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Lenards, A.10
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Lowry, S.13
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Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes
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3504007, 23185583
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Johnson MT, Carpenter EJ, Tian Z, Bruskiewich R, Burris JN, Carrigan CT, Chase MW, Clarke ND, Covshoff S, dePamphilis CW, Edger PP, Goh F, Graham S, Greiner S, Hibberd JM, Jordon-Thaden I, Kutchan TM, Leebens-Mack J, Melkonian M, Miles N, Myburg H, Patterson J, Pires JC, Ralph P, Rolf M, Sage RF, Soltis D, Soltis P, Stevenson D, Stewart CN, et al. Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. PLoS One 2012, 7:e50226. 10.1371/journal.pone.0050226, 3504007, 23185583.
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dePamphilis, C.W.10
Edger, P.P.11
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Jordon-Thaden, I.16
Kutchan, T.M.17
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Patterson, J.22
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Rolf, M.25
Sage, R.F.26
Soltis, D.27
Soltis, P.28
Stevenson, D.29
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4
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84902474663
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SOAPdenovo-Trans: De novo transcriptome assembly with short RNA-Seq reads
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Xie Y, Wu G, Tang J, Luo R, Patterson J, Liu S, Huang W, He G, Gu S, Li S, Zhou X, Lam TW, Li Y, Xu X, Wong GK, Wang J. SOAPdenovo-Trans: De novo transcriptome assembly with short RNA-Seq reads. Bioinformatics 2014, 30:1660-1666. 10.1093/bioinformatics/btu077, 24532719.
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Bioinformatics
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Patterson, J.5
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Huang, W.7
He, G.8
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Li, S.10
Zhou, X.11
Lam, T.W.12
Li, Y.13
Xu, X.14
Wong, G.K.15
Wang, J.16
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5
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84945498126
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A phylotranscriptomics analysis of the origin and early diversification of land plants
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IN PRESS
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Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker M, Burleigh JG, Gitzendanner MA, Ruhfel B, Wafula E, Der JP, Graham SW, Mathews S, Melkonian M, Soltis DE, Soltis PS, Miles NW, Rothfels C, Pokorny L, Shaw AJ, deGironimo L, Stevenson DW, Surek B, Villarreal JC, Roure B, Philippe H, dePamphilis CW, Chen T, et al. A phylotranscriptomics analysis of the origin and early diversification of land plants. Proc Natl Acad Sci U S A IN PRESS.
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Proc Natl Acad Sci U S A
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Carpenter, E.5
Matasci, N.6
Ayyampalayam, S.7
Barker, M.8
Burleigh, J.G.9
Gitzendanner, M.A.10
Ruhfel, B.11
Wafula, E.12
Der, J.P.13
Graham, S.W.14
Mathews, S.15
Melkonian, M.16
Soltis, D.E.17
Soltis, P.S.18
Miles, N.W.19
Rothfels, C.20
Pokorny, L.21
Shaw, A.J.22
deGironimo, L.23
Stevenson, D.W.24
Surek, B.25
Villarreal, J.C.26
Roure, B.27
Philippe, H.28
dePamphilis, C.W.29
Chen, T.30
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6
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85029728437
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iPlant Data Store for 1KP Pilot [http://mirrors.iplantcollaborative.org/browse/iplant/home/shared/onekp_pilot].
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iPlant Data Store for 1KP Pilot
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8
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85029735028
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iPlant Learning Center [http://www.iplantcollaborative.org/learning-center/all-tutorials].
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iPlant Learning Center
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10
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85029736060
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Using the iDrop Desktop [https://pods.iplantcollaborative.org/wiki/display/DS/Using+iDrop+Desktop].
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Using the iDrop Desktop
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11
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Phylogenetic analysis with the iPlant discovery environment
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Unit 6.13
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Matasci N, McKay SJ. Phylogenetic analysis with the iPlant discovery environment. Curr Protoc Bioinformatics 2013, 6:Unit 6.13.
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Curr Protoc Bioinformatics
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Matasci, N.1
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Newick Trees Format [http://evolution.genetics.washington.edu/phylip/newicktree.html].
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Newick Trees Format
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14
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85029734107
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Using iCommands (Unix) [https://pods.iplantcollaborative.org/wiki/display/DS/Using+iCommands].
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Using iCommands (Unix)
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15
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84907851887
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CANDO and the infinite drug discovery frontier
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24980786
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Minie M, Chopra G, Sethi G, Horst J, White G, Roy A, Hatti K, Samudrala R. CANDO and the infinite drug discovery frontier. Drug Discov Today 2014, 19:1353-1363. 10.1016/j.drudis.2014.06.018, 24980786.
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Drug Discov Today
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White, G.5
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Hatti, K.7
Samudrala, R.8
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19
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85029736617
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1KP Capstone Objective [https://pods.iplantcollaborative.org/wiki/display/iptol/OneKP+Capstone+Wiki].
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1KP Capstone Objective
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85029729728
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1KP Papers in Progress [https://pods.iplantcollaborative.org/wiki/display/iptol/OneKP+companion+papers].
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1KP Papers in Progress
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21
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84893809985
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A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity
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24436181
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Sayou C, Monniaux M, Nanao MH, Moyroud E, Brockington SF, Thévenon E, Chahtane H, Warthmann N, Melkonian M, Zhang Y, Wong GK, Weigel D, Parcy F, Dumas R. A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity. Science 2014, 343:645-648. 10.1126/science.1248229, 24436181.
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Science
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Sayou, C.1
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Thévenon, E.6
Chahtane, H.7
Warthmann, N.8
Melkonian, M.9
Zhang, Y.10
Wong, G.K.11
Weigel, D.12
Parcy, F.13
Dumas, R.14
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22
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84895524488
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Independent optical excitation of distinct neural populations
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3943671, 24509633
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Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, Morimoto TK, Chuong AS, Carpenter EJ, Tian Z, Wang J, Xie Y, Yan Z, Zhang Y, Chow BY, Surek B, Melkonian M, Jayaraman V, Constantine-Paton M, Wong GK, Boyden ES. Independent optical excitation of distinct neural populations. Nat Methods 2014, 11:338-346. 10.1038/nmeth.2836, 3943671, 24509633.
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Klapoetke, N.C.1
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Birdsey-Benson, A.5
Cho, Y.K.6
Morimoto, T.K.7
Chuong, A.S.8
Carpenter, E.J.9
Tian, Z.10
Wang, J.11
Xie, Y.12
Yan, Z.13
Zhang, Y.14
Chow, B.Y.15
Surek, B.16
Melkonian, M.17
Jayaraman, V.18
Constantine-Paton, M.19
Wong, G.K.20
Boyden, E.S.21
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