One 2013;8:e70460.
-
(2013)
PLoS One
, vol.8
, pp. e70460
-
-
Rubin, B.E.1
Gibbons, S.M.2
Kennedy, S.3
Hampton-Marcell, J.4
Owens, S.5
Gilbert, J.A.6
-
11
-
-
77951941062
-
Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples
-
Lauber CL, Zhou N, Gordon JI, Knight R, Fierer N. Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples. FEMS Microbiol Lett 2010;307:80-6.
-
(2010)
FEMS Microbiol Lett
, vol.307
, pp. 80-86
-
-
Lauber, C.L.1
Zhou, N.2
Gordon, J.I.3
Knight, R.4
Fierer, N.5
-
12
-
-
84861385390
-
Comparison of storage conditions for human vaginal microbiome studies
-
Bai G, Gajer P, Nandy M, Ma B, Yang H, Sakamoto J, et al. Comparison of storage conditions for human vaginal microbiome studies. PLoS One 2012;7:e36934.
-
(2012)
PLoS One
, vol.7
, pp. e36934
-
-
Bai, G.1
Gajer, P.2
Nandy, M.3
Ma, B.4
Yang, H.5
Sakamoto, J.6
-
13
-
-
84899898655
-
Comparison of methods for fecal microbiome biospecimen collection
-
Dominianni C, Wu J, Hayes RB, Ahn J. Comparison of methods for fecal microbiome biospecimen collection. BMC Microbiol 2014;14:103.
-
(2014)
BMC Microbiol
, vol.14
, pp. 103
-
-
Dominianni, C.1
Wu, J.2
Hayes, R.B.3
Ahn, J.4
-
14
-
-
84863981120
-
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
-
Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, et al. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J 2012;6:1621-4.
-
(2012)
ISME J
, vol.6
, pp. 1621-1624
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
Berg-Lyons, D.4
Huntley, J.5
Fierer, N.6
-
15
-
-
79959794996
-
The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010
-
Gilbert JA, Meyer F, Jansson J, Gordon J, Pace N, Tiedje J, et al. The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010. Stand Genomic Sci 2010;3:249-53.
-
(2010)
Stand Genomic Sci
, vol.3
, pp. 249-253
-
-
Gilbert, J.A.1
Meyer, F.2
Jansson, J.3
Gordon, J.4
Pace, N.5
Tiedje, J.6
-
16
-
-
79954506754
-
PrimerProspector: De novo design and taxonomic analysis of barcoded polymerase chain reaction primers
-
Walters WA, Caporaso JG, Lauber CL, Berg-Lyons D, Fierer N, Knight R. PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers. Bioinformatics 2011;27: 1159-61.
-
(2011)
Bioinformatics
, vol.27
, pp. 1159-1161
-
-
Walters, W.A.1
Caporaso, J.G.2
Lauber, C.L.3
Berg-Lyons, D.4
Fierer, N.5
Knight, R.6
-
17
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010;7:335-6.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
-
18
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 2006;72:5069-72.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
-
19
-
-
84865082160
-
Associatingmicrobiome compositionwith environmental covariates using generalized UniFrac distances
-
Chen J, Bittinger K, Charlson ES, Hoffmann C, Lewis J, Wu GD, et al. Associatingmicrobiome compositionwith environmental covariates using generalized UniFrac distances. Bioinformatics 2012;28:2106-13.
-
(2012)
Bioinformatics
, vol.28
, pp. 2106-2113
-
-
Chen, J.1
Bittinger, K.2
Charlson, E.S.3
Hoffmann, C.4
Lewis, J.5
Wu, G.D.6
-
20
-
-
0035133496
-
Fitting multivariate models tocommunity data: A comment on distance-based redundancy analysis
-
McArdle BH, Anderson MJ. Fitting multivariate models tocommunity data: a comment on distance-based redundancy analysis. Ecology 2001;82: 290-7.
-
(2001)
Ecology
, vol.82
, pp. 290-297
-
-
McArdle, B.H.1
Anderson, M.J.2
-
21
-
-
84928772254
-
Nationwide bowel cancer screening programme in England: Cohort study of lifestyle factors affecting participation and outcomes in women
-
Blanks RG, Benson VS, Alison R, Brown A, Reeves GK, Beral V, et al. Nationwide bowel cancer screening programme in England: cohort study of lifestyle factors affecting participation and outcomes in women. Br J Cancer 2015;112:1562-7.
-
(2015)
Br J Cancer
, vol.112
, pp. 1562-1567
-
-
Blanks, R.G.1
Benson, V.S.2
Alison, R.3
Brown, A.4
Reeves, G.K.5
Beral, V.6
-
22
-
-
84930763501
-
Adherence to and predictors of participation in colorectal cancer screening with faecal occult blood testing in Spain, 2009-2011
-
Ricardo-Rodrigues I, Jimenez-Garcia R, Hernandez-Barrera V, Carrasco- Garrido P, Jimenez-Trujillo I, Lopez-de-Andres A. Adherence to and predictors of participation in colorectal cancer screening with faecal occult blood testing in Spain, 2009-2011. Eur J Cancer Prev 2015;24:305-12.
-
(2015)
Eur J Cancer Prev
, vol.24
, pp. 305-312
-
-
Ricardo-Rodrigues, I.1
Jimenez-Garcia, R.2
Hernandez-Barrera, V.3
Carrasco-, G.P.4
Jimenez-Trujillo, I.5
Lopez-De-Andres, A.6
-
23
-
-
84863722897
-
The impact of population-based faecal occult blood test screening on colorectal cancer mortality: A matched cohort study
-
Libby G, Brewster DH, McClements PL, Carey FA, Black RJ, Birrell J, et al. The impact of population-based faecal occult blood test screening on colorectal cancer mortality: a matched cohort study. Br J Cancer 2012; 107:255-9.
-
(2012)
Br J Cancer
, vol.107
, pp. 255-259
-
-
Libby, G.1
Brewster, D.H.2
McClements, P.L.3
Carey, F.A.4
Black, R.J.5
Birrell, J.6
-
24
-
-
4444366153
-
Faecal occult-blood screening in Burgundy
-
Pignone M. Faecal occult-blood screening in Burgundy. Lancet 2004; 364:741-2.
-
(2004)
Lancet
, vol.364
, pp. 741-742
-
-
Pignone, M.1
-
25
-
-
0036102104
-
Noncryogenic preservation of mammalian tissues for DNA extraction: An assessment of storage methods
-
Kilpatrick CW. Noncryogenic preservation of mammalian tissues for DNA extraction: an assessment of storage methods. Biochem Genet 2002;40: 53-62.
-
(2002)
Biochem Genet
, vol.40
, pp. 53-62
-
-
Kilpatrick, C.W.1
-
26
-
-
84858709310
-
Freezing fecal samples prior to DNA extraction affects the Firmicutes to Bacteroidetes ratio determined by downstream quantitative PCR analysis
-
Bahl MI, Bergstrom A, Licht TR. Freezing fecal samples prior to DNA extraction affects the Firmicutes to Bacteroidetes ratio determined by downstream quantitative PCR analysis. FEMS Microbiol Lett 2012;329: 193-7.
-
(2012)
FEMS Microbiol Lett
, vol.329
, pp. 193-197
-
-
Bahl, M.I.1
Bergstrom, A.2
Licht, T.R.3
-
27
-
-
84896089558
-
The impact of different DNA extraction kits and laboratories upon the assessment of human gut microbiota composition by 16S rRNA gene sequencing
-
Kennedy NA, Walker AW, Berry SH, Duncan SH, Farquarson FM, Louis P, et al. The impact of different DNA extraction kits and laboratories upon the assessment of human gut microbiota composition by 16S rRNA gene sequencing. PLoS One 2014;9:e88982.
-
(2014)
PLoS One
, vol.9
, pp. e88982
-
-
Kennedy, N.A.1
Walker, A.W.2
Berry, S.H.3
Duncan, S.H.4
Farquarson, F.M.5
Louis, P.6
-
28
-
-
84904893889
-
Influence ofDNAextraction method, 16S rRNA targeted hypervariable regions, and sample origin on microbial diversity detected by 454 pyrosequencing in marine chemosynthetic ecosystems
-
Cruaud P, Vigneron A, Lucchetti-Miganeh C, Ciron PE, Godfroy A, Cambon-Bonavita MA. Influence ofDNAextraction method, 16S rRNA targeted hypervariable regions, and sample origin on microbial diversity detected by 454 pyrosequencing in marine chemosynthetic ecosystems. Appl Environ Microbiol 2014;80:4626-39.
-
(2014)
Appl Environ Microbiol
, vol.80
, pp. 4626-4639
-
-
Cruaud, P.1
Vigneron, A.2
Lucchetti-Miganeh, C.3
Ciron, P.E.4
Godfroy, A.5
Cambon-Bonavita, M.A.6
-
29
-
-
80055082991
-
On the suitability of short reads of 16S rRNA for phylogeny-based analyses in environmental surveys
-
Jeraldo P, Chia N, Goldenfeld N. On the suitability of short reads of 16S rRNA for phylogeny-based analyses in environmental surveys. Environ Microbiol 2011;13:3000-9.
-
(2011)
Environ Microbiol
, vol.13
, pp. 3000-3009
-
-
Jeraldo, P.1
Chia, N.2
Goldenfeld, N.3
-
30
-
-
35549007148
-
Short pyrosequencing reads suffice for accurate microbial community analysis
-
Liu Z, Lozupone C, Hamady M, Bushman FD, Knight R. Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic Acids Res 2007;35:e120.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. e120
-
-
Liu, Z.1
Lozupone, C.2
Hamady, M.3
Bushman, F.D.4
Knight, R.5
-
31
-
-
54549106898
-
Accurate taxonomyassignments from 16S rRNA sequences produced by highly parallel pyrosequencers
-
Liu Z, DeSantis TZ, Andersen GL, Knight R. Accurate taxonomyassignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucleic Acids Res 2008;36:e120.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. e120
-
-
Liu, Z.1
DeSantis, T.Z.2
Andersen, G.L.3
Knight, R.4
-
32
-
-
34147182303
-
A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria
-
Chakravorty S, Helb D, Burday M, Connell N, Alland D. A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria. J Microbiol Methods 2007;69:330-9.
-
(2007)
J Microbiol Methods
, vol.69
, pp. 330-339
-
-
Chakravorty, S.1
Helb, D.2
Burday, M.3
Connell, N.4
Alland, D.5
-
33
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 2007;73:5261-7.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
|