-
1
-
-
0017404566
-
The isolation and preliminary characterisation of auxotrophic and analogue resistant mutants of the moss Physcomitrella patens
-
Ashton NW, Cove DJ (1977) The isolation and preliminary characterisation of auxotrophic and analogue resistant mutants of the moss Physcomitrella patens. Mol Gen Genet 154: 87-95.
-
(1977)
Mol Gen Genet
, vol.154
, pp. 87-95
-
-
Ashton, N.W.1
Cove, D.J.2
-
2
-
-
79955079070
-
Genome demethylation and imprinting in the endosperm
-
Bauer MJ, Fischer RL (2011) Genome demethylation and imprinting in the endosperm. Curr Opin Plant Biol 14(2): 162-167.
-
(2011)
Curr Opin Plant Biol
, vol.14
, Issue.2
, pp. 162-167
-
-
Bauer, M.J.1
Fischer, R.L.2
-
3
-
-
52349089796
-
Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana
-
Bernatavichute YV, Zhang X, Cokus S, Pellegrini M, Jacobsen SE (2008) Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoS ONE 3(9): e3156.
-
(2008)
PLoS ONE
, vol.3
, Issue.9
-
-
Bernatavichute, Y.V.1
Zhang, X.2
Cokus, S.3
Pellegrini, M.4
Jacobsen, S.E.5
-
4
-
-
0142152480
-
RNA interference in the moss Physcomitrella patens
-
Bezanilla M, Pan A, Quatrano RS (2003) RNA interference in the moss Physcomitrella patens. Plant Physiol 133(2): 470-474.
-
(2003)
Plant Physiol
, vol.133
, Issue.2
, pp. 470-474
-
-
Bezanilla, M.1
Pan, A.2
Quatrano, R.S.3
-
5
-
-
0347033302
-
Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation
-
Cao X, Aufsatz W, Zilberman D, Mette MF, Huang MS, Matzke M, Jacobsen SE (2003) Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr Biol 13(24): 2212-2217.
-
(2003)
Curr Biol
, vol.13
, Issue.24
, pp. 2212-2217
-
-
Cao, X.1
Aufsatz, W.2
Zilberman, D.3
Mette, M.F.4
Huang, M.S.5
Matzke, M.6
Jacobsen, S.E.7
-
6
-
-
0037058968
-
Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes
-
Cao X, Jacobsen SE (2002) Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc Natl Acad Sci USA 99(Suppl 4): 16491-16498.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.SUPPL. 4
, pp. 16491-16498
-
-
Cao, X.1
Jacobsen, S.E.2
-
7
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17(4): 540-552.
-
(2000)
Mol Biol Evol
, vol.17
, Issue.4
, pp. 540-552
-
-
Castresana, J.1
-
8
-
-
84861912630
-
Programming of DNA methylation patterns
-
Cedar H, Bergman Y (2012) Programming of DNA methylation patterns. Annu Rev Biochem 81: 97-117.
-
(2012)
Annu Rev Biochem
, vol.81
, pp. 97-117
-
-
Cedar, H.1
Bergman, Y.2
-
9
-
-
33750314083
-
TreeDyn: towards dynamic graphics and annotations for analyses of trees
-
Chevenet F, Brun C, Banuls AL, Jacq B, Christen R (2006) TreeDyn: towards dynamic graphics and annotations for analyses of trees. BMC Bioinformatics 7: 439.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 439
-
-
Chevenet, F.1
Brun, C.2
Banuls, A.L.3
Jacq, B.4
Christen, R.5
-
10
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pellegrini M, Jacobsen SE (2008) Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 452(7184): 215-219.
-
(2008)
Nature
, vol.452
, Issue.7184
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
Chen, Z.4
Merriman, B.5
Haudenschild, C.D.6
Pradhan, S.7
Nelson, S.F.8
Pellegrini, M.9
Jacobsen, S.E.10
-
11
-
-
29444435089
-
The moss Physcomitrella patens
-
Cove D (2005) The moss Physcomitrella patens. Annu Rev Genet 39: 339-358.
-
(2005)
Annu Rev Genet
, vol.39
, pp. 339-358
-
-
Cove, D.1
-
12
-
-
84870679663
-
Loss of the DNA methyltransferase MET1 Induces H3K9 hypermethylation at PcG target genes and redistribution of H3K27 trimethylation to transposons in Arabidopsis thaliana
-
Deleris A, Stroud H, Bernatavichute Y, Johnson E, Klein G, Schubert D, Jacobsen SE (2012) Loss of the DNA methyltransferase MET1 Induces H3K9 hypermethylation at PcG target genes and redistribution of H3K27 trimethylation to transposons in Arabidopsis thaliana. PLoS Genet 8(11): e1003062.
-
(2012)
PLoS Genet
, vol.8
, Issue.11
-
-
Deleris, A.1
Stroud, H.2
Bernatavichute, Y.3
Johnson, E.4
Klein, G.5
Schubert, D.6
Jacobsen, S.E.7
-
13
-
-
48249102000
-
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
-
Web Server issue
-
Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O (2008) Phylogeny. fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 36(Web Server issue): W465-W469.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Dereeper, A.1
Guignon, V.2
Blanc, G.3
Audic, S.4
Buffet, S.5
Chevenet, F.6
Dufayard, J.F.7
Guindon, S.8
Lefort, V.9
Lescot, M.10
Claverie, J.M.11
Gascuel, O.12
-
14
-
-
33745454548
-
Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
-
Ebbs ML, Bender J (2006) Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. Plant Cell 18(5): 1166-1176.
-
(2006)
Plant Cell
, vol.18
, Issue.5
, pp. 1166-1176
-
-
Ebbs, M.L.1
Bender, J.2
-
15
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32(5): 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
16
-
-
77952734605
-
Conservation and divergence of methylation patterning in plants and animals
-
Feng S, Cokus SJ, Zhang X, Chen PY, Bostick M, Goll MG, Hetzel J, Jain J, Strauss SH, Halpern ME, Ukomadu C, Sadler KC, Pradhan S, Pellegrini M, Jacobsen SE (2010) Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad Sci USA 107(19): 8689-8694.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.19
, pp. 8689-8694
-
-
Feng, S.1
Cokus, S.J.2
Zhang, X.3
Chen, P.Y.4
Bostick, M.5
Goll, M.G.6
Hetzel, J.7
Jain, J.8
Strauss, S.H.9
Halpern, M.E.10
Ukomadu, C.11
Sadler, K.C.12
Pradhan, S.13
Pellegrini, M.14
Jacobsen, S.E.15
-
17
-
-
79955124012
-
Epigenetic modifications in plants: an evolutionary perspective
-
Feng S, Jacobsen SE (2011) Epigenetic modifications in plants: an evolutionary perspective. Curr Opin Plant Biol 14(2): 179-186.
-
(2011)
Curr Opin Plant Biol
, vol.14
, Issue.2
, pp. 179-186
-
-
Feng, S.1
Jacobsen, S.E.2
-
18
-
-
20144383719
-
Molecular tools to study Physcomitrella patens
-
Frank W, Decker EL, Reski R (2005) Molecular tools to study Physcomitrella patens. Plant Biol (Stuttg) 7(3): 220-227.
-
(2005)
Plant Biol (Stuttg)
, vol.7
, Issue.3
, pp. 220-227
-
-
Frank, W.1
Decker, E.L.2
Reski, R.3
-
19
-
-
15744401773
-
Eukaryotic cytosine methyltransferases
-
Goll MG, Bestor TH (2005) Eukaryotic cytosine methyltransferases. Annu Rev Biochem 74: 481-514.
-
(2005)
Annu Rev Biochem
, vol.74
, pp. 481-514
-
-
Goll, M.G.1
Bestor, T.H.2
-
20
-
-
84856585935
-
Phytozome: a comparative platform for green plant genomics
-
Database issue
-
Goodstein DM, Shu S, Howson R, Neupane R, Hayes RD, Fazo J, Mitros T, Dirks W, Hellsten U, Putnam N, Rokhsar DS (2012) Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res 40(Database issue): D1178-D1186.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Goodstein, D.M.1
Shu, S.2
Howson, R.3
Neupane, R.4
Hayes, R.D.5
Fazo, J.6
Mitros, T.7
Dirks, W.8
Hellsten, U.9
Putnam, N.10
Rokhsar, D.S.11
-
21
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52(5): 696-704.
-
(2003)
Syst Biol
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
22
-
-
77449144498
-
Accurate sodium bisulfite sequencing in plants
-
Henderson IR, Chan SR, Cao X, Johnson L, Jacobsen SE (2010a) Accurate sodium bisulfite sequencing in plants. Epigenetics 5(1): 47-49.
-
(2010)
Epigenetics
, vol.5
, Issue.1
, pp. 47-49
-
-
Henderson, I.R.1
Chan, S.R.2
Cao, X.3
Johnson, L.4
Jacobsen, S.E.5
-
23
-
-
78449231939
-
The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana
-
Henderson IR, Deleris A, Wong W, Zhong X, Chin HG, Horwitz GA, Kelly KA, Pradhan S, Jacobsen SE (2010b) The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana. PLoS Genet 6(10): e1001182.
-
(2010)
PLoS Genet
, vol.6
, Issue.10
-
-
Henderson, I.R.1
Deleris, A.2
Wong, W.3
Zhong, X.4
Chin, H.G.5
Horwitz, G.A.6
Kelly, K.A.7
Pradhan, S.8
Jacobsen, S.E.9
-
24
-
-
0031832432
-
A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in Arabidopsis
-
Henikoff S, Comai L (1998) A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in Arabidopsis. Genetics 149(1): 307-318.
-
(1998)
Genetics
, vol.149
, Issue.1
, pp. 307-318
-
-
Henikoff, S.1
Comai, L.2
-
25
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff S, Henikoff JG (1992) Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci USA 89(22): 10915-10919.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, Issue.22
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
26
-
-
84890433614
-
Functional characterization of Nicotiana benthamiana chromomethylase 3 in developmental programs by virus-induced gene silencing
-
Hou PQ, Lee YI, Hsu KT, Lin YT, Wu WZ, Lin JY, Nam TN, Fu SF (2013) Functional characterization of Nicotiana benthamiana chromomethylase 3 in developmental programs by virus-induced gene silencing. Physiol Plant 150(1): 119-132.
-
(2013)
Physiol Plant
, vol.150
, Issue.1
, pp. 119-132
-
-
Hou, P.Q.1
Lee, Y.I.2
Hsu, K.T.3
Lin, Y.T.4
Wu, W.Z.5
Lin, J.Y.6
Nam, T.N.7
Fu, S.F.8
-
27
-
-
80053213807
-
Physcomitrella cyclin-dependent kinase A links cell cycle reactivation to other cellular changes during reprogramming of leaf cells
-
Ishikawa M, Murata T, Sato Y, Nishiyama T, Hiwatashi Y, Imai A, Kimura M, Sugimoto N, Akita A, Oguri Y, Friedman WE, Hasebe M, Kubo M (2011) Physcomitrella cyclin-dependent kinase A links cell cycle reactivation to other cellular changes during reprogramming of leaf cells. Plant Cell 23(8): 2924-2938.
-
(2011)
Plant Cell
, vol.23
, Issue.8
, pp. 2924-2938
-
-
Ishikawa, M.1
Murata, T.2
Sato, Y.3
Nishiyama, T.4
Hiwatashi, Y.5
Imai, A.6
Kimura, M.7
Sugimoto, N.8
Akita, A.9
Oguri, Y.10
Friedman, W.E.11
Hasebe, M.12
Kubo, M.13
-
28
-
-
0342444416
-
GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants
-
Jefferson RA, Kavanagh TA, Bevan MW (1987) GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 6(13): 3901-3907.
-
(1987)
EMBO J
, vol.6
, Issue.13
, pp. 3901-3907
-
-
Jefferson, R.A.1
Kavanagh, T.A.2
Bevan, M.W.3
-
29
-
-
77955844620
-
DNA methylation reprogramming during plant sexual reproduction?
-
Jullien PE, Berger F (2010) DNA methylation reprogramming during plant sexual reproduction? Trends Genet 26(9): 394-399.
-
(2010)
Trends Genet
, vol.26
, Issue.9
, pp. 394-399
-
-
Jullien, P.E.1
Berger, F.2
-
30
-
-
78751470921
-
Structure and function of mammalian DNA methyltransferases
-
Jurkowska RZ, Jurkowski TP, Jeltsch A (2011) Structure and function of mammalian DNA methyltransferases. ChemBioChem 12(2): 206-222.
-
(2011)
ChemBioChem
, vol.12
, Issue.2
, pp. 206-222
-
-
Jurkowska, R.Z.1
Jurkowski, T.P.2
Jeltsch, A.3
-
31
-
-
33845653228
-
The mechanism of gene targeting in Physcomitrella patens: homologous recombination, concatenation and multiple integration
-
Kamisugi Y, Schlink K, Rensing SA, Schween G, von Stackelberg M, Cuming AC, Reski R, Cove DJ (2006) The mechanism of gene targeting in Physcomitrella patens: homologous recombination, concatenation and multiple integration. Nucleic Acids Res 34(21): 6205-6214.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.21
, pp. 6205-6214
-
-
Kamisugi, Y.1
Schlink, K.2
Rensing, S.A.3
Schween, G.4
von Stackelberg, M.5
Cuming, A.C.6
Reski, R.7
Cove, D.J.8
-
32
-
-
68049142320
-
Multiple alignment of DNA sequences with MAFFT
-
Katoh K, Asimenos G, Toh H (2009) Multiple alignment of DNA sequences with MAFFT. Methods Mol Biol 537: 39-64.
-
(2009)
Methods Mol Biol
, vol.537
, pp. 39-64
-
-
Katoh, K.1
Asimenos, G.2
Toh, H.3
-
33
-
-
1542288827
-
FIE and CURLY LEAF polycomb proteins interact in the regulation of homeobox gene expression during sporophyte development
-
Katz A, Oliva M, Mosquna A, Hakim O, Ohad N (2004) FIE and CURLY LEAF polycomb proteins interact in the regulation of homeobox gene expression during sporophyte development. Plant J 37(5): 707-719.
-
(2004)
Plant J
, vol.37
, Issue.5
, pp. 707-719
-
-
Katz, A.1
Oliva, M.2
Mosquna, A.3
Hakim, O.4
Ohad, N.5
-
34
-
-
84879707807
-
The moss Physcomitrella patens reproductive organ development is highly organized, affected by the two SHI/STY genes and by the level of active auxin in the SHI/STY expression domain
-
Landberg K, Pederson ER, Viaene T, Bozorg B, Friml J, Jonsson H, Thelander M, Sundberg E (2013) The moss Physcomitrella patens reproductive organ development is highly organized, affected by the two SHI/STY genes and by the level of active auxin in the SHI/STY expression domain. Plant Physiol 162(3): 1406-1419.
-
(2013)
Plant Physiol
, vol.162
, Issue.3
, pp. 1406-1419
-
-
Landberg, K.1
Pederson, E.R.2
Viaene, T.3
Bozorg, B.4
Friml, J.5
Jonsson, H.6
Thelander, M.7
Sundberg, E.8
-
35
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law JA, Jacobsen SE (2010) Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 11(3): 204-220.
-
(2010)
Nat Rev Genet
, vol.11
, Issue.3
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
36
-
-
3342927934
-
Role of transposable elements in heterochromatin and epigenetic control
-
Lippman Z, Gendrel AV, Black M, Vaughn MW, Dedhia N, McCombie WR, Lavine K, Mittal V, May B, Kasschau KD, Carrington JC, Doerge RW, Colot V, Martienssen R (2004) Role of transposable elements in heterochromatin and epigenetic control. Nature 430(6998): 471-476.
-
(2004)
Nature
, vol.430
, Issue.6998
, pp. 471-476
-
-
Lippman, Z.1
Gendrel, A.V.2
Black, M.3
Vaughn, M.W.4
Dedhia, N.5
McCombie, W.R.6
Lavine, K.7
Mittal, V.8
May, B.9
Kasschau, K.D.10
Carrington, J.C.11
Doerge, R.W.12
Colot, V.13
Martienssen, R.14
-
37
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR (2008) Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 133(3): 523-536.
-
(2008)
Cell
, vol.133
, Issue.3
, pp. 523-536
-
-
Lister, R.1
O'Malley, R.C.2
Tonti-Filippini, J.3
Gregory, B.D.4
Berry, C.C.5
Millar, A.H.6
Ecker, J.R.7
-
38
-
-
78649319201
-
webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser
-
Loytynoja A, Goldman N (2010) webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser. BMC Bioinformatics 11: 579.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 579
-
-
Loytynoja, A.1
Goldman, N.2
-
39
-
-
84867582699
-
Role of DNA methylation in growth and differentiation in Physcomitrella patens and characterization of cytosine DNA methyltransferases
-
Malik G, Dangwal M, Kapoor S, Kapoor M (2012) Role of DNA methylation in growth and differentiation in Physcomitrella patens and characterization of cytosine DNA methyltransferases. FEBS J 279(21): 4081-4094.
-
(2012)
FEBS J
, vol.279
, Issue.21
, pp. 4081-4094
-
-
Malik, G.1
Dangwal, M.2
Kapoor, S.3
Kapoor, M.4
-
40
-
-
78651285748
-
CDD: a Conserved Domain Database for the functional annotation of proteins
-
Database issue
-
Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Lu F, Marchler GH, Mullokandov M, Omelchenko MV, Robertson CL, Song JS, Thanki N, Yamashita RA, Zhang D, Zhang N, Zheng C, Bryant SH (2011) CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res 39(Database issue): D225-D229.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Marchler-Bauer, A.1
Lu, S.2
Anderson, J.B.3
Chitsaz, F.4
Derbyshire, M.K.5
DeWeese-Scott, C.6
Fong, J.H.7
Geer, L.Y.8
Geer, R.C.9
Gonzales, N.R.10
Gwadz, M.11
Hurwitz, D.I.12
Jackson, J.D.13
Ke, Z.14
Lanczycki, C.J.15
Lu, F.16
Marchler, G.H.17
Mullokandov, M.18
Omelchenko, M.V.19
Robertson, C.L.20
Song, J.S.21
Thanki, N.22
Yamashita, R.A.23
Zhang, D.24
Zhang, N.25
Zheng, C.26
Bryant, S.H.27
more..
-
41
-
-
40449123137
-
Cyclical DNA methylation of a transcriptionally active promoter
-
Metivier R, Gallais R, Tiffoche C, Le Peron C, Jurkowska RZ, Carmouche RP, Ibberson D, Barath P, Demay F, Reid G, Benes V, Jeltsch A, Gannon F, Salbert G (2008) Cyclical DNA methylation of a transcriptionally active promoter. Nature 452(7183): 45-50.
-
(2008)
Nature
, vol.452
, Issue.7183
, pp. 45-50
-
-
Metivier, R.1
Gallais, R.2
Tiffoche, C.3
Le Peron, C.4
Jurkowska, R.Z.5
Carmouche, R.P.6
Ibberson, D.7
Barath, P.8
Demay, F.9
Reid, G.10
Benes, V.11
Jeltsch, A.12
Gannon, F.13
Salbert, G.14
-
42
-
-
69449106863
-
Regulation of stem cell maintenance by the Polycomb protein FIE has been conserved during land plant evolution
-
Mosquna A, Katz A, Decker EL, Rensing SA, Reski R, Ohad N (2009) Regulation of stem cell maintenance by the Polycomb protein FIE has been conserved during land plant evolution. Development 136(14): 2433-2444.
-
(2009)
Development
, vol.136
, Issue.14
, pp. 2433-2444
-
-
Mosquna, A.1
Katz, A.2
Decker, E.L.3
Rensing, S.A.4
Reski, R.5
Ohad, N.6
-
43
-
-
0037197978
-
A chloroplast-resident DNA methyltransferase is responsible for hypermethylation of chloroplast genes in Chlamydomonas maternal gametes
-
Nishiyama R, Ito M, Yamaguchi Y, Koizumi N, Sano H (2002) A chloroplast-resident DNA methyltransferase is responsible for hypermethylation of chloroplast genes in Chlamydomonas maternal gametes. Proc Natl Acad Sci USA 99(9): 5925-5930.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.9
, pp. 5925-5930
-
-
Nishiyama, R.1
Ito, M.2
Yamaguchi, Y.3
Koizumi, N.4
Sano, H.5
-
44
-
-
0034723470
-
Tagged mutagenesis and gene-trap in the moss, Physcomitrella patens by shuttle mutagenesis
-
Nishiyama T, Hiwatashi Y, Sakakibara I, Kato M, Hasebe M (2000) Tagged mutagenesis and gene-trap in the moss, Physcomitrella patens by shuttle mutagenesis. DNA Res 7(1): 9-17.
-
(2000)
DNA Res
, vol.7
, Issue.1
, pp. 9-17
-
-
Nishiyama, T.1
Hiwatashi, Y.2
Sakakibara, I.3
Kato, M.4
Hasebe, M.5
-
45
-
-
70349507539
-
A polycomb repressive complex 2 gene regulates apogamy and gives evolutionary insights into early land plant evolution
-
Okano Y, Aono N, Hiwatashi Y, Murata T, Nishiyama T, Ishikawa T, Kubo M, Hasebe M (2009) A polycomb repressive complex 2 gene regulates apogamy and gives evolutionary insights into early land plant evolution. Proc Natl Acad Sci USA 106(38): 16321-16326.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.38
, pp. 16321-16326
-
-
Okano, Y.1
Aono, N.2
Hiwatashi, Y.3
Murata, T.4
Nishiyama, T.5
Ishikawa, T.6
Kubo, M.7
Hasebe, M.8
-
46
-
-
0034872980
-
Maize chromomethylase Zea methyltransferase2 is required for CpNpG methylation
-
Papa CM, Springer NM, Muszynski MG, Meeley R, Kaeppler SM (2001) Maize chromomethylase Zea methyltransferase2 is required for CpNpG methylation. Plant Cell 13(8): 1919-1928.
-
(2001)
Plant Cell
, vol.13
, Issue.8
, pp. 1919-1928
-
-
Papa, C.M.1
Springer, N.M.2
Muszynski, M.G.3
Meeley, R.4
Kaeppler, S.M.5
-
47
-
-
34548629973
-
Plant cytosine-5 DNA methyltransferases: structure, function, and molecular evolution
-
Pavlopoulou A, Kossida S (2007) Plant cytosine-5 DNA methyltransferases: structure, function, and molecular evolution. Genomics 90(4): 530-541.
-
(2007)
Genomics
, vol.90
, Issue.4
, pp. 530-541
-
-
Pavlopoulou, A.1
Kossida, S.2
-
48
-
-
37849032457
-
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants
-
Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, Tanahashi T, Sakakibara K, Fujita T, Oishi K, Shin IT, Kuroki Y, Toyoda A, Suzuki Y, Hashimoto S, Yamaguchi K, Sugano S, Kohara Y, Fujiyama A, Anterola A, Aoki S, Ashton N, Barbazuk WB, Barker E, Bennetzen JL, Blankenship R, Cho SH, Dutcher SK, Estelle M, Fawcett JA, Gundlach H, Hanada K, Heyl A, Hicks KA, Hughes J, Lohr M, Mayer K, Melkozernov A, Murata T, Nelson DR, Pils B, Prigge M, Reiss B, Renner T, Rombauts S, Rushton PJ, Sanderfoot A, Schween G, Shiu SH, Stueber K, Theodoulou FL, Tu H, van de Peer Y, Verrier PJ, Waters E, Wood A, Yang L, Cove D, Cuming AC, Hasebe M, Lucas S, Mishler BD, Reski R, Grigoriev IV, Quatrano RS, Boore JL (2008) The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 319(5859): 64-69.
-
(2008)
Science
, vol.319
, Issue.5859
, pp. 64-69
-
-
Rensing, S.A.1
Lang, D.2
Zimmer, A.D.3
Terry, A.4
Salamov, A.5
Shapiro, H.6
Nishiyama, T.7
Perroud, P.F.8
Lindquist, E.A.9
Kamisugi, Y.10
Tanahashi, T.11
Sakakibara, K.12
Fujita, T.13
Oishi, K.14
Shin, I.T.15
Kuroki, Y.16
Toyoda, A.17
Suzuki, Y.18
Hashimoto, S.19
Yamaguchi, K.20
Sugano, S.21
Kohara, Y.22
Fujiyama, A.23
Anterola, A.24
Aoki, S.25
Ashton, N.26
Barbazuk, W.B.27
Barker, E.28
Bennetzen, J.L.29
Blankenship, R.30
Cho, S.H.31
Dutcher, S.K.32
Estelle, M.33
Fawcett, J.A.34
Gundlach, H.35
Hanada, K.36
Heyl, A.37
Hicks, K.A.38
Hughes, J.39
Lohr, M.40
Mayer, K.41
Melkozernov, A.42
Murata, T.43
Nelson, D.R.44
Pils, B.45
Prigge, M.46
Reiss, B.47
Renner, T.48
Rombauts, S.49
Rushton, P.J.50
Sanderfoot, A.51
Schween, G.52
Shiu, S.H.53
Stueber, K.54
Theodoulou, F.L.55
Tu, H.56
van de Peer, Y.57
Verrier, P.J.58
Waters, E.59
Wood, A.60
Yang, L.61
Cove, D.62
Cuming, A.C.63
Hasebe, M.64
Lucas, S.65
Mishler, B.D.66
Reski, R.67
Grigoriev, I.V.68
Quatrano, R.S.69
Boore, J.L.70
more..
-
49
-
-
43949140009
-
Class 1 KNOX genes are not involved in shoot development in the moss Physcomitrella patens but do function in sporophyte development
-
Sakakibara K, Nishiyama T, Deguchi H, Hasebe M (2008) Class 1 KNOX genes are not involved in shoot development in the moss Physcomitrella patens but do function in sporophyte development. Evol Dev 10(5): 555-566.
-
(2008)
Evol Dev
, vol.10
, Issue.5
, pp. 555-566
-
-
Sakakibara, K.1
Nishiyama, T.2
Deguchi, H.3
Hasebe, M.4
-
50
-
-
0035057514
-
Isolation of homeodomain-leucine zipper genes from the moss Physcomitrella patens and the evolution of homeodomain-leucine zipper genes in land plants
-
Sakakibara K, Nishiyama T, Kato M, Hasebe M (2001) Isolation of homeodomain-leucine zipper genes from the moss Physcomitrella patens and the evolution of homeodomain-leucine zipper genes in land plants. Mol Biol Evol 18(4): 491-502.
-
(2001)
Mol Biol Evol
, vol.18
, Issue.4
, pp. 491-502
-
-
Sakakibara, K.1
Nishiyama, T.2
Kato, M.3
Hasebe, M.4
-
51
-
-
78751580443
-
Differentiation of epigenetic modifications between transposons and genes
-
Saze H, Kakutani T (2011) Differentiation of epigenetic modifications between transposons and genes. Curr Opin Plant Biol 14(1): 81-87.
-
(2011)
Curr Opin Plant Biol
, vol.14
, Issue.1
, pp. 81-87
-
-
Saze, H.1
Kakutani, T.2
-
52
-
-
74049130225
-
Solving the Dnmt2 enigma
-
Schaefer M, Lyko F (2010) Solving the Dnmt2 enigma. Chromosoma 119(1): 35-40.
-
(2010)
Chromosoma
, vol.119
, Issue.1
, pp. 35-40
-
-
Schaefer, M.1
Lyko, F.2
-
53
-
-
84872614860
-
Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome
-
Stroud H, Greenberg MV, Feng S, Bernatavichute YV, Jacobsen SE (2013) Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. Cell 152(1-2): 352-364.
-
(2013)
Cell
, vol.152
, Issue.1-2
, pp. 352-364
-
-
Stroud, H.1
Greenberg, M.V.2
Feng, S.3
Bernatavichute, Y.V.4
Jacobsen, S.E.5
-
54
-
-
84875741680
-
The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
-
Zemach A, Kim MY, Hsieh PH, Coleman-Derr D, Eshed-Williams L, Thao K, Harmer SL, Zilberman D (2013) The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin. Cell 153(1): 193-205.
-
(2013)
Cell
, vol.153
, Issue.1
, pp. 193-205
-
-
Zemach, A.1
Kim, M.Y.2
Hsieh, P.H.3
Coleman-Derr, D.4
Eshed-Williams, L.5
Thao, K.6
Harmer, S.L.7
Zilberman, D.8
-
55
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation
-
Zemach A, McDaniel IE, Silva P, Zilberman D (2010) Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 328(5980): 916-919.
-
(2010)
Science
, vol.328
, Issue.5980
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
Zilberman, D.4
-
56
-
-
77956504685
-
Evolution of eukaryotic DNA methylation and the pursuit of safer sex
-
Zemach A, Zilberman D (2010) Evolution of eukaryotic DNA methylation and the pursuit of safer sex. Curr Biol 20(17): R780-R785.
-
(2010)
Curr Biol
, vol.20
, Issue.17
-
-
Zemach, A.1
Zilberman, D.2
-
57
-
-
33748629119
-
Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis
-
Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR (2006) Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell 126(6): 1189-1201.
-
(2006)
Cell
, vol.126
, Issue.6
, pp. 1189-1201
-
-
Zhang, X.1
Yazaki, J.2
Sundaresan, A.3
Cokus, S.4
Chan, S.W.5
Chen, H.6
Henderson, I.R.7
Shinn, P.8
Pellegrini, M.9
Jacobsen, S.E.10
Ecker, J.R.11
-
58
-
-
84880334849
-
Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions
-
Zimmer AD, Lang D, Buchta K, Rombauts S, Nishiyama T, Hasebe M, van de Peer Y, Rensing SA, Reski R (2013) Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions. BMC Genom 14: 498.
-
(2013)
BMC Genom
, vol.14
, pp. 498
-
-
Zimmer, A.D.1
Lang, D.2
Buchta, K.3
Rombauts, S.4
Nishiyama, T.5
Hasebe, M.6
van de Peer, Y.7
Rensing, S.A.8
Reski, R.9
|