Characterization of four RecQ homologues from rice (Oryza sativa L. cv. Nipponbare)

Biochemical and Biophysical Research Communications

Volumn 345, Issue 4, 2006, Pages 1283-1291

  Saotome, Ai ^a   Kimura, Seisuke ^b   Mori, Yoko ^a   Uchiyama, Yukinobu ^a   Morohashi, Kengo ^a   Sakaguchi, Kengo ^a  

^a TOKYO UNIVERSITY OF SCIENCE   (Japan)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Helicase; OsRecQ helicase genes; Plastid specific DNA repair system; RecQ

Indexed keywords

BLEOMYCIN; HYBRID PROTEIN; HYDROGEN PEROXIDE; MITOMYCIN C; RECQ HELICASE;

ARTICLE; CELL DIFFERENTIATION; CELL NUCLEUS; CELL SPECIFICITY; CONTROLLED STUDY; DNA DAMAGE; DNA REPAIR; GENETIC TRANSCRIPTION; LIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT CELL; PLANT TISSUE; PLASTID; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FAMILY; PROTEIN FUNCTION; RICE; SEQUENCE HOMOLOGY;

ADENOSINE TRIPHOSPHATASES; AMINO ACID SEQUENCE; BLEOMYCIN; CLONING, MOLECULAR; DNA DAMAGE; DNA HELICASES; DNA REPAIR; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; GREEN FLUORESCENT PROTEINS; HYDROGEN PEROXIDE; IN SITU HYBRIDIZATION; ISOENZYMES; METHYL METHANESULFONATE; MICROSCOPY, FLUORESCENCE; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PHYLOGENY; PLANT PROTEINS; RECQ HELICASES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

ORYZA SATIVA;

EID: 33744546016     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2006.04.134     Document Type: Article

References (43)

1. Chakraverty R.K., and Hickson I.D. Defending genome integrity during DNA replication: a proposed role for RecQ family helicases. Bioessays 21 (1999) 286-294
2. Karow J.K., Wu L., and Hickson I.D. RecQ family helicases: roles in cancer and aging. Curr. Opin. Genet. Dev. 10 (2000) 32-38
3. Shen J.C., and Loeb L.A. The Werner syndrome gene: the molecular basis of RecQ helicase-deficiency diseases. Trends Genet. 16 (2000) 213-220
4. Ellis N.A., Groden J., Ye T.Z., Straughen J., Lennon D.J., Ciocci S., Proytcheva M., and German J. The Bloom's syndrome gene product is homologous to RecQ helicases. Cell 83 (1995) 655-666
5. Gangloff S., McDonald J.P., Bendixen C., Arthur L., and Rothstein R. The yeast type I topoisomerase Top3 interacts with Sgs1, a DNA helicase homolog: a potential eukaryotic reverse gyrase. Mol. Cell Biol. 14 (1994) 8391-8398
6. Hu Y., Lu X., Barnes E., Yan M., Lou H., and Luo G. Recql5 and Blm RecQ DNA helicases have nonredundant roles in suppressing crossovers. Mol. Cell Biol. 25 (2005) 3431-3442
7. Jeong S.M., Kawasaki K., Juni N., and Shibata T. Identification of Drosophila melanogaster RECQE as a member of a new family of RecQ homologues that is preferentially expressed in early embryos. Mol. Gen. Genet. 263 (2000) 183-193
8. Kitao S., Ohsugi I., Ichikawa K., Goto M., Furuichi Y., and Shimamoto A. Cloning of two new human helicase genes of the RecQ family: biological significance of multiple species in higher eukaryotes. Genomics 54 (1998) 443-452
9. Kusano K., Berres M.E., and Engels W.R. Evolution of the RECQ family of helicases: a Drosophila homolog, Dmblm, is similar to the human bloom syndrome gene. Genetics 151 (1999) 1027-1039
10. Li H.Q., Terada R., Li M.R., and Iida S. RecQ helicase enhances homologous recombination in plants. FEBS Lett. 574 (2004) 151-155
11. Murray J.M., Lindsay H.D., Munday C.A., and Carr A.M. Role of Schizosaccharomyces pombe RecQ homolog, recombination, and checkpoint genes in UV damage tolerance. Mol. Cell Biol. 17 (1997) 6868-6875
12. Puranam K.L., and Blackshear P.J. Role of Schizosaccharomyces pombe RecQ homolog, recombination, and checkpoint genes in UV damage tolerance. J. Biol. Chem. 269 (1994) 29838-29845
13. Sekelsky J.J., Brodsky M.H., Rubin G.M., and Hawley R.S. Drosophila and human RecQ5 exist in different isoforms generated by alternative splicing. Nucleic Acids Res. 27 (1999) 3762-3769
14. Stewart E., Chapman C.R., Al-Khodairy F., Carr A.M., and Enoch T. rqh1+, a fission yeast gene related to the Bloom's and Werner's syndrome genes, is required for reversible S phase arrest. EMBO J. 16 (1997) 2682-2692
15. Suzuki K., Kato A., Sakuraba Y., and Inoue H. Srs2 and RecQ homologs cooperate in mei-3-mediated homologous recombination repair of Neurospora crassa. Nucleic Acids Res. 33 (2005) 1848-1858
16. Yu C.E., Oshima J., Fu Y.H., Wijsman E.M., Hisama F., Alisch R., Matthews S., Nakura J., Miki T., Ouais S., Martin G.M., Mulligan J., and Schellenberg G.D. Positional cloning of the Werner's syndrome gene. Science 272 (1996) 258-262
17. Kitao S., Shimamoto A., Goto M., Miller R.W., Smithson W.A., Lindor N.M., and Furuichi Y. Mutations in RECQL4 cause a subset of cases of Rothmund-Thomson syndrome. Nat. Genet. 22 (1999) 82-84
18. Bagherieh-Najjar M.B., de Vries O.M., Hille J., and Dijkwel P.P. Arabidopsis RecQI4A suppresses homologous recombination and modulates DNA damage responses. Plant J. 43 (2005) 789-798
19. Bagherieh-Najjar M.B., de Vries O.M., Kroon J.T., Wright E.L., Elborough K.M., Hille J., and Dijkwel P.P. Arabidopsis RecQsim, a plant-specific member of the RecQ helicase family, can suppress the MMS hypersensitivity of the yeast sgs1 mutant. Plant Mol. Biol. 52 (2003) 273-284
20. Britt A.B. Repair of DNA damage induced by ultraviolet radiation. Plant Physiol. 108 (1995) 891-896
21. Hartung F., Plchova H., and Puchta H. Molecular characterisation of RecQ homologues in Arabidopsis thaliana. Nucleic Acids Res. 28 (2000) 4275-4282
22. Hays J.B. Arabidopsis thaliana, a versatile model system for study of eukaryotic genome-maintenance functions. DNA Repair (Amst.) 1 (2002) 579-600
23. Kimura S., Furukawa T., Kasai N., Mori Y., Kitamoto H.K., Sugawara F., Hashimoto J., and Sakaguchi K. Functional characterization of two flap endonuclease-1 homologues in rice. Gene 314 (2003) 63-71
24. Kimura S., Ishibashi T., Hatanaka M., Sakakibara Y., Hashimoto J., and Sakaguchi K. Molecular cloning and characterization of a plant homologue of the origin recognition complex 1 (ORC1). Plant Sci. 158 (2000) 33-39
25. Kimura S., and Sakaguchi K. DNA repair in plants. Chem. Rev. 106 (2006) 753-766
26. Kimura S., Saotome A., Uchiyama Y., Mori Y., Tahira Y., and Sakaguchi K. The expression of the rice (Oryza sativa L.) homologue of Snm1 is induced by DNA damages. Biochem. Biophys. Res. Commun. 329 (2005) 668-672
27. Kimura S., Tahira Y., Ishibashi T., Mori Y., Mori T., Hashimoto J., and Sakaguchi K. DNA repair in higher plants; photoreactivation is the major DNA repair pathway in non-proliferating cells while excision repair (nucleotide excision repair and base excision repair) is active in proliferating cells. Nucleic Acids Res. 32 (2004) 2760-2767
28. Kimura S., Uchiyama Y., Kasai N., Namekawa S., Saotome A., Ueda T., Ando T., Ishibashi T., Oshige M., Furukawa T., Yamamoto T., Hashimoto J., and Sakaguchi K. A novel DNA polymerase homologous to Escherichia coli DNA polymerase I from a higher plant, rice (Oryza sativa L.). Nucleic Acids Res. 30 (2002) 1585-1592
29. Kunz B.A., Anderson H.J., Osmond M.J., and Vonarx E.J. Components of nucleotide excision repair and DNA damage tolerance in Arabidopsis thaliana. Environ. Mol. Mutagen. 45 (2005) 115-127
30. Tuteja N., and Phan T.N. Inhibition of pea chloroplast DNA helicase unwinding and ATPase activities by DNA-interacting ligands. Biochem. Biophys. Res. Commun. 244 (1998) 861-867
31. Uchiyama Y., Kimura S., Yamamoto T., Ishibashi T., and Sakaguchi K. Plant DNA polymerase lambda, a DNA repair enzyme that functions in plant meristematic and meiotic tissues. Eur. J. Biochem. 271 (2004) 2799-2807
32. Vonarx E.J., Mitchell H.L., Karthikeyan R., Chatterjee I., and Kunz B.A. DNA repair in higher plants. Mutat. Res. 400 (1998) 187-200
33. Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N., Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T., Ohneda E., Yahagi W., Suzuki K., Li C.J., Ohtsuki K., Shishiki T., Otomo Y., Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y., Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M., Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R., Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M., Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K., Arakawa T., Fukuda S., Hara A., Hashizume W., Hayatsu N., Imotani K., Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N., Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T., Yoshino M., Hayashizaki Y., and Yasunishi A. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science 301 (2003) 376-379
34. 2+ influx and regulation of growth and development in rice. Plant Cell Physiol. 45 (2004) 693-702
35. Chiu W., Niwa Y., Zeng W., Hirano T., Kobayashi H., and Sheen J. Engineered GFP as a vital reporter in plants. Curr. Biol. 6 (1996) 325-330
36. Sato Y., Hong S.K., Tagiri A., Kitano H., Yamamoto N., Nagato Y., and Matsuoka M. A rice homeobox gene, OSH1, is expressed before organ differentiation in a specific region during early embryogenesis. Proc. Natl. Acad. Sci. USA 93 (1996) 8117-8122
37. Molinier J., Stamm M.E., and Hohn B. SNM-dependent recombinational repair of oxidatively induced DNA damage in Arabidopsis thaliana. EMBO Rep. 5 (2004) 994-999
38. Hartung F., and Puchta H. The RecQ gene family in plants. J. Plant Physiol. 163 (2006) 287-296
39. Molinier J., Ramos C., Fritsch O., and Hohn B. CENTRIN2 modulates homologous recombination and nucleotide excision repair in Arabidopsis. Plant Cell 16 (2004) 1633-1643
40. Mori Y., Kimura S., Saotome A., Kasai N., Sakaguchi N., Uchiyama Y., Ishibashi T., Yamamoto T., Chiku H., and Sakaguchi K. Plastid DNA polymerases from higher plants Arabidopsis thaliana. Biochem. Biophys. Res. Commun. 334 (2005) 43-50
41. Cerutti H., Johnson A.M., Boynton J.E., and Gillham N.W. Inhibition of chloroplast DNA recombination and repair by dominant negative mutants of Escherichia coli RecA. Mol. Cell. Biol. 15 (1995) 3003-3011
42. Cerutti H., Osman M., Grandoni P., and Jagendorf A.T. A homolog of Escherichia coli RecA protein in plastids of higher plants. Proc. Natl. Acad. Sci. USA 89 (1992) 8068-8072
43. Nakazato E., Fukuzawa H., Tabata S., Takahashi H., and Tanaka K. Identification and expression analysis of cDNA encoding a chloroplast recombination protein REC1, the chloroplast RecA homologue in Chlamydomonas reinhardtii. Biosci. Biotechnol. Biochem. 67 (2003) 2608-2613