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Volumn 7, Issue , 2016, Pages

Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RNA 16S; SEA WATER;

EID: 84957544321     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms10516     Document Type: Article
Times cited : (178)

References (70)
  • 1
    • 79960548631 scopus 로고    scopus 로고
    • Trophic downgrading of planet earth
    • Estes, J. A. et al. Trophic downgrading of planet Earth. Science 333, 301-306 (2011).
    • (2011) Science , vol.333 , pp. 301-306
    • Estes, J.A.1
  • 3
    • 24644497482 scopus 로고    scopus 로고
    • Bottlenose dolphins as marine ecosystem sentinels: Developing a health monitoring system
    • Wells, R. S. et al. Bottlenose dolphins as marine ecosystem sentinels: developing a health monitoring system. Ecohealth 1, 246-254 (2004).
    • (2004) Ecohealth , vol.1 , pp. 246-254
    • Wells, R.S.1
  • 5
    • 46249085739 scopus 로고    scopus 로고
    • Evolution of mammals and their gut microbes
    • Ley, R. E. et al. Evolution of mammals and their gut microbes. Science 320, 1647-1651 (2008).
    • (2008) Science , vol.320 , pp. 1647-1651
    • Ley, R.E.1
  • 6
    • 79956301905 scopus 로고    scopus 로고
    • Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
    • Muegge, B. D. et al. Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science 332, 970-974 (2011).
    • (2011) Science , vol.332 , pp. 970-974
    • Muegge, B.D.1
  • 7
    • 84924078627 scopus 로고    scopus 로고
    • Convergent evolution of the genomes of marine mammals
    • Foote, A. D. et al. Convergent evolution of the genomes of marine mammals. Nat. Genet. 47, 272-275 (2015).
    • (2015) Nat. Genet. , vol.47 , pp. 272-275
    • Foote, A.D.1
  • 8
    • 80055070300 scopus 로고    scopus 로고
    • Impacts of the cretaceous terrestrial revolution and KPg extinction on mammal diversification
    • Meredith, R. W. et al. Impacts of the Cretaceous terrestrial revolution and KPg extinction on mammal diversification. Science 334, 521-524 (2011).
    • (2011) Science , vol.334 , pp. 521-524
    • Meredith, R.W.1
  • 9
    • 62649100158 scopus 로고    scopus 로고
    • Hippopotamus and whale phylogeny
    • Geisler, J. H. & Theodor, J. M. Hippopotamus and whale phylogeny. Nature 458, E1-E4 (2009).
    • (2009) Nature , vol.458 , pp. E1-E4
    • Geisler, J.H.1    Theodor, J.M.2
  • 10
    • 34250613164 scopus 로고    scopus 로고
    • Evolution of marine mammals: Back to the sea after 300 million years
    • Uhen, M. D. Evolution of marine mammals: back to the sea after 300 million years. Anat. Rec. (Hoboken) 290, 514-522 (2007).
    • (2007) Anat. Rec. (Hoboken) , vol.290 , pp. 514-522
    • Uhen, M.D.1
  • 11
    • 70349622813 scopus 로고    scopus 로고
    • Relationships of cetacea (Artiodactyla) among mammals: Increased taxon sampling alters interpretations of key fossils and character evolution
    • Spaulding, M., O'Leary, M. A. & Gatesy, J. Relationships of Cetacea (Artiodactyla) among mammals: increased taxon sampling alters interpretations of key fossils and character evolution. PLoS ONE 4, e7062 (2009).
    • (2009) PLoS ONE , vol.4 , pp. e7062
    • Spaulding, M.1    O'Leary, M.A.2    Gatesy, J.3
  • 12
    • 19044400807 scopus 로고    scopus 로고
    • Molecular phylogeny of the carnivora (mammalia): Assessing the impact of increased sampling on resolving enigmatic relationships
    • Flynn, J. J., Finarelli, J. A., Zehr, S., Hsu, J. & Nedbal, M. A. Molecular phylogeny of the carnivora (mammalia): assessing the impact of increased sampling on resolving enigmatic relationships. Syst. Biol. 54, 317-337 (2005).
    • (2005) Syst. Biol. , vol.54 , pp. 317-337
    • Flynn, J.J.1    Finarelli, J.A.2    Zehr, S.3    Hsu, J.4    Nedbal, M.A.5
  • 13
    • 42449129746 scopus 로고    scopus 로고
    • Primary bacterial pathogens in bottlenose dolphins tursiops truncatus: Needles in haystacks of commensal and environmental microbes
    • Venn-Watson, S., Smith, C. R. & Jensen, E. D. Primary bacterial pathogens in bottlenose dolphins Tursiops truncatus: needles in haystacks of commensal and environmental microbes. Dis. Aquat. Organ. 79, 87-93 (2008).
    • (2008) Dis. Aquat. Organ. , vol.79 , pp. 87-93
    • Venn-Watson, S.1    Smith, C.R.2    Jensen, E.D.3
  • 14
    • 84944547310 scopus 로고    scopus 로고
    • The marine mammal microbiome: Current knowledge and future directions
    • Nelson, T. M., Apprill, A., Mann, J., Rogers, T. L. & Brown, M. V. The marine mammal microbiome: current knowledge and future directions. Microbiol. Aust. 36, 8-13 (2015).
    • (2015) Microbiol. Aust. , vol.36 , pp. 8-13
    • Nelson, T.M.1    Apprill, A.2    Mann, J.3    Rogers, T.L.4    Brown, M.V.5
  • 15
    • 78649726417 scopus 로고    scopus 로고
    • Novel diversity of bacterial communities associated with bottlenose dolphin upper respiratory tracts
    • Johnson, W. R. et al. Novel diversity of bacterial communities associated with bottlenose dolphin upper respiratory tracts. Environ. Microbiol. Rep. 1, 555-562 (2009).
    • (2009) Environ. Microbiol. Rep. , vol.1 , pp. 555-562
    • Johnson, W.R.1
  • 16
    • 77956871887 scopus 로고    scopus 로고
    • Ecological characterisation of the colonic microbiota in arctic and sub-arctic seals
    • Glad, T. et al. Ecological characterisation of the colonic microbiota in arctic and sub-arctic seals. Microb. Ecol. 60, 320-330 (2010).
    • (2010) Microb. Ecol. , vol.60 , pp. 320-330
    • Glad, T.1
  • 17
    • 33845348607 scopus 로고    scopus 로고
    • Aerobic microorganisms associated with free-ranging bottlenose dolphins in coastal gulf of Mexico and Atlantic ocean waters
    • Buck, J. D., Wells, R. S., Rhinehart, H. L. & Hansen, L. J. Aerobic microorganisms associated with free-ranging bottlenose dolphins in coastal gulf of Mexico and Atlantic ocean waters. J. Wildlife Dis. 42, 536-544 (2006).
    • (2006) J. Wildlife Dis. , vol.42 , pp. 536-544
    • Buck, J.D.1    Wells, R.S.2    Rhinehart, H.L.3    Hansen, L.J.4
  • 18
    • 70350152761 scopus 로고    scopus 로고
    • Antibiotic-resistant organisms cultured from Atlantic bottlenose dolphins (tursiops truncatus) inhabiting estuarine waters of charleston, SC and Indian River Lagoon, FL
    • Schaefer, A. M., Goldstein, J. D., Reif, J. S., Fair, P. A. & Bossart, G. D. Antibiotic-resistant organisms cultured from atlantic bottlenose dolphins (tursiops truncatus) inhabiting estuarine waters of charleston, SC and Indian River lagoon, FL. Ecohealth 6, 33-41 (2009).
    • (2009) Ecohealth , vol.6 , pp. 33-41
    • Schaefer, A.M.1    Goldstein, J.D.2    Reif, J.S.3    Fair, P.A.4    Bossart, G.D.5
  • 19
    • 79951580915 scopus 로고    scopus 로고
    • Isolation of culturable microorganisms from free-ranging bottlenose dolphins (Tursiops truncatus) from the Southeastern United States
    • Morris, P. J. et al. Isolation of culturable microorganisms from free-ranging bottlenose dolphins (Tursiops truncatus) from the southeastern United States. Vet. Microbiol. 148, 440-447 (2011).
    • (2011) Vet. Microbiol. , vol.148 , pp. 440-447
    • Morris, P.J.1
  • 20
    • 84863416260 scopus 로고    scopus 로고
    • Temporal stability and species specificity in bacteria associated with the bottlenose dolphins respiratory system
    • Lima, N., Rogers, T., Acevedo-Whitehouse, K. & Brown, M. V. Temporal stability and species specificity in bacteria associated with the bottlenose dolphins respiratory system. Environ. Microbiol. Rep. 4, 89-96 (2012).
    • (2012) Environ. Microbiol. Rep. , vol.4 , pp. 89-96
    • Lima, N.1    Rogers, T.2    Acevedo-Whitehouse, K.3    Brown, M.V.4
  • 21
    • 84899981109 scopus 로고    scopus 로고
    • Humpback whale populations share a core skin bacterial community: Towards a health index for marine mammals?
    • Apprill, A. et al. Humpback whale populations share a core skin bacterial community: towards a health index for marine mammals? PLoS One 9, e90785 (2014).
    • (2014) PLoS One , vol.9 , pp. e90785
    • Apprill, A.1
  • 22
    • 84885952123 scopus 로고    scopus 로고
    • Age-related differences revealed in australian fur seal arctocephalus pusillus doriferus gut microbiota
    • Smith, S. C., Chalker, A., Dewar, M. L. & Arnould, J. P. Y. Age-related differences revealed in Australian fur seal Arctocephalus pusillus doriferus gut microbiota. FEMS. Microbiol. Ecol. 86, 246-255 (2013).
    • (2013) FEMS. Microbiol. Ecol. , vol.86 , pp. 246-255
    • Smith, S.C.1    Chalker, A.2    Dewar, M.L.3    Arnould, J.P.Y.4
  • 23
    • 84893624554 scopus 로고    scopus 로고
    • The gut bacterial community of mammals from marine and terrestrial habitats
    • Nelson, T. M., Rogers, T. L. & Brown, M. V. The gut bacterial community of mammals from marine and terrestrial habitats. PLoS One 8, e83655 (2013).
    • (2013) PLoS One , vol.8 , pp. e83655
    • Nelson, T.M.1    Rogers, T.L.2    Brown, M.V.3
  • 24
    • 41649100743 scopus 로고    scopus 로고
    • Faecal microbiota of a dugong (Dugong dugong) in captivity at toba aquarium
    • Tsukinowa, E. et al. Faecal microbiota of a dugong (Dugong dugong) in captivity at Toba Aquarium. J. Gen. Appl. Microbiol. 54, 25-38 (2008).
    • (2008) J. Gen. Appl. Microbiol. , vol.54 , pp. 25-38
    • Tsukinowa, E.1
  • 25
    • 84863733952 scopus 로고    scopus 로고
    • Analysis of the bacterial diversity in the faecal material of the endangered yangtze finless porpoise, neophocaena phocaenoides asiaeorientalis
    • McLaughlin, R. W., Chen, M. M., Zheng, J. S., Zhao, Q. Z. & Wang, D. Analysis of the bacterial diversity in the faecal material of the endangered Yangtze finless porpoise, Neophocaena phocaenoides asiaeorientalis. Mol. Biol. Rep. 39, 5669-5676 (2012).
    • (2012) Mol. Biol. Rep. , vol.39 , pp. 5669-5676
    • McLaughlin, R.W.1    Chen, M.M.2    Zheng, J.S.3    Zhao, Q.Z.4    Wang, D.5
  • 26
    • 84942274743 scopus 로고    scopus 로고
    • Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores
    • Sanders, J. G. et al. Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores. Nat. Commun. 6, 8285 (2015).
    • (2015) Nat. Commun. , vol.6 , pp. 8285
    • Sanders, J.G.1
  • 27
    • 31444449652 scopus 로고    scopus 로고
    • Molecular analysis of the bacterial microbiota in the human stomach
    • Bik, E. M. et al. Molecular analysis of the bacterial microbiota in the human stomach. Proc. Natl Acad. Sci. USA 103, 732-737 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 732-737
    • Bik, E.M.1
  • 28
    • 77954834323 scopus 로고    scopus 로고
    • Bacterial diversity in the oral cavity of 10 healthy individuals
    • Bik, E. M. et al. Bacterial diversity in the oral cavity of 10 healthy individuals. ISME J. 4, 962-974 (2010).
    • (2010) ISME J. , vol.4 , pp. 962-974
    • Bik, E.M.1
  • 29
    • 20544444045 scopus 로고    scopus 로고
    • Diversity of the human intestinal microbial flora
    • Eckburg, P. B. et al. Diversity of the human intestinal microbial flora. Science 308, 1635-1638 (2005).
    • (2005) Science , vol.308 , pp. 1635-1638
    • Eckburg, P.B.1
  • 30
    • 79960403250 scopus 로고    scopus 로고
    • Novel gastric helicobacters and oral campylobacters are present in captive and wild cetaceans
    • Goldman, C. G. et al. Novel gastric helicobacters and oral campylobacters are present in captive and wild cetaceans. Vet. Microbiol. 152, 138-145 (2011).
    • (2011) Vet. Microbiol. , vol.152 , pp. 138-145
    • Goldman, C.G.1
  • 31
    • 0029679925 scopus 로고    scopus 로고
    • Actinobacillus delphinicola sp. Nov., a new member of the family pasteurellaceae pohl (1979) 1981 isolated from sea mammals
    • Foster, G. et al. Actinobacillus delphinicola sp. nov., a new member of the family Pasteurellaceae Pohl (1979) 1981 isolated from sea mammals. Int. J. Syst. Bacteriol. 46, 648-652 (1996).
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 648-652
    • Foster, G.1
  • 32
    • 0029121815 scopus 로고
    • Cetobacterium ceti gen. Nov. Sp. Nov., a new gram-negative obligate anaerobe from sea mammals
    • Foster, G. et al. Cetobacterium ceti gen. nov., sp. nov., a new gram-negative obligate anaerobe from sea mammals. Lett. Appl. Microbiol. 21, 202-206 (1995).
    • (1995) Lett. Appl. Microbiol. , vol.21 , pp. 202-206
    • Foster, G.1
  • 33
    • 84876337823 scopus 로고    scopus 로고
    • Comparative analysis of the distribution of segmented filamentous bacteria in humans, mice and chickens
    • Yin, Y. S. et al. Comparative analysis of the distribution of segmented filamentous bacteria in humans, mice and chickens. ISME J. 7, 615-621 (2013).
    • (2013) ISME J. , vol.7 , pp. 615-621
    • Yin, Y.S.1
  • 34
    • 77956535323 scopus 로고    scopus 로고
    • Seal finger: A case report and review of the literature
    • White, C. P. & Jewer, D. D. Seal finger: A case report and review of the literature. Can J Plast Surg 17, 133-135 (2009).
    • (2009) Can J Plast Surg , vol.17 , pp. 133-135
    • White, C.P.1    Jewer, D.D.2
  • 35
    • 18744410918 scopus 로고    scopus 로고
    • Helicobacter cetorum sp. Nov., a urease-positive helicobacter species isolated from dolphins and whales
    • Harper, C. G. et al. Helicobacter cetorum sp. nov., a urease-positive Helicobacter species isolated from dolphins and whales. J. Clin. Microbiol. 40, 4536-4543 (2002).
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 4536-4543
    • Harper, C.G.1
  • 36
    • 1442357320 scopus 로고    scopus 로고
    • Isolation and characterization of novel helicobacter spp. from the gastric mucosa of harp seals Phoca groenlandica
    • Harper, C. G. et al. Isolation and characterization of novel Helicobacter spp. from the gastric mucosa of harp seals Phoca groenlandica. Dis. Aquat. Organ. 57, 1-9 (2003).
    • (2003) Dis. Aquat. Organ. , vol.57 , pp. 1-9
    • Harper, C.G.1
  • 37
    • 72949091232 scopus 로고    scopus 로고
    • Bacterial community variation in human body habitats across space and time
    • Costello, E. K. et al. Bacterial Community Variation in Human Body Habitats Across Space and Time. Science 326, 1694-1697 (2009).
    • (2009) Science , vol.326 , pp. 1694-1697
    • Costello, E.K.1
  • 38
    • 84866146940 scopus 로고    scopus 로고
    • Diversity, stability and resilience of the human gut microbiota
    • Lozupone, C. A., Stombaugh, J. I., Gordon, J. I., Jansson, J. K. & Knight, R. Diversity, stability and resilience of the human gut microbiota. Nature 489, 220-230 (2012).
    • (2012) Nature , vol.489 , pp. 220-230
    • Lozupone, C.A.1    Stombaugh, J.I.2    Gordon, J.I.3    Jansson, J.K.4    Knight, R.5
  • 39
    • 84860444278 scopus 로고    scopus 로고
    • The canine oral microbiome
    • Dewhirst, F. E. et al. The canine oral microbiome. PLoS ONE 7, e36067 (2012).
    • (2012) PLoS ONE , vol.7 , pp. e36067
    • Dewhirst, F.E.1
  • 40
    • 77149147410 scopus 로고    scopus 로고
    • Bacterial diversity in faeces from polar bear (Ursus maritimus) in arctic svalbard
    • Glad, T. et al. Bacterial diversity in faeces from polar bear (Ursus maritimus) in Arctic Svalbard. BMC. Microbiol. 10, 10 (2010).
    • (2010) BMC. Microbiol. , vol.10 , pp. 10
    • Glad, T.1
  • 41
    • 41849127118 scopus 로고    scopus 로고
    • Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome
    • Turnbaugh, P. J., Baeckhed, F., Fulton, L. & Gordon, J. I. Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell. Host. Microbe. 3, 213-223 (2008).
    • (2008) Cell. Host. Microbe. , vol.3 , pp. 213-223
    • Turnbaugh, P.J.1    Baeckhed, F.2    Fulton, L.3    Gordon, J.I.4
  • 42
    • 56849106496 scopus 로고    scopus 로고
    • The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
    • Dethlefsen, L., Huse, S., Sogin, M. L. & Relman, D. A. The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing. PLoS Biol. 6, e280 (2008).
    • (2008) PLoS Biol. , vol.6 , pp. e280
    • Dethlefsen, L.1    Huse, S.2    Sogin, M.L.3    Relman, D.A.4
  • 43
    • 78149464624 scopus 로고    scopus 로고
    • Phylogenetic analysis of 16S rRNA gene sequences reveals distal gut bacterial diversity in wild wolves (Canis lupus)
    • Zhang, H. H. & Chen, L. Phylogenetic analysis of 16S rRNA gene sequences reveals distal gut bacterial diversity in wild wolves (Canis lupus). Mol. Biol. Rep. 37, 4013-4022 (2010).
    • (2010) Mol. Biol. Rep. , vol.37 , pp. 4013-4022
    • Zhang, H.H.1    Chen, L.2
  • 44
    • 80055100230 scopus 로고    scopus 로고
    • Evidence of cellulose metabolism by the giant panda gut microbiome
    • Zhu, L. F., Wu, Q., Dai, J. Y., Zhang, S. N. & Wei, F. W. Evidence of cellulose metabolism by the giant panda gut microbiome. Proc. Natl Acad. Sci. USA 108, 17714-17719 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 17714-17719
    • Zhu, L.F.1    Wu, Q.2    Dai, J.Y.3    Zhang, S.N.4    Wei, F.W.5
  • 45
    • 81955167437 scopus 로고    scopus 로고
    • Molecular profiling of marine fauna: Integration of omics with environmental assessment of the world's oceans
    • Veldhoen, N., Ikonomou, M. G. & Helbing, C. C. Molecular profiling of marine fauna: integration of omics with environmental assessment of the world's oceans. Ecotoxicol. Environ. Saf. 76, 23-38 (2012).
    • (2012) Ecotoxicol. Environ. Saf. , vol.76 , pp. 23-38
    • Veldhoen, N.1    Ikonomou, M.G.2    Helbing, C.C.3
  • 46
    • 84896339094 scopus 로고    scopus 로고
    • Convergence of gut microbiomes in myrmecophagous mammals
    • Delsuc, F. et al. Convergence of gut microbiomes in myrmecophagous mammals. Mol. Ecol. 23, 1301-1317 (2014).
    • (2014) Mol. Ecol. , vol.23 , pp. 1301-1317
    • Delsuc, F.1
  • 47
    • 84873708523 scopus 로고    scopus 로고
    • The oral microbiome in health and disease
    • Wade, W. G. The oral microbiome in health and disease. Pharmacol. Res. 69, 137-143 (2013).
    • (2013) Pharmacol. Res. , vol.69 , pp. 137-143
    • Wade, W.G.1
  • 48
    • 84876110698 scopus 로고    scopus 로고
    • Microbiological survey of the human gastric ecosystem using culturing and pyrosequencing methods
    • Delgado, S., Cabrera-Rubio, R., Mira, A., Suarez, A. & Mayo, B. Microbiological survey of the human gastric ecosystem using culturing and pyrosequencing methods. Microb. Ecol. 65, 763-772 (2013).
    • (2013) Microb. Ecol. , vol.65 , pp. 763-772
    • Delgado, S.1    Cabrera-Rubio, R.2    Mira, A.3    Suarez, A.4    Mayo, B.5
  • 49
    • 84936942726 scopus 로고    scopus 로고
    • Unusual biology across a group comprising more than 15% of domain bacteria
    • Brown, C. T. et al. Unusual biology across a group comprising more than 15% of domain Bacteria. Nature 523, 208-211 (2015).
    • (2015) Nature , vol.523 , pp. 208-211
    • Brown, C.T.1
  • 50
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • Huttenhower, C. et al. Structure, function and diversity of the healthy human microbiome. Nature 486, 207-214 (2012).
    • (2012) Nature , vol.486 , pp. 207-214
    • Huttenhower, C.1
  • 51
    • 84862162269 scopus 로고    scopus 로고
    • Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples
    • Segata, N. et al. Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples. Genome Biol. 13, R42 (2012).
    • (2012) Genome Biol. , vol.13 , pp. R42
    • Segata, N.1
  • 52
    • 70349742524 scopus 로고    scopus 로고
    • The key role of segmented filamentous bacteria in the coordinated maturation of gut helper T cell responses
    • Gaboriau-Routhiau, V. et al. The key role of segmented filamentous bacteria in the coordinated maturation of gut helper T cell responses. Immunity 31, 677-689 (2009).
    • (2009) Immunity , vol.31 , pp. 677-689
    • Gaboriau-Routhiau, V.1
  • 53
    • 77149135768 scopus 로고    scopus 로고
    • Gut wall bacteria of earthworms: A natural selection process
    • Thakuria, D., Schmidt, O., Finan, D., Egan, D. & Doohan, F. M. Gut wall bacteria of earthworms: a natural selection process. ISME J. 4, 357-366 (2010).
    • (2010) ISME J. , vol.4 , pp. 357-366
    • Thakuria, D.1    Schmidt, O.2    Finan, D.3    Egan, D.4    Doohan, F.M.5
  • 54
    • 77955263252 scopus 로고    scopus 로고
    • Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts
    • Webster, N. S. et al. Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts. Environ. Microbiol. 12, 2070-2082 (2009).
    • (2009) Environ. Microbiol. , vol.12 , pp. 2070-2082
    • Webster, N.S.1
  • 56
    • 0042154222 scopus 로고    scopus 로고
    • An interdisciplinary and synthetic approach to ecological boundaries
    • Cadenasso, M. L. et al. An interdisciplinary and synthetic approach to ecological boundaries. Bioscience 8, 717-722 (2003).
    • (2003) Bioscience , vol.8 , pp. 717-722
    • Cadenasso, M.L.1
  • 57
    • 0033933320 scopus 로고    scopus 로고
    • Use of restriction fragment length polymorphism to distinguish between salmon species
    • Russell, V. J. et al. Use of restriction fragment length polymorphism to distinguish between salmon species. J. Agric. Food Chem. 48, 2184-2188 (2000).
    • (2000) J. Agric. Food Chem. , vol.48 , pp. 2184-2188
    • Russell, V.J.1
  • 59
    • 33747827586 scopus 로고    scopus 로고
    • NAST: A multiple sequence alignment server for comparative analysis of 16S rRNA genes
    • DeSantis, Jr T. Z. et al. NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes. Nucleic Acids Res. 34, W394-W399 (2006).
    • (2006) Nucleic Acids Res. , vol.34 , pp. W394-W399
    • DeSantis, T.Z.1
  • 60
    • 2542523843 scopus 로고    scopus 로고
    • ARB: A software environment for sequence data
    • Ludwig, W. et al. ARB: a software environment for sequence data. Nucleic Acids Res. 32, 1363-1371 (2004).
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1363-1371
    • Ludwig, W.1
  • 61
    • 33746061683 scopus 로고    scopus 로고
    • Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
    • DeSantis, T. Z. et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72, 5069-5072 (2006).
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 5069-5072
    • DeSantis, T.Z.1
  • 62
    • 84873739311 scopus 로고    scopus 로고
    • The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
    • Quast, C. et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 41, D590-D596 (2013).
    • (2013) Nucleic Acids Res. , vol.41 , pp. D590-D596
    • Quast, C.1
  • 63
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang, Q., Garrity, G. M., Tiedje, J. M. & Cole, J. R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73, 5261-5267 (2007).
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 64
    • 84876427223 scopus 로고    scopus 로고
    • Phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data
    • McMurdie, P. J. & Holmes, S. phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS ONE 8, e61217 (2013).
    • (2013) PLoS ONE , vol.8 , pp. e61217
    • McMurdie, P.J.1    Holmes, S.2
  • 65
    • 55949125046 scopus 로고    scopus 로고
    • Analysis of bacterial diversity in the canine duodenum, jejunum, ileum, and colon by comparative 16S rRNA gene analysis
    • Suchodolski, J. S., Camacho, J. & Steiner, J. M. Analysis of bacterial diversity in the canine duodenum, jejunum, ileum, and colon by comparative 16S rRNA gene analysis. FEMS Microbiol. Ecol. 66, 567-578 (2008).
    • (2008) FEMS Microbiol. Ecol. , vol.66 , pp. 567-578
    • Suchodolski, J.S.1    Camacho, J.2    Steiner, J.M.3
  • 66
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1
  • 68
    • 40149103278 scopus 로고    scopus 로고
    • Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
    • Hamady, M., Walker, J. J., Harris, J. K., Gold, N. J. & Knight, R. Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat. Methods 5, 235-237 (2008).
    • (2008) Nat. Methods , vol.5 , pp. 235-237
    • Hamady, M.1    Walker, J.J.2    Harris, J.K.3    Gold, N.J.4    Knight, R.5
  • 69
    • 0026499429 scopus 로고
    • Conservation evaluation and phylogenetic diversity
    • Faith, D. P. Conservation evaluation and phylogenetic diversity. Biol. Conserv. 61, 1-10 (1992).
    • (1992) Biol. Conserv. , vol.61 , pp. 1-10
    • Faith, D.P.1
  • 70
    • 34547433545 scopus 로고    scopus 로고
    • Global patterns in bacterial diversity
    • Lozupone, C. A. & Knight, R. Global patterns in bacterial diversity. Proc. Natl Acad. Sci. USA 104, 11436-11440 (2007).
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 11436-11440
    • Lozupone, C.A.1    Knight, R.2


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