메뉴 건너뛰기




Volumn 30, Issue 3, 2018, Pages 717-736

RecQ helicases function in development, DNA repair, and gene targeting in Physcomitrella patens

Author keywords

[No Author keywords available]

Indexed keywords

PLANT PROTEIN; RECQ HELICASE;

EID: 85046054974     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.17.00632     Document Type: Article
Times cited : (32)

References (95)
  • 2
    • 0038575095 scopus 로고    scopus 로고
    • Arabidopsis RecQsim, a plant-specific member of the RecQ helicase family, can suppress the MMS hypersensitivity of the yeast sgs1 mutant
    • Bagherieh-Najjar, M.B., de Vries, O.M.H., Kroon, J.T.M., Wright, E.L., Elborough, K.M., Hille, J., and Dijkwel, P.P. (2003). Arabidopsis RecQsim, a plant-specific member of the RecQ helicase family, can suppress the MMS hypersensitivity of the yeast sgs1 mutant. Plant Mol. Biol. 52: 273–284.
    • (2003) Plant Mol. Biol. , vol.52 , pp. 273-284
    • Bagherieh-Najjar, M.B.1    de Vries, O.M.H.2    Kroon, J.T.M.3    Wright, E.L.4    Elborough, K.M.5    Hille, J.6    Dijkwel, P.P.7
  • 3
    • 30944466384 scopus 로고    scopus 로고
    • Arabidopsis RecQI4A suppresses homologous recombination and modulates DNA damage responses
    • Bagherieh-Najjar, M.B., de Vries, O.M.H., Hille, J., and Dijkwel, P.P. (2005). Arabidopsis RecQI4A suppresses homologous recombination and modulates DNA damage responses. Plant J. 43: 789–798.
    • (2005) Plant J , vol.43 , pp. 789-798
    • Bagherieh-Najjar, M.B.1    de Vries, O.M.H.2    Hille, J.3    Dijkwel, P.P.4
  • 4
    • 0032127849 scopus 로고    scopus 로고
    • Role of the human RAD51 protein in homologous recombination and double-stranded-break repair
    • Baumann, P., and West, S.C. (1998). Role of the human RAD51 protein in homologous recombination and double-stranded-break repair. Trends Biochem. Sci. 23: 247–251.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 247-251
    • Baumann, P.1    West, S.C.2
  • 6
    • 84919625474 scopus 로고    scopus 로고
    • Insights from the cold transcriptome of Physcomitrella patens: Global specialization pattern of conserved transcriptional regulators and identification of orphan genes involved in cold acclimation
    • Beike, A.K., Lang, D., Zimmer, A.D., Wüst, F., Trautmann, D., Wiedemann, G., Beyer, P., Decker, E.L., and Reski, R. (2015). Insights from the cold transcriptome of Physcomitrella patens: global specialization pattern of conserved transcriptional regulators and identification of orphan genes involved in cold acclimation. New Phytol. 205: 869–881.
    • (2015) New Phytol , vol.205 , pp. 869-881
    • Beike, A.K.1    Lang, D.2    Zimmer, A.D.3    Wüst, F.4    Trautmann, D.5    Wiedemann, G.6    Beyer, P.7    Decker, E.L.8    Reski, R.9
  • 8
    • 0036008293 scopus 로고    scopus 로고
    • Observation of polarity induction by cytochemical localization of phenylalkylamine-binding sites in regenerating protoplasts of the moss Physcomitrella patens
    • Bhatla, S.C., Kiessling, J., and Reski, R. (2002). Observation of polarity induction by cytochemical localization of phenylalkylamine-binding sites in regenerating protoplasts of the moss Physcomitrella patens. Protoplasma 219: 99–105.
    • (2002) Protoplasma , vol.219 , pp. 99-105
    • Bhatla, S.C.1    Kiessling, J.2    Reski, R.3
  • 9
    • 0042976435 scopus 로고    scopus 로고
    • Use of an inducible reporter gene system for the analysis of auxin distribution in the moss Physcomitrella patens
    • Bierfreund, N.M., Reski, R., and Decker, E.L. (2003). Use of an inducible reporter gene system for the analysis of auxin distribution in the moss Physcomitrella patens. Plant Cell Rep. 21: 1143–1152.
    • (2003) Plant Cell Rep , vol.21 , pp. 1143-1152
    • Bierfreund, N.M.1    Reski, R.2    Decker, E.L.3
  • 12
    • 67650757433 scopus 로고    scopus 로고
    • TrimAl: A tool for automated alignment trimming in large-scale phylogenetic analyses
    • Capella-Gutiérrez, S., Silla-Martínez, J.M., and Gabaldón, T. (2009). trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25: 1972–1973.
    • (2009) Bioinformatics , vol.25 , pp. 1972-1973
    • Capella-Gutiérrez, S.1    Silla-Martínez, J.M.2    Gabaldón, T.3
  • 14
    • 0028009789 scopus 로고
    • Cellular responses to cisplatin. The roles of DNA-binding proteins and DNA repair
    • Chu, G. (1994). Cellular responses to cisplatin. The roles of DNA-binding proteins and DNA repair. J. Biol. Chem. 269: 787–790.
    • (1994) J. Biol. Chem. , vol.269 , pp. 787-790
    • Chu, G.1
  • 15
    • 0032447801 scopus 로고    scopus 로고
    • Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
    • Clough, S.J., and Bent, A.F. (1998). Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16: 735–743.
    • (1998) Plant J , vol.16 , pp. 735-743
    • Clough, S.J.1    Bent, A.F.2
  • 16
    • 84902187810 scopus 로고    scopus 로고
    • Human RecQ helicases in DNA repair, recombination, and replication
    • Croteau, D.L., Popuri, V., Opresko, P.L., and Bohr, V.A. (2014). Human RecQ helicases in DNA repair, recombination, and replication. Annu. Rev. Biochem. 83: 519–552.
    • (2014) Annu. Rev. Biochem. , vol.83 , pp. 519-552
    • Croteau, D.L.1    Popuri, V.2    Opresko, P.L.3    Bohr, V.A.4
  • 17
    • 84935913801 scopus 로고    scopus 로고
    • Gene targeting for precision glyco-engineering: Production of biopharmaceuticals devoid of plant-typical glycosylation in moss bioreactors
    • Decker, E.L., Wiedemann, G., and Reski, R. (2015). Gene targeting for precision glyco-engineering: production of biopharmaceuticals devoid of plant-typical glycosylation in moss bioreactors. Methods Mol. Biol. 1321: 213–224.
    • (2015) Methods Mol. Biol. , vol.1321 , pp. 213-224
    • Decker, E.L.1    Wiedemann, G.2    Reski, R.3
  • 18
    • 0020416863 scopus 로고
    • On the mechanism of reductive activation in the mode of action of some anticancer drugs
    • Favaudon, V. (1982). On the mechanism of reductive activation in the mode of action of some anticancer drugs. Biochimie 64: 457–475.
    • (1982) Biochimie , vol.64 , pp. 457-475
    • Favaudon, V.1
  • 19
    • 84976865403 scopus 로고    scopus 로고
    • The Pfam protein families database: Towards a more sustainable future
    • Finn, R.D., et al. (2016). The Pfam protein families database: towards a more sustainable future. Nucleic Acids Res. 44: D279–D285.
    • (2016) Nucleic Acids Res , vol.44 , pp. D279-D285
    • Finn, R.D.1
  • 21
    • 0032127686 scopus 로고    scopus 로고
    • Identification of a novel delta 6-acyl-group desaturase by targeted gene disruption in Physcomitrella patens
    • Girke, T., Schmidt, H., Zähringer, U., Reski, R., and Heinz, E. (1998). Identification of a novel delta 6-acyl-group desaturase by targeted gene disruption in Physcomitrella patens. Plant J. 15: 39–48.
    • (1998) Plant J , vol.15 , pp. 39-48
    • Girke, T.1    Schmidt, H.2    Zähringer, U.3    Reski, R.4    Heinz, E.5
  • 23
    • 0141920354 scopus 로고    scopus 로고
    • Comparing protein abundance and mRNA expression levels on a genomic scale
    • Greenbaum, D., Colangelo, C., Williams, K., and Gerstein, M. (2003). Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol. 4: 117.
    • (2003) Genome Biol , vol.4 , pp. 117
    • Greenbaum, D.1    Colangelo, C.2    Williams, K.3    Gerstein, M.4
  • 24
    • 0028500170 scopus 로고
    • The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation
    • Hajdukiewicz, P., Svab, Z., and Maliga, P. (1994). The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation. Plant Mol. Biol. 25: 989–994.
    • (1994) Plant Mol. Biol. , vol.25 , pp. 989-994
    • Hajdukiewicz, P.1    Svab, Z.2    Maliga, P.3
  • 25
    • 62549136610 scopus 로고    scopus 로고
    • Local cues and asymmetric cell divisions underpin body plan transitions in the moss Physcomitrella patens
    • Harrison, C.J., Roeder, A.H.K., Meyerowitz, E.M., and Langdale, J.A. (2009). Local cues and asymmetric cell divisions underpin body plan transitions in the moss Physcomitrella patens. Curr. Biol. 19: 461–471.
    • (2009) Curr. Biol. , vol.19 , pp. 461-471
    • Harrison, C.J.1    Roeder, A.H.K.2    Meyerowitz, E.M.3    Langdale, J.A.4
  • 26
    • 30944447473 scopus 로고    scopus 로고
    • The RecQ gene family in plants
    • Hartung, F., and Puchta, H. (2006). The RecQ gene family in plants. J. Plant Physiol. 163: 287–296.
    • (2006) J. Plant Physiol. , vol.163 , pp. 287-296
    • Hartung, F.1    Puchta, H.2
  • 27
    • 0034326274 scopus 로고    scopus 로고
    • Molecular charac-terisation of RecQ homologues in Arabidopsis thaliana
    • Hartung, F., Plchová, H., and Puchta, H. (2000). Molecular charac-terisation of RecQ homologues in Arabidopsis thaliana. Nucleic Acids Res. 28: 4275–4282.
    • (2000) Nucleic Acids Res , vol.28 , pp. 4275-4282
    • Hartung, F.1    Plchová, H.2    Puchta, H.3
  • 28
    • 33750025126 scopus 로고    scopus 로고
    • The role of AtMUS81 in DNA repair and its genetic interaction with the helicase AtRecQ4A
    • Hartung, F., Suer, S., Bergmann, T., and Puchta, H. (2006). The role of AtMUS81 in DNA repair and its genetic interaction with the helicase AtRecQ4A. Nucleic Acids Res. 34: 4438–4448.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4438-4448
    • Hartung, F.1    Suer, S.2    Bergmann, T.3    Puchta, H.4
  • 29
    • 36749085205 scopus 로고    scopus 로고
    • Two closely related RecQ helicases have antagonistic roles in homologous recombination and DNA repair in Arabidopsis thaliana
    • Hartung, F., Suer, S., and Puchta, H. (2007). Two closely related RecQ helicases have antagonistic roles in homologous recombination and DNA repair in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 104: 18836–18841.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 18836-18841
    • Hartung, F.1    Suer, S.2    Puchta, H.3
  • 30
    • 58149144728 scopus 로고    scopus 로고
    • Topoisomerase 3α and RMI1 suppress somatic crossovers and are essential for resolution of meiotic recombination intermediates in Arabidopsis thaliana
    • Hartung, F., Suer, S., Knoll, A., Wurz-Wildersinn, R., and Puchta, H. (2008). Topoisomerase 3α and RMI1 suppress somatic crossovers and are essential for resolution of meiotic recombination intermediates in Arabidopsis thaliana. PLoS Genet. 4: e1000285.
    • (2008) Plos Genet , vol.4
    • Hartung, F.1    Suer, S.2    Knoll, A.3    Wurz-Wildersinn, R.4    Puchta, H.5
  • 31
    • 79251562870 scopus 로고    scopus 로고
    • The RecQ helicase AtRECQ4A is required to remove inter-chro-mosomal telomeric connections that arise during meiotic recombination in Arabidopsis
    • Higgins, J.D., Ferdous, M., Osman, K., and Franklin, F.C.H. (2011). The RecQ helicase AtRECQ4A is required to remove inter-chro-mosomal telomeric connections that arise during meiotic recombination in Arabidopsis. Plant J. 65: 492–502.
    • (2011) Plant J , vol.65 , pp. 492-502
    • Higgins, J.D.1    Ferdous, M.2    Osman, K.3    Franklin, F.C.H.4
  • 32
    • 84905115793 scopus 로고    scopus 로고
    • Large-scale gene expression profiling data for the model moss Physcomitrella patens aid understanding of developmental progression, culture and stress conditions
    • Hiss, M., et al. (2014). Large-scale gene expression profiling data for the model moss Physcomitrella patens aid understanding of developmental progression, culture and stress conditions. Plant J. 79: 530–539.
    • (2014) Plant J , vol.79 , pp. 530-539
    • Hiss, M.1
  • 33
    • 0036664929 scopus 로고    scopus 로고
    • Optimisation of a bioreactor culture of the moss Physcomitrella patens for mass production of protoplasts
    • Hohe, A., and Reski, R. (2002). Optimisation of a bioreactor culture of the moss Physcomitrella patens for mass production of protoplasts. Plant Sci. 163: 69–74.
    • (2002) Plant Sci , vol.163 , pp. 69-74
    • Hohe, A.1    Reski, R.2
  • 34
    • 18744414750 scopus 로고    scopus 로고
    • Day length and temperature strongly influence sexual reproduction and expression of a novel MADS-box gene in the moss Physcomitrella patens
    • Hohe, A., Rensing, S.A., Mildner, M., Lang, D., and Reski, R. (2002). Day length and temperature strongly influence sexual reproduction and expression of a novel MADS-box gene in the moss Physcomitrella patens. Plant Biol. (Stuttg.) 4: 595–602.
    • (2002) Plant Biol. (Stuttg.) , vol.4 , pp. 595-602
    • Hohe, A.1    Rensing, S.A.2    Mildner, M.3    Lang, D.4    Reski, R.5
  • 35
    • 1642514502 scopus 로고    scopus 로고
    • An improved and highly standardised transformation procedure allows efficient production of single and multiple targeted gene-knockouts in a moss, Physcomitrella patens
    • Hohe, A., Egener, T., Lucht, J.M., Holtorf, H., Reinhard, C., Schween, G., and Reski, R. (2004). An improved and highly standardised transformation procedure allows efficient production of single and multiple targeted gene-knockouts in a moss, Physcomitrella patens. Curr. Genet. 44: 339–347.
    • (2004) Curr. Genet. , vol.44 , pp. 339-347
    • Hohe, A.1    Egener, T.2    Lucht, J.M.3    Holtorf, H.4    Reinhard, C.5    Schween, G.6    Reski, R.7
  • 36
    • 85019166185 scopus 로고    scopus 로고
    • Microscopy of Physcomitrella patens sperm cells
    • Horst, N.A., and Reski, R. (2017). Microscopy of Physcomitrella patens sperm cells. Plant Methods 13: 33.
    • (2017) Plant Methods , vol.13 , pp. 33
    • Horst, N.A.1    Reski, R.2
  • 37
    • 84956871220 scopus 로고    scopus 로고
    • A single homeobox gene triggers phase transition, embryogenesis and asexual reproduction
    • Horst, N.A., Katz, A., Pereman, I., Decker, E.L., Ohad, N., and Reski, R. (2016). A single homeobox gene triggers phase transition, embryogenesis and asexual reproduction. Nat. Plants 2: 15209.
    • (2016) Nat. Plants , vol.2
    • Horst, N.A.1    Katz, A.2    Pereman, I.3    Decker, E.L.4    Ohad, N.5    Reski, R.6
  • 38
    • 80053213807 scopus 로고    scopus 로고
    • Physcomitrella cyclin-dependent kinase A links cell cycle reactivation to other cellular changes during reprogramming of leaf cells
    • Ishikawa, M., et al. (2011). Physcomitrella cyclin-dependent kinase A links cell cycle reactivation to other cellular changes during reprogramming of leaf cells. Plant Cell 23: 2924–2938.
    • (2011) Plant Cell , vol.23 , pp. 2924-2938
    • Ishikawa, M.1
  • 39
    • 77955591777 scopus 로고    scopus 로고
    • Hidden Markov model speed heuristic and iterative HMM search procedure
    • Johnson, L.S., Eddy, S.R., and Portugaly, E. (2010). Hidden Markov model speed heuristic and iterative HMM search procedure. BMC Bioinformatics 11: 431.
    • (2010) BMC Bioinformatics , vol.11 , pp. 431
    • Johnson, L.S.1    Eddy, S.R.2    Portugaly, E.3
  • 40
    • 33845653228 scopus 로고    scopus 로고
    • The mechanism of gene targeting in Physcomitrella patens: Homologous recombination, concatenation and multiple integration
    • Kamisugi, Y., Schlink, K., Rensing, S.A., Schween, G., von Stackelberg, M., Cuming, A.C., Reski, R., and Cove, D.J. (2006). The mechanism of gene targeting in Physcomitrella patens: homologous recombination, concatenation and multiple integration. Nucleic Acids Res. 34: 6205–6214.
    • (2006) Nucleic Acids Res , vol.34 , pp. 6205-6214
    • Kamisugi, Y.1    Schlink, K.2    Rensing, S.A.3    Schween, G.4    von Stackelberg, M.5    Cuming, A.C.6    Reski, R.7    Cove, D.J.8
  • 42
    • 84984829468 scopus 로고    scopus 로고
    • The transcriptional response to DNA-double-strand breaks in Physcomitrella patens
    • Kamisugi, Y., Whitaker, J.W., and Cuming, A.C. (2016). The transcriptional response to DNA-double-strand breaks in Physcomitrella patens. PLoS One 11: e0161204.
    • (2016) Plos One , vol.11
    • Kamisugi, Y.1    Whitaker, J.W.2    Cuming, A.C.3
  • 43
    • 85040861825 scopus 로고    scopus 로고
    • Ensembl Genomes 2018: An integrated omics infrastructure for non-vertebrate species
    • Kersey, P.J., et al. (2018). Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species. Nucleic Acids Res. 46: D802–D808.
    • (2018) Nucleic Acids Res , vol.46 , pp. D802-D808
    • Kersey, P.J.1
  • 44
    • 84901061167 scopus 로고    scopus 로고
    • The RTR complex as caretaker of genome stability and its unique meiotic function in plants
    • Knoll, A., Schröpfer, S., and Puchta, H. (2014). The RTR complex as caretaker of genome stability and its unique meiotic function in plants. Front. Plant Sci. 5: 33.
    • (2014) Front. Plant Sci. , vol.5 , pp. 33
    • Knoll, A.1    Schröpfer, S.2    Puchta, H.3
  • 45
    • 84893467168 scopus 로고    scopus 로고
    • Eight types of stem cells in the life cycle of the moss Physcomitrella patens
    • Kofuji, R., and Hasebe, M. (2014). Eight types of stem cells in the life cycle of the moss Physcomitrella patens. Curr. Opin. Plant Biol. 17: 13–21.
    • (2014) Curr. Opin. Plant Biol. , vol.17 , pp. 13-21
    • Kofuji, R.1    Hasebe, M.2
  • 49
    • 84877668682 scopus 로고    scopus 로고
    • DNA replication arrest leads to enhanced homologous recombination and cell death in meristems of rice OsRecQl4 mutants
    • Kwon, Y.-I., Abe, K., Endo, M., Osakabe, K., Ohtsuki, N., Nishizawa-Yokoi, A., Tagiri, A., Saika, H., and Toki, S. (2013). DNA replication arrest leads to enhanced homologous recombination and cell death in meristems of rice OsRecQl4 mutants. BMC Plant Biol. 13: 62.
    • (2013) BMC Plant Biol , vol.13 , pp. 62
    • Kwon, Y.-I.1    Abe, K.2    Endo, M.3    Osakabe, K.4    Ohtsuki, N.5    Nishizawa-Yokoi, A.6    Tagiri, A.7    Saika, H.8    Toki, S.9
  • 50
    • 53149152557 scopus 로고    scopus 로고
    • Exploring plant biodiversity: The Physcomitrella genome and beyond
    • Lang, D., Zimmer, A.D., Rensing, S.A., and Reski, R. (2008). Exploring plant biodiversity: the Physcomitrella genome and beyond. Trends Plant Sci. 13: 542–549.
    • (2008) Trends Plant Sci , vol.13 , pp. 542-549
    • Lang, D.1    Zimmer, A.D.2    Rensing, S.A.3    Reski, R.4
  • 51
    • 85040818508 scopus 로고    scopus 로고
    • The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution
    • Lang, D., et al. (2018). The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution. Plant J. 93: 515–533.
    • (2018) Plant J , vol.93 , pp. 515-533
    • Lang, D.1
  • 52
    • 84911429068 scopus 로고    scopus 로고
    • AliView: A fast and lightweight alignment viewer and editor for large datasets
    • Larsson, A. (2014). AliView: a fast and lightweight alignment viewer and editor for large datasets. Bioinformatics 30: 3276–3278.
    • (2014) Bioinformatics , vol.30 , pp. 3276-3278
    • Larsson, A.1
  • 54
    • 78649518584 scopus 로고    scopus 로고
    • RAD5A, RECQ4A, and MUS81 have specific functions in homologous recombination and define different pathways of DNA repair in Arabidopsis thaliana
    • Mannuss, A., Dukowic-Schulze, S., Suer, S., Hartung, F., Pacher, M., and Puchta, H. (2010). RAD5A, RECQ4A, and MUS81 have specific functions in homologous recombination and define different pathways of DNA repair in Arabidopsis thaliana. Plant Cell 22: 3318– 3330.
    • (2010) Plant Cell , vol.22 , pp. 3318-3330
    • Mannuss, A.1    Dukowic-Schulze, S.2    Suer, S.3    Hartung, F.4    Pacher, M.5    Puchta, H.6
  • 55
    • 37249089739 scopus 로고    scopus 로고
    • Differential requirements for RAD51 in Physcomitrella patens and Arabidopsis thaliana development and DNA damage repair
    • Markmann-Mulisch, U., Wendeler, E., Zobell, O., Schween, G., Steinbiss, H.-H., and Reiss, B. (2007). Differential requirements for RAD51 in Physcomitrella patens and Arabidopsis thaliana development and DNA damage repair. Plant Cell 19: 3080–3089.
    • (2007) Plant Cell , vol.19 , pp. 3080-3089
    • Markmann-Mulisch, U.1    Wendeler, E.2    Zobell, O.3    Schween, G.4    Steinbiss, H.-H.5    Reiss, B.6
  • 56
    • 84909590553 scopus 로고    scopus 로고
    • Data access for the 1,000 Plants (1KP) project
    • Matasci, N., et al. (2014). Data access for the 1,000 Plants (1KP) project. Gigascience 3: 17.
    • (2014) Gigascience , vol.3 , pp. 17
    • Matasci, N.1
  • 57
    • 79951857925 scopus 로고    scopus 로고
    • DNA end resection: Unraveling the tail
    • Mimitou, E.P., and Symington, L.S. (2011). DNA end resection: Unraveling the tail. DNA Repair 10: 344–348.
    • (2011) DNA Repair , vol.10 , pp. 344-348
    • Mimitou, E.P.1    Symington, L.S.2
  • 58
    • 1042279123 scopus 로고    scopus 로고
    • Inter-chromatid and interhomolog recombination in Arabidopsis thaliana
    • Molinier, J., Ries, G., Bonhoeffer, S., and Hohn, B. (2004). Inter-chromatid and interhomolog recombination in Arabidopsis thaliana. Plant Cell 16: 342–352.
    • (2004) Plant Cell , vol.16 , pp. 342-352
    • Molinier, J.1    Ries, G.2    Bonhoeffer, S.3    Hohn, B.4
  • 59
    • 85050079754 scopus 로고    scopus 로고
    • Mitochondrial dynamics and the ER: The plant perspective
    • Mueller, S.J., and Reski, R. (2015). Mitochondrial dynamics and the ER: the plant perspective. Front. Cell Dev. Biol. 3: 78.
    • (2015) Front. Cell Dev. Biol. , vol.3 , pp. 78
    • Mueller, S.J.1    Reski, R.2
  • 60
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman, S.B., and Wunsch, C.D. (1970). A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48: 443–453.
    • (1970) J. Mol. Biol. , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 61
    • 84896047488 scopus 로고    scopus 로고
    • A single CMT methyl-transferase homolog is involved in CHG DNA methylation and development of Physcomitrella patens
    • Noy-Malka, C., Yaari, R., Itzhaki, R., Mosquna, A., Auerbach Gershovitz, N., Katz, A., and Ohad, N. (2014). A single CMT methyl-transferase homolog is involved in CHG DNA methylation and development of Physcomitrella patens. Plant Mol. Biol. 84: 719–735.
    • (2014) Plant Mol. Biol. , vol.84 , pp. 719-735
    • Noy-Malka, C.1    Yaari, R.2    Itzhaki, R.3    Mosquna, A.4    Auerbach Gershovitz, N.5    Katz, A.6    Ohad, N.7
  • 62
    • 84939168822 scopus 로고    scopus 로고
    • Ultra-large alignments using phylogeny-aware profiles
    • Nguyen, N.P., Mirarab, S., Kumar, K., and Warnow, T. (2015). Ultra-large alignments using phylogeny-aware profiles. Genome Biol. 16: 124.
    • (2015) Genome Biol , vol.16 , pp. 124
    • Nguyen, N.P.1    Mirarab, S.2    Kumar, K.3    Warnow, T.4
  • 63
    • 70349507539 scopus 로고    scopus 로고
    • A polycomb repressive complex 2 gene regulates apogamy and gives evolutionary insights into early land plant evolution
    • Okano, Y., Aono, N., Hiwatashi, Y., Murata, T., Nishiyama, T., Ishikawa, T., Kubo, M., and Hasebe, M. (2009). A polycomb repressive complex 2 gene regulates apogamy and gives evolutionary insights into early land plant evolution. Proc. Natl. Acad. Sci. USA 106: 16321–16326.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 16321-16326
    • Okano, Y.1    Aono, N.2    Hiwatashi, Y.3    Murata, T.4    Nishiyama, T.5    Ishikawa, T.6    Kubo, M.7    Hasebe, M.8
  • 65
    • 79953254847 scopus 로고    scopus 로고
    • Journey through the past: 150 million years of plant genome evolution
    • Proost, S., Pattyn, P., Gerats, T., and Van de Peer, Y. (2011). Journey through the past: 150 million years of plant genome evolution. Plant J. 66: 58–65.
    • (2011) Plant J , vol.66 , pp. 58-65
    • Proost, S.1    Pattyn, P.2    Gerats, T.3    van De Peer, Y.4
  • 67
    • 37849032457 scopus 로고    scopus 로고
    • The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants
    • Rensing, S.A., et al. (2008). The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 319: 64–69.
    • (2008) Science , vol.319 , pp. 64-69
    • Rensing, S.A.1
  • 68
    • 0000351648 scopus 로고    scopus 로고
    • Physcomitrella and Arabidopsis: The David and Goliath of reverse genetics
    • Reski, R. (1998a). Physcomitrella and Arabidopsis: the David and Goliath of reverse genetics. Trends Plant Sci. 3: 209–210.
    • (1998) Trends Plant Sci , vol.3 , pp. 209-210
    • Reski, R.1
  • 69
    • 0031930234 scopus 로고    scopus 로고
    • Development, genetics and molecular biology of mosses
    • Reski, R. (1998b). Development, genetics and molecular biology of mosses. Bot. Acta 111: 1–15.
    • (1998) Bot. Acta , vol.111 , pp. 1-15
    • Reski, R.1
  • 70
    • 0001693751 scopus 로고
    • Induction of budding on chlor-onemata and caulonemata of the moss, Physcomitrella patens, using isopentenyladenine
    • Reski, R., and Abel, W.O. (1985). Induction of budding on chlor-onemata and caulonemata of the moss, Physcomitrella patens, using isopentenyladenine. Planta 165: 354–358.
    • (1985) Planta , vol.165 , pp. 354-358
    • Reski, R.1    Abel, W.O.2
  • 71
    • 84942192711 scopus 로고    scopus 로고
    • Moss-made pharmaceuticals: From bench to bedside
    • Reski, R., Parsons, J., and Decker, E.L. (2015). Moss-made pharmaceuticals: from bench to bedside. Plant Biotechnol. J. 13: 1191–1198.
    • (2015) Plant Biotechnol. J. , vol.13 , pp. 1191-1198
    • Reski, R.1    Parsons, J.2    Decker, E.L.3
  • 72
    • 84994339088 scopus 로고    scopus 로고
    • The RTR complex partner RMI2 and the DNA helicase RTEL1 are both independently involved in preserving the stability of 45S rDNA repeats in Arabidopsis thaliana
    • Röhrig, S., Schröpfer, S., Knoll, A., and Puchta, H. (2016). The RTR complex partner RMI2 and the DNA helicase RTEL1 are both independently involved in preserving the stability of 45S rDNA repeats in Arabidopsis thaliana. PLoS Genet. 12: e1006394.
    • (2016) Plos Genet , vol.12
    • Röhrig, S.1    Schröpfer, S.2    Knoll, A.3    Puchta, H.4
  • 75
    • 84896724870 scopus 로고    scopus 로고
    • Defining the roles of the N-terminal region and the helicase activity of RECQ4A in DNA repair and homologous recombination in Arabidopsis
    • Schröpfer, S., Kobbe, D., Hartung, F., Knoll, A., and Puchta, H. (2014). Defining the roles of the N-terminal region and the helicase activity of RECQ4A in DNA repair and homologous recombination in Arabidopsis. Nucleic Acids Res. 42: 1684–1697.
    • (2014) Nucleic Acids Res , vol.42 , pp. 1684-1697
    • Schröpfer, S.1    Kobbe, D.2    Hartung, F.3    Knoll, A.4    Puchta, H.5
  • 76
    • 84954367511 scopus 로고    scopus 로고
    • Spatio-temporal patterning of arginyl-tRNA protein transferase (ATE) contributes to gametophytic development in a moss
    • Schuessele, C., Hoernstein, S.N.W., Mueller, S.J., Rodriguez- Franco, M., Lorenz, T., Lang, D., Igloi, G.L., and Reski, R. (2016). Spatio-temporal patterning of arginyl-tRNA protein transferase (ATE) contributes to gametophytic development in a moss. New Phytol. 209: 1014–1027.
    • (2016) New Phytol , vol.209 , pp. 1014-1027
    • Schuessele, C.1    Hoernstein, S.N.W.2    Mueller, S.J.3    Rodriguez-Franco, M.4    Lorenz, T.5    Lang, D.6    Igloi, G.L.7    Reski, R.8
  • 77
    • 0003222478 scopus 로고    scopus 로고
    • High-throughput-PCR screen of 15,000 transgenic Physcomitrella plants
    • Schween, G., Fleig, S., and Reski, R. (2002). High-throughput-PCR screen of 15,000 transgenic Physcomitrella plants. Plant Mol. Biol. Report. 20: 43–47.
    • (2002) Plant Mol. Biol. Report. , vol.20 , pp. 43-47
    • Schween, G.1    Fleig, S.2    Reski, R.3
  • 78
    • 0242499974 scopus 로고    scopus 로고
    • Unique tissue-specific cell cycle in Physcomitrella
    • Schween, G., Gorr, G., Hohe, A., and Reski, R. (2003a). Unique tissue-specific cell cycle in Physcomitrella. Plant Biol. (Stuttg.) 5: 50–58.
    • (2003) Plant Biol. (Stuttg.) , vol.5 , pp. 50-58
    • Schween, G.1    Gorr, G.2    Hohe, A.3    Reski, R.4
  • 79
    • 0037329261 scopus 로고    scopus 로고
    • Effects of nutrients, cell density and culture techniques on protoplast regeneration and early protonema development in a moss, Physcomitrella patens
    • Schween, G., Hohe, A., Koprivova, A., and Reski, R. (2003b). Effects of nutrients, cell density and culture techniques on protoplast regeneration and early protonema development in a moss, Physcomitrella patens. J. Plant Physiol. 160: 209–212.
    • (2003) J. Plant Physiol. , vol.160 , pp. 209-212
    • Schween, G.1    Hohe, A.2    Koprivova, A.3    Reski, R.4
  • 80
    • 85046152953 scopus 로고    scopus 로고
    • Effect of ploidy level on growth, differentiation and phenotype in Physcomitrella patens
    • Schween, G., Hohe, A., Schulte, J., and Reski, R. (2005). Effect of ploidy level on growth, differentiation and phenotype in Physcomitrella patens. Plant Cell Rep. 23: 513–521.
    • (2005) Plant Cell Rep , vol.23 , pp. 513-521
    • Schween, G.1    Hohe, A.2    Schulte, J.3    Reski, R.4
  • 81
    • 24744454355 scopus 로고    scopus 로고
    • High-frequency gene targeting in Arabidopsis plants expressing the yeast RAD54 gene
    • Shaked, H., Melamed-Bessudo, C., and Levy, A.A. (2005). High-frequency gene targeting in Arabidopsis plants expressing the yeast RAD54 gene. Proc. Natl. Acad. Sci. USA 102: 12265–12269.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 12265-12269
    • Shaked, H.1    Melamed-Bessudo, C.2    Levy, A.A.3
  • 82
    • 84899553363 scopus 로고    scopus 로고
    • RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
    • Stamatakis, A. (2014). RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312–1313.
    • (2014) Bioinformatics , vol.30 , pp. 1312-1313
    • Stamatakis, A.1
  • 83
    • 0032516067 scopus 로고    scopus 로고
    • Plant nuclear gene knockout reveals a role in plastid division for the homolog of the bacterial cell division protein FtsZ, an ancestral tubulin
    • Strepp, R., Scholz, S., Kruse, S., Speth, V., and Reski, R. (1998). Plant nuclear gene knockout reveals a role in plastid division for the homolog of the bacterial cell division protein FtsZ, an ancestral tubulin. Proc. Natl. Acad. Sci. USA 95: 4368–4373.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 4368-4373
    • Strepp, R.1    Scholz, S.2    Kruse, S.3    Speth, V.4    Reski, R.5
  • 84
    • 33749037701 scopus 로고    scopus 로고
    • Mechanism of homologous recombination: Mediators and helicases take on regulatory functions
    • Sung, P., and Klein, H. (2006). Mechanism of homologous recombination: mediators and helicases take on regulatory functions. Nat. Rev. Mol. Cell Biol. 7: 739–750.
    • (2006) Nat. Rev. Mol. Cell Biol. , vol.7 , pp. 739-750
    • Sung, P.1    Klein, H.2
  • 85
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments
    • Suyama, M., Torrents, D., and Bork, P. (2006). PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res. 34: W609–W612.
    • (2006) Nucleic Acids Res , vol.34 , pp. W609-W612
    • Suyama, M.1    Torrents, D.2    Bork, P.3
  • 87
    • 2442708120 scopus 로고    scopus 로고
    • High-throughput fluorescent tagging of full-length Arabidopsis gene products in planta
    • Tian, G.W., et al. (2004). High-throughput fluorescent tagging of full-length Arabidopsis gene products in planta. Plant Physiol. 135: 25–38.
    • (2004) Plant Physiol , vol.135 , pp. 25-38
    • Tian, G.W.1
  • 88
    • 31544454209 scopus 로고    scopus 로고
    • MSH2 is essential for the preservation of genome integrity and prevents homeologous recombination in the moss Physcomitrella patens
    • Trouiller, B., Schaefer, D.G., Charlot, F., and Nogué, F. (2006). MSH2 is essential for the preservation of genome integrity and prevents homeologous recombination in the moss Physcomitrella patens. Nucleic Acids Res. 34: 232–242.
    • (2006) Nucleic Acids Res , vol.34 , pp. 232-242
    • Trouiller, B.1    Schaefer, D.G.2    Charlot, F.3    Nogué, F.4
  • 89
    • 0029002965 scopus 로고
    • Sgs1: A eukaryotic homolog of E. coli RecQ that interacts with topoisomerase II in vivo and is required for faithful chromosome segregation
    • Watt, P.M., Louis, E.J., Borts, R.H., and Hickson, I.D. (1995). Sgs1: a eukaryotic homolog of E. coli RecQ that interacts with topoisomerase II in vivo and is required for faithful chromosome segregation. Cell 81: 253–260.
    • (1995) Cell , vol.81 , pp. 253-260
    • Watt, P.M.1    Louis, E.J.2    Borts, R.H.3    Hickson, I.D.4
  • 90
    • 84922726626 scopus 로고    scopus 로고
    • Recombination products suggest the frequent occurrence of aberrant gene replacement in the moss Physcomitrella patens
    • Wendeler, E., Zobell, O., Chrost, B., and Reiss, B. (2015). Recombination products suggest the frequent occurrence of aberrant gene replacement in the moss Physcomitrella patens. Plant J. 81: 548–558.
    • (2015) Plant J , vol.81 , pp. 548-558
    • Wendeler, E.1    Zobell, O.2    Chrost, B.3    Reiss, B.4
  • 91
    • 77952957983 scopus 로고    scopus 로고
    • Targeted knock-out of a gene encoding sulfite reductase in the moss Physcomitrella patens affects gametophytic and sporophytic development
    • Wiedemann, G., Hermsen, C., Melzer, M., Büttner-Mainik, A., Rennenberg, H., Reski, R., and Kopriva, S. (2010). Targeted knock-out of a gene encoding sulfite reductase in the moss Physcomitrella patens affects gametophytic and sporophytic development. FEBS Lett. 584: 2271–2278.
    • (2010) FEBS Lett , vol.584 , pp. 2271-2278
    • Wiedemann, G.1    Hermsen, C.2    Melzer, M.3    Büttner-Mainik, A.4    Rennenberg, H.5    Reski, R.6    Kopriva, S.7
  • 92
    • 0032555220 scopus 로고    scopus 로고
    • Bloom’s and Werner’s syndrome genes suppress hyperrecombination in yeast sgs1 mutant: Implication for genomic instability in human diseases
    • Yamagata, K., Kato, J., Shimamoto, A., Goto, M., Furuichi, Y., and Ikeda, H. (1998). Bloom’s and Werner’s syndrome genes suppress hyperrecombination in yeast sgs1 mutant: implication for genomic instability in human diseases. Proc. Natl. Acad. Sci. USA 95: 8733– 8738.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 8733-8738
    • Yamagata, K.1    Kato, J.2    Shimamoto, A.3    Goto, M.4    Furuichi, Y.5    Ikeda, H.6
  • 93
    • 84976870685 scopus 로고    scopus 로고
    • Ensembl 2016
    • Yates, A., et al. (2016). Ensembl 2016. Nucleic Acids Res. 44 (D1): D710–D716.
    • (2016) Nucleic Acids Res , vol.44 , Issue.D1 , pp. D710-D716
    • Yates, A.1
  • 94
    • 84988637625 scopus 로고    scopus 로고
    • Ggtree: An r package for visualization and annotation of phylogenetic trees with their covariates and other associated data
    • Yu, G., Smith, D.K., Zhu, H., Guan, Y., and Lam, T.T.-Y. (2017). ggtree: an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods Ecol. Evol. 8: 28–36.
    • (2017) Methods Ecol. Evol. , vol.8 , pp. 28-36
    • Yu, G.1    Smith, D.K.2    Zhu, H.3    Guan, Y.4    Lam, T.T.-Y.5
  • 95
    • 84880334849 scopus 로고    scopus 로고
    • Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions
    • Zimmer, A.D., Lang, D., Buchta, K., Rombauts, S., Nishiyama, T., Hasebe, M., Van de Peer, Y., Rensing, S.A., and Reski, R. (2013). Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions. BMC Genomics 14: 498.
    • (2013) BMC Genomics , vol.14 , pp. 498
    • Zimmer, A.D.1    Lang, D.2    Buchta, K.3    Rombauts, S.4    Nishiyama, T.5    Hasebe, M.6    van De Peer, Y.7    Rensing, S.A.8    Reski, R.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.