Neisseria zalophi sp. nov., isolated from oral cavity of California sea lions (Zalophus californianus)

Archives of Microbiology

Volumn 200, Issue 5, 2018, Pages 819-828

  Volokhov, Dmitriy V ^a   Amselle, Megan ^b   Bodeis Jones, Sonya ^a   Delmonte, Pierluigi ^a   Zhang, Shuping ^c   Davidson, Maureen K ^a   Gulland, Frances M ^d   Chizhikov, Vladimir E ^a  

^a CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

^b AMERICAN TYPE CULTURE COLLECTION   (United States)

^c UNIVERSITY OF MISSOURI   (United States)

^d THE MARINE MAMMAL CENTER   (United States)

Author keywords

California sea lions; Neisseria; Neisseria zalophi sp. nov; Phylogeny

Indexed keywords

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; CONTROLLED STUDY; DNA BASE COMPOSITION; GAS CHROMATOGRAPHY; GENE LOCUS; GENE SEQUENCE; GENETIC ANALYSIS; HOUSEKEEPING GENE; LIPID COMPOSITION; MOUTH CAVITY; NEISSERIA; NEISSERIA ANIMALORIS; NEISSERIA CANIS; NEISSERIA DUMASIANA; NEISSERIA ZALOPHI; NEISSERIA ZOODEGMATIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; ZALOPHUS CALIFORNIANUS; ANIMAL; DNA SEQUENCE; GENETICS; GENOTYPE; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR TYPING; MOUTH; OTARIIDAE; PHENOTYPE;

BACTERIAL DNA; FATTY ACID; RNA 16S;

ANIMALS; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; GENOTYPE; MOLECULAR TYPING; MOUTH; NEISSERIA; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEA LIONS; SEQUENCE ANALYSIS, DNA;

EID: 85044954766     PISSN: 03028933     EISSN: 1432072X     Source Type: Journal    
DOI: 10.1007/s00203-018-1499-x     Document Type: Article

References (41)

1. Adekambi T, Drancourt M, Raoult D (2009) The rpoB gene as a tool for clinical microbiologists. Trends Microbiol 17:37–45
2. Barbe G, Babolat M, Boeufgras JM, Monget D, Freney J (1994) Evaluation of API NH, a new 2-hour system for identification of Neisseria and Haemophilus species and Moraxella catarrhalis in a routine clinical laboratory. J Clin Microbiol 32:187–189
3. Bennett JS, Watkins ER, Jolley KA, Harrison OB, Maiden MC (2014) Identifying Neisseria species by use of the 50S ribosomal protein L6 (rplF) gene. J Clin Microbiol 52:1375–1381
4. Berger U (1962) Uber das Vorkommen von Neisserien bei einigen Tieren. Z Hyg Infektionskr 148:445–457
5. Bezbaruah RL, Pillai KR, Gogoi BK, Baruah JN (1988) Effect of growth temperature and media composition on the fatty acid composition of Bacillus stearothermophilus AN 002. Antonie Van Leeuwenhoek 54:37–45
6. Bik EM, Costello EK, Switzer AD, Callahan BJ, Holmes SP, Wells RS, Carlin KP, Jensen ED, Venn-Watson S, Relman DA (2016) Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea. Nat Commun 7:10516
7. Biolog-Inc 2013. GEN III MicroPlateTM. http://www.biolog.com/pdf/milit/00P%20185rA%20GEN%20III%20MicroPlate%20IFU%20Mar2008.pdf
8. Cantas H, Pekarkova M, Kippenes HS, Brudal E, Sorum H (2011) First reported isolation of Neisseria canis from a deep facial wound infection in a dog. J Clin Microbiol 49:2043–2046
9. Christen R (2008) Identifications of pathogens—a bioinformatic point of view. Curr Opin Biotechnol 19:266–273
10. D’Amato RF, Eriquez LA, Tomfohrde KM, Singerman E (1978) Rapid identification of Neisseria gonorrhoeae and Neisseria meningitidis by using enzymatic profiles. J Clin Microbiol 7:77–81
11. Delmonte P, Kia AR, Hu Q, Rader JI (2009) Review of methods for preparation and gas chromatographic separation of trans and cis reference fatty acids. J AOAC Int 92:1310–1326
12. Delmonte P, Fardin-Kia AR, Rader JI (2013) Separation of fatty acid methyl esters by GC-online hydrogenation × GC. Anal Chem 85:1517–1524
13. Dewhirst FE, Klein EA, Thompson EC, Blanton JM, Chen T, Milella L, Buckley CM, Davis IJ, Bennett ML, Marshall-Jones ZV (2012) The canine oral microbiome. PLoS One 7:e36067
14. Fournier PE, Suhre K, Fournous G, Raoult D (2006) Estimation of prokaryote genomic DNA G + C content by sequencing universally conserved genes. Int J Syst Evol Microbiol 56:1025–1029
15. Frye SA, Nilsen M, Tonjum T, Ambur OH, 2013. Dialects of the DNA uptake sequence in Neisseriaceae. PLoS Genet 9, e1003458
16. Hansen CM, Meixell BW, Van Hemert C, Hare RF, Hueffer K (2015) Microbial infections are associated with embryo mortality in arctic-nesting geese. Appl Environ Microbiol 81:5583–5592
17. Harmsen D, Singer C, Rothganger J, Tonjum T, de Hoog GS, Shah H, Albert J, Frosch M (2001) Diagnostics of Neisseriaceae and Moraxellaceae by ribosomal DNA sequencing: ribosomal differentiation of medical microorganisms. J Clin Microbiol 39:936–942
18. Hernandez-Castro R, Martinez-Chavarria L, Diaz-Avelar A, Romero-Osorio A, Godinez-Reyes C, Zavala-Gonzalez A, Verdugo-Rodriguez A (2005) Aerobic bacterial flora of the nasal cavity in Gulf of California sea lion (Zalophus californianus) pups. Vet J 170:359–363
19. Kim M, Park SC, Baek I, Chun J (2015) Large-scale evaluation of experimentally determined DNA G + C contents with whole genome sequences of prokaryotes. Syst Appl Microbiol 38:79–83
20. Knapp JS (1988) Historical perspectives and identification of Neisseria and related species. Clin Microbiol Rev 1:415–431
21. Kuhnert P, Korczak BM (2006) Prediction of whole-genome DNA-DNA similarity, determination of G + C content and phylogenetic analysis within the family Pasteurellaceae by multilocus sequence analysis (MLSA). Microbiology 152:2537–2548
22. Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for Bigger Datasets. Mol Biol Evol 33:1870–1874
23. Liu G, Tang CM, Exley RM (2015) Non-pathogenic Neisseria: members of an abundant, multi-habitat, diverse genus. Microbiology 161:1297–1312
24. Mechergui A, Achour W, Ben Hassen A (2014a) Comparison of 16S rRNA sequencing with biochemical testing for species-level identification of clinical isolates of Neisseria spp. World J Microbiol Biotechnol 30:2181–2188
25. Mechergui A, Achour W, Hassen AB, 2014b. Intraspecific 16S rRNA gene diversity among clinical isolates of Neisseria species. APMIS 122:437–442
26. Moss CW, Lewis VJ (1967) Characterization of clostridia by gas chromatography. I. Differentiation of species by cellular fatty acids. Appl Microbiol 15:390–397
27. NOAA (2015) California Sea Lion (Zalophus californianus): U.S. Stock. http://www.nmfs.noaa.gov/pr/sars/pdf/stocks/pacific/2014/po2014_ca_sea_lion-us.pdf
28. Oren A (2008) Microbial life at high salt concentrations: phylogenetic and metabolic diversity. Saline Syst 4:2
29. Smith AW, Vedros NA, Akers TG, Gilmartin WG (1978) Hazards of disease transfer from marine mammals to land mammals: review and recent findings. J Am Vet Med Assoc 173:1131–1133
30. Smith NH, Holmes EC, Donovan GM, Carpenter GA, Spratt BG (1999) Networks and groups within the genus Neisseria: analysis of argF, recA, rho, and 16S rRNA sequences from human Neisseria species. Mol Biol Evol 16:773–783
31. Vandamme P, Holmes B, Bercovier H, Coenye T (2006) Classification of Centers for Disease Control Group Eugonic Fermenter (EF)-4a and EF-4b as Neisseria animaloris sp. nov. and Neisseria zoodegmatis sp. nov., respectively. Int J Syst Evol Microbiol 56:1801–1805
32. Virji M (2009) Pathogenic Neisseriae: surface modulation, pathogenesis and infection control. Nat Rev Microbiol 7:274–286
33. Volokhov DV, Norris T, Rios C, Davidson MK, Messick JB, Gulland FM, Chizhikov VE (2011) Novel hemotrophic mycoplasma identified in naturally infected California sea lions (Zalophus californianus). Vet Microbiol 149:262–268
34. Volokhov DV, Amselle M, Beck BJ, Popham DL, Whittaker P, Wang H, Kerrigan E, Chizhikov VE (2012a) Lactobacillus brantae sp. nov., isolated from faeces of Canada geese (Branta canadensis). Int J Syst Evol Microbiol 62:2068–2076
35. Volokhov DV, Simonyan V, Davidson MK, Chizhikov VE (2012b) RNA polymerase beta subunit (rpoB) gene and the 16S-23S rRNA intergenic transcribed spacer region (ITS) as complementary molecular markers in addition to the 16S rRNA gene for phylogenetic analysis and identification of the species of the family Mycoplasmataceae. Mol Phylogenet Evol 62:515–528
36. Wang C, Luo J, Wang H, Amer S, Ding H, Dong Y, He H (2016) Isolation and characterization of a Neisseria sp. from the captive wild goose (Anser anser). Integr Zool 11:128–133
37. Weyand NJ, Ma M, Phifer-Rixey M, Taku NA, Rendon MA, Hockenberry AM, Kim WJ, Agellon AB, Biais N, Suzuki TA, Goodyer-Sait L, Harrison OB, Bratcher HB, Nachman MW, Maiden MC, So M (2016) Isolation and characterization of Neisseria musculi sp. nov., from the wild house mouse. Int J Syst Evol Microbiol 66:3585–3593
38. Whittaker P, Keys CE, Brown EW, Fry FS (2007) Differentiation of Enterobacter sakazakii from closely related Enterobacter and Citrobacter species using fatty acid profiles. J Agric Food Chem 55:4617–4623
39. Wroblewski D, Cole J, McGinnis J, Perez M, Wilson H, Mingle LA, Musser KA, Wolfgang WJ (2017) Neisseria dumasiana sp. nov. from human sputum and a dog’s mouth. Int J Syst Evol Microbiol 67:4304–4310
40. Zavala A, Naya H, Romero H, Sabbia V, Piovani R, Musto H (2005) Genomic GC content prediction in prokaryotes from a sample of genes. Gene 357:137–143
41. Zhou J, Spratt BG (1992) Sequence diversity within the argF, fbp and recA genes of natural isolates of Neisseria meningitidis: interspecies recombination within the argF gene. Mol Microbiol 6:2135–2146