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Volumn 19, Issue 3, 2008, Pages 266-273

Identifications of pathogens-a bioinformatic point of view

Author keywords

[No Author keywords available]

Indexed keywords

BIOTECHNOLOGY; COMPUTER NETWORKS; MOLECULES; TECHNOLOGY; WEB SERVICES; WORLD WIDE WEB;

EID: 45249119286     PISSN: 09581669     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.copbio.2008.04.003     Document Type: Review
Times cited : (16)

References (50)
  • 1
    • 34547850259 scopus 로고    scopus 로고
    • Advances in nucleic acid-based diagnostics of bacterial infections
    • This review describes a range of different nucleic-acid-based diagnostic methods and provides examples of the use of these methods for detection of common bacterial infections, with a focus on automated procedures.
    • Barken K.B., Haagensen J.A., and Tolker-Nielsen T. Advances in nucleic acid-based diagnostics of bacterial infections. Clin Chim Acta 384 (2007) 1-11. This review describes a range of different nucleic-acid-based diagnostic methods and provides examples of the use of these methods for detection of common bacterial infections, with a focus on automated procedures.
    • (2007) Clin Chim Acta , vol.384 , pp. 1-11
    • Barken, K.B.1    Haagensen, J.A.2    Tolker-Nielsen, T.3
  • 2
    • 85044706835 scopus 로고    scopus 로고
    • A systematic review of the clinical, public health and cost-effectiveness of rapid diagnostic tests for the detection and identification of bacterial intestinal pathogens in faeces and food
    • This is a (230 pages long) review provided by the Health Technology Assessment (HTA) program, now part of the National Institute for Health Research (NIHR) and based on studies evaluating diagnostic accuracy of rapid tests were retrieved using electronic databases and handsearching reference lists and key journals, including cost assessments. Every study is critically evaluated.
    • Abubakar I., Irvine L., Aldus C.F., Wyatt G.M., Fordham R., Schelenz S., Shepstone L., Howe A., Peck M., and Hunter P.R. A systematic review of the clinical, public health and cost-effectiveness of rapid diagnostic tests for the detection and identification of bacterial intestinal pathogens in faeces and food. Health Technol Assess 11 (2007) 1-216. This is a (230 pages long) review provided by the Health Technology Assessment (HTA) program, now part of the National Institute for Health Research (NIHR) and based on studies evaluating diagnostic accuracy of rapid tests were retrieved using electronic databases and handsearching reference lists and key journals, including cost assessments. Every study is critically evaluated.
    • (2007) Health Technol Assess , vol.11 , pp. 1-216
    • Abubakar, I.1    Irvine, L.2    Aldus, C.F.3    Wyatt, G.M.4    Fordham, R.5    Schelenz, S.6    Shepstone, L.7    Howe, A.8    Peck, M.9    Hunter, P.R.10
  • 3
    • 33846429230 scopus 로고    scopus 로고
    • Rapid detection and identification of bacterial pathogens using novel molecular technologies: infection control and beyond
    • A short (far from exhaustive) review comparing effectiveness of PNA-FISH, real-time PCR and pyrosequencing and discussing the use of FDA-cleared versus non-FDA-cleared assays (antibiotic resistance).
    • Tenover F.C. Rapid detection and identification of bacterial pathogens using novel molecular technologies: infection control and beyond. Clin Infect Dis 44 (2007) 418-423. A short (far from exhaustive) review comparing effectiveness of PNA-FISH, real-time PCR and pyrosequencing and discussing the use of FDA-cleared versus non-FDA-cleared assays (antibiotic resistance).
    • (2007) Clin Infect Dis , vol.44 , pp. 418-423
    • Tenover, F.C.1
  • 4
    • 37649020734 scopus 로고    scopus 로고
    • On the species-specificity of DNA: fifty years later
    • A short historical review of the molecular methods used to identify prokaryotes and eukaryotes.
    • Shneyer V.S. On the species-specificity of DNA: fifty years later. Biochemistry (Mosc) 72 (2007) 1377-1384. A short historical review of the molecular methods used to identify prokaryotes and eukaryotes.
    • (2007) Biochemistry (Mosc) , vol.72 , pp. 1377-1384
    • Shneyer, V.S.1
  • 5
    • 16344395488 scopus 로고    scopus 로고
    • Molecular identification of potential pathogens in water and air of a hospital therapy pool
    • Angenent L.T., Kelley S.T., St Amand A., Pace N.R., and Hernandez M.T. Molecular identification of potential pathogens in water and air of a hospital therapy pool. Proc Natl Acad Sci USA 102 (2005) 4860-4865
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 4860-4865
    • Angenent, L.T.1    Kelley, S.T.2    St Amand, A.3    Pace, N.R.4    Hernandez, M.T.5
  • 6
    • 25844500813 scopus 로고    scopus 로고
    • Real-time single-nucleotide polymorphism profiling using Taqman technology for rapid recognition of Campylobacter jejuni clonal complexes
    • Best E.L., Fox A.J., Frost J.A., and Bolton F.J. Real-time single-nucleotide polymorphism profiling using Taqman technology for rapid recognition of Campylobacter jejuni clonal complexes. J Med Microbiol 54 (2005) 919-925
    • (2005) J Med Microbiol , vol.54 , pp. 919-925
    • Best, E.L.1    Fox, A.J.2    Frost, J.A.3    Bolton, F.J.4
  • 7
    • 75149152881 scopus 로고    scopus 로고
    • A multiplex real-time PCR assay for rapid detection and differentiation of 25 bacterial and fungal pathogens from whole blood samples
    • Lehmann L.E., Hunfeld K.P., Emrich T., Haberhausen G., Wissing H., Hoeft A., and Stuber F. A multiplex real-time PCR assay for rapid detection and differentiation of 25 bacterial and fungal pathogens from whole blood samples. Med Microbiol Immunol (2007)
    • (2007) Med Microbiol Immunol
    • Lehmann, L.E.1    Hunfeld, K.P.2    Emrich, T.3    Haberhausen, G.4    Wissing, H.5    Hoeft, A.6    Stuber, F.7
  • 9
    • 34547599988 scopus 로고    scopus 로고
    • Development and application of an oligonucleotide microarray for the detection of food-borne bacterial pathogens
    • Wang X.W., Zhang L., Jin L.Q., Jin M., Shen Z.Q., An S., Chao F.H., and Li J.W. Development and application of an oligonucleotide microarray for the detection of food-borne bacterial pathogens. Appl Microbiol Biotechnol 76 (2007) 225-233
    • (2007) Appl Microbiol Biotechnol , vol.76 , pp. 225-233
    • Wang, X.W.1    Zhang, L.2    Jin, L.Q.3    Jin, M.4    Shen, Z.Q.5    An, S.6    Chao, F.H.7    Li, J.W.8
  • 10
    • 34248159346 scopus 로고    scopus 로고
    • High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment
    • Identification of pathogens in environmental samples often use parallel, multispecies detection systems, in order to detect any pathogens. In this analysis a DNA array with 2 97 851 probes was compared with 16S cloning and sequencing to evaluate the biodiversity, with the conclusion that the array was more efficient. However, pyrosequencing technologies are likely to replace both of the approaches compared in this work.
    • DeSantis T.Z., Brodie E.L., Moberg J.P., Zubieta I.X., Piceno Y.M., and Andersen G.L. High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb Ecol 53 (2007) 371-383. Identification of pathogens in environmental samples often use parallel, multispecies detection systems, in order to detect any pathogens. In this analysis a DNA array with 2 97 851 probes was compared with 16S cloning and sequencing to evaluate the biodiversity, with the conclusion that the array was more efficient. However, pyrosequencing technologies are likely to replace both of the approaches compared in this work.
    • (2007) Microb Ecol , vol.53 , pp. 371-383
    • DeSantis, T.Z.1    Brodie, E.L.2    Moberg, J.P.3    Zubieta, I.X.4    Piceno, Y.M.5    Andersen, G.L.6
  • 12
    • 38849105482 scopus 로고    scopus 로고
    • Visual detection of labeled oligonucleotides using visible-light-polymerization-based amplification
    • Hansen R.R., Sikes H.D., and Bowman C.N. Visual detection of labeled oligonucleotides using visible-light-polymerization-based amplification. Biomacromolecules 9 (2008) 355-362
    • (2008) Biomacromolecules , vol.9 , pp. 355-362
    • Hansen, R.R.1    Sikes, H.D.2    Bowman, C.N.3
  • 13
    • 38949142312 scopus 로고    scopus 로고
    • Application of a microsphere-based array for rapid identification of Acinetobacter spp. with distinct antimicrobial susceptibilities
    • Lin Y.C., Sheng W.H., Chang S.C., Wang J.T., Chen Y.C., Wu R.J., Hsia K.C., and Li S.Y. Application of a microsphere-based array for rapid identification of Acinetobacter spp. with distinct antimicrobial susceptibilities. J Clin Microbiol 46 (2008) 612-617
    • (2008) J Clin Microbiol , vol.46 , pp. 612-617
    • Lin, Y.C.1    Sheng, W.H.2    Chang, S.C.3    Wang, J.T.4    Chen, Y.C.5    Wu, R.J.6    Hsia, K.C.7    Li, S.Y.8
  • 14
    • 33845441214 scopus 로고    scopus 로고
    • Comparison of amplicon-sequencing, pyrosequencing and real-time PCR for detection of YMDD mutants in patients with chronic hepatitis B
    • Yang Z.J., Tu M.Z., Liu J., Wang X.L., and Jin H.Z. Comparison of amplicon-sequencing, pyrosequencing and real-time PCR for detection of YMDD mutants in patients with chronic hepatitis B. World J Gastroenterol 12 (2006) 7192-7196
    • (2006) World J Gastroenterol , vol.12 , pp. 7192-7196
    • Yang, Z.J.1    Tu, M.Z.2    Liu, J.3    Wang, X.L.4    Jin, H.Z.5
  • 15
    • 33746986977 scopus 로고    scopus 로고
    • The comparison of pyrosequencing molecular Gram stain, culture, and conventional Gram stain for diagnosing orthopaedic infections
    • Sequencing more efficient than staining to differentiate Gram-positive from Gram-negative bacteria. Who would have bet on it in 2005?
    • Kobayashi N., Bauer T.W., Tuohy M.J., Lieberman I.H., Krebs V., Togawa D., Fujishiro T., and Procop G.W. The comparison of pyrosequencing molecular Gram stain, culture, and conventional Gram stain for diagnosing orthopaedic infections. J Orthop Res 24 (2006) 1641-1649. Sequencing more efficient than staining to differentiate Gram-positive from Gram-negative bacteria. Who would have bet on it in 2005?
    • (2006) J Orthop Res , vol.24 , pp. 1641-1649
    • Kobayashi, N.1    Bauer, T.W.2    Tuohy, M.J.3    Lieberman, I.H.4    Krebs, V.5    Togawa, D.6    Fujishiro, T.7    Procop, G.W.8
  • 17
    • 42049111815 scopus 로고    scopus 로고
    • Survey of bacterial diversity in chronic wounds using Pyrosequencing, DGGE, and full ribosome shotgun sequencing
    • 10.1186/1471-2180-8-43
    • Dowd S.E., Sun Y., Secor P.R., Rhoads D.D., Wolcott B.M., James G.A., and Wolcott R.D. Survey of bacterial diversity in chronic wounds using Pyrosequencing, DGGE, and full ribosome shotgun sequencing. BMC Microbiol 8 (2008) 43 10.1186/1471-2180-8-43
    • (2008) BMC Microbiol , vol.8 , pp. 43
    • Dowd, S.E.1    Sun, Y.2    Secor, P.R.3    Rhoads, D.D.4    Wolcott, B.M.5    James, G.A.6    Wolcott, R.D.7
  • 18
    • 33746456863 scopus 로고    scopus 로고
    • Bacterial genotyping by 16S rRNA mass cataloging
    • 10.1186/1471-2105-7-321
    • Jackson G.W., McNichols R.J., Fox G.E., and Willson R.C. Bacterial genotyping by 16S rRNA mass cataloging. BMC Bioinformatics 7 (2006) 321 10.1186/1471-2105-7-321
    • (2006) BMC Bioinformatics , vol.7 , pp. 321
    • Jackson, G.W.1    McNichols, R.J.2    Fox, G.E.3    Willson, R.C.4
  • 21
    • 41149083635 scopus 로고    scopus 로고
    • Remote access to ACNUC nucleotide and protein sequence databases at PBIL
    • Gouy M., and Delmotte S. Remote access to ACNUC nucleotide and protein sequence databases at PBIL. Biochimie 90 (2008) 555-562
    • (2008) Biochimie , vol.90 , pp. 555-562
    • Gouy, M.1    Delmotte, S.2
  • 22
    • 0029967362 scopus 로고    scopus 로고
    • SRS: information retrieval system for molecular biology data banks
    • Etzold T., Ulyanov A., and Argos P. SRS: information retrieval system for molecular biology data banks. Methods Enzymol 266 (1996) 114-128
    • (1996) Methods Enzymol , vol.266 , pp. 114-128
    • Etzold, T.1    Ulyanov, A.2    Argos, P.3
  • 23
    • 0030010970 scopus 로고    scopus 로고
    • Entrez: molecular biology database and retrieval system
    • Schuler G.D., Epstein J.A., Ohkawa H., and Kans J.A. Entrez: molecular biology database and retrieval system. Methods Enzymol 266 (1996) 141-162
    • (1996) Methods Enzymol , vol.266 , pp. 141-162
    • Schuler, G.D.1    Epstein, J.A.2    Ohkawa, H.3    Kans, J.A.4
  • 24
    • 0032988850 scopus 로고    scopus 로고
    • BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs
    • Thompson J.D., Plewniak F., and Poch O. BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs. Bioinformatics 15 (1999) 87-88
    • (1999) Bioinformatics , vol.15 , pp. 87-88
    • Thompson, J.D.1    Plewniak, F.2    Poch, O.3
  • 25
    • 38749120247 scopus 로고    scopus 로고
    • Aligning sequences by minimum description length
    • Conery J.S. Aligning sequences by minimum description length. EURASIP J Bioinform Syst Biol (2007) 72936
    • (2007) EURASIP J Bioinform Syst Biol , pp. 72936
    • Conery, J.S.1
  • 26
    • 33746357860 scopus 로고    scopus 로고
    • Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using ARB software package
    • 10.1186/1471-2105-7-240
    • Kumar Y., Westram R., Kipfer P., Meier H., and Ludwig W. Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using ARB software package. BMC Bioinformatics 7 (2006) 240 10.1186/1471-2105-7-240
    • (2006) BMC Bioinformatics , vol.7 , pp. 240
    • Kumar, Y.1    Westram, R.2    Kipfer, P.3    Meier, H.4    Ludwig, W.5
  • 28
    • 0344666688 scopus 로고    scopus 로고
    • Horizontal transfer of segments of the 16S rRNA genes between species of the Streptococcus anginosus group
    • Schouls L.M., Schot C.S., and Jacobs J.A. Horizontal transfer of segments of the 16S rRNA genes between species of the Streptococcus anginosus group. J Bacteriol 185 (2003) 7241-7246
    • (2003) J Bacteriol , vol.185 , pp. 7241-7246
    • Schouls, L.M.1    Schot, C.S.2    Jacobs, J.A.3
  • 29
    • 24344510265 scopus 로고    scopus 로고
    • Discordant 16S and 23S rRNA gene phylogenies for the genus Helicobacter: implications for phylogenetic inference and systematics
    • Dewhirst F.E., Shen Z., Scimeca M.S., Stokes L.N., Boumenna T., Chen T., Paster B.J., and Fox J.G. Discordant 16S and 23S rRNA gene phylogenies for the genus Helicobacter: implications for phylogenetic inference and systematics. J Bacteriol 187 (2005) 6106-6118
    • (2005) J Bacteriol , vol.187 , pp. 6106-6118
    • Dewhirst, F.E.1    Shen, Z.2    Scimeca, M.S.3    Stokes, L.N.4    Boumenna, T.5    Chen, T.6    Paster, B.J.7    Fox, J.G.8
  • 30
    • 34548696115 scopus 로고    scopus 로고
    • 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls
    • Janda J.M., and Abbott S.L. 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls. J Clin Microbiol 45 (2007) 2761-2764
    • (2007) J Clin Microbiol , vol.45 , pp. 2761-2764
    • Janda, J.M.1    Abbott, S.L.2
  • 31
    • 3042826875 scopus 로고    scopus 로고
    • Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins
    • Santos S.R., and Ochman H. Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins. Environ Microbiol 6 (2004) 754-759
    • (2004) Environ Microbiol , vol.6 , pp. 754-759
    • Santos, S.R.1    Ochman, H.2
  • 33
    • 34548816493 scopus 로고    scopus 로고
    • Extensive genomic diversity and selective conservation of virulence-determinants in enterohemorrhagic Escherichia coli strains of O157 and non-O157 serotypes
    • 10.1186/gb-2007-8-7-r138. A systematic whole genome comparison between O157 and non-O157 EHEC strains using microarray and whole genome PCR scanning analyses. An example of modern analyses and comparisons of whole genomes to understand phenotypes and their evolutions in time.
    • Ogura Y., Ooka T., Asadulghani, Terajima J., Nougayrede J.P., Kurokawa K., Tashiro K., Tobe T., Nakayama K., Kuhara S., et al. Extensive genomic diversity and selective conservation of virulence-determinants in enterohemorrhagic Escherichia coli strains of O157 and non-O157 serotypes. Genome Biol 8 (2007) R138 10.1186/gb-2007-8-7-r138. A systematic whole genome comparison between O157 and non-O157 EHEC strains using microarray and whole genome PCR scanning analyses. An example of modern analyses and comparisons of whole genomes to understand phenotypes and their evolutions in time.
    • (2007) Genome Biol , vol.8
    • Ogura, Y.1    Ooka, T.2    Asadulghani3    Terajima, J.4    Nougayrede, J.P.5    Kurokawa, K.6    Tashiro, K.7    Tobe, T.8    Nakayama, K.9    Kuhara, S.10
  • 35
    • 33749260708 scopus 로고    scopus 로고
    • Vibrio cholerae virulence regulator-coordinated evasion of host immunity
    • Hsiao A., Liu Z., Joelsson A., and Zhu J. Vibrio cholerae virulence regulator-coordinated evasion of host immunity. Proc Natl Acad Sci USA 103 (2006) 14542-14547
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 14542-14547
    • Hsiao, A.1    Liu, Z.2    Joelsson, A.3    Zhu, J.4
  • 36
    • 34347393497 scopus 로고    scopus 로고
    • Genetic diversity of toxigenic and nontoxigenic Vibrio cholerae serogroups O1 and O139 revealed by array-based comparative genomic hybridization
    • Pang B., Yan M., Cui Z., Ye X., Diao B., Ren Y., Gao S., Zhang L., and Kan B. Genetic diversity of toxigenic and nontoxigenic Vibrio cholerae serogroups O1 and O139 revealed by array-based comparative genomic hybridization. J Bacteriol 189 (2007) 4837-4849
    • (2007) J Bacteriol , vol.189 , pp. 4837-4849
    • Pang, B.1    Yan, M.2    Cui, Z.3    Ye, X.4    Diao, B.5    Ren, Y.6    Gao, S.7    Zhang, L.8    Kan, B.9
  • 37
    • 33846117653 scopus 로고    scopus 로고
    • Standardized nonculture techniques recommended for European reference laboratories
    • Fox A.J., Taha M.K., and Vogel U. Standardized nonculture techniques recommended for European reference laboratories. FEMS Microbiol Rev 31 (2007) 84-88
    • (2007) FEMS Microbiol Rev , vol.31 , pp. 84-88
    • Fox, A.J.1    Taha, M.K.2    Vogel, U.3
  • 38
    • 33846033611 scopus 로고    scopus 로고
    • The secret life of the multilocus sequence type
    • Turner K.M., and Feil E.J. The secret life of the multilocus sequence type. Int J Antimicrob Agents 29 (2007) 129-135
    • (2007) Int J Antimicrob Agents , vol.29 , pp. 129-135
    • Turner, K.M.1    Feil, E.J.2
  • 40
    • 40449086789 scopus 로고    scopus 로고
    • Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium)
    • Martens M., Dawyndt P., Coopman R., Gillis M., De Vos P., and Willems A. Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium). Int J Syst Evol Microbiol 58 (2008) 200-214
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 200-214
    • Martens, M.1    Dawyndt, P.2    Coopman, R.3    Gillis, M.4    De Vos, P.5    Willems, A.6
  • 41
    • 34250677699 scopus 로고    scopus 로고
    • Gene sequence phylogenies of the family microbacteriaceae
    • Stackebrandt E., Brambilla E., and Richert K. Gene sequence phylogenies of the family microbacteriaceae. Curr Microbiol 55 (2007) 42-46
    • (2007) Curr Microbiol , vol.55 , pp. 42-46
    • Stackebrandt, E.1    Brambilla, E.2    Richert, K.3
  • 42
    • 40449120034 scopus 로고    scopus 로고
    • A multilocus phylogeny of the Streptomyces griseus 16S rRNA gene clade: use of multilocus sequence analysis for streptomycete systematics
    • Guo Y., Zheng W., Rong X., and Huang Y. A multilocus phylogeny of the Streptomyces griseus 16S rRNA gene clade: use of multilocus sequence analysis for streptomycete systematics. Int J Syst Evol Microbiol 58 (2008) 149-159
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 149-159
    • Guo, Y.1    Zheng, W.2    Rong, X.3    Huang, Y.4
  • 44
    • 33750995256 scopus 로고    scopus 로고
    • Introduction of a boost of Legionella pneumophila into a stagnant-water model by heat treatment
    • Vervaeren H., Temmerman R., Devos L., Boon N., and Verstraete W. Introduction of a boost of Legionella pneumophila into a stagnant-water model by heat treatment. FEMS Microbiol Ecol 58 (2006) 583-592
    • (2006) FEMS Microbiol Ecol , vol.58 , pp. 583-592
    • Vervaeren, H.1    Temmerman, R.2    Devos, L.3    Boon, N.4    Verstraete, W.5
  • 45
    • 0031977470 scopus 로고    scopus 로고
    • Sequence-based classification scheme for the genus Legionella targeting the mip gene
    • Ratcliff R.M., Lanser J.A., Manning P.A., and Heuzenroeder M.W. Sequence-based classification scheme for the genus Legionella targeting the mip gene. J Clin Microbiol 36 (1998) 1560-1567
    • (1998) J Clin Microbiol , vol.36 , pp. 1560-1567
    • Ratcliff, R.M.1    Lanser, J.A.2    Manning, P.A.3    Heuzenroeder, M.W.4
  • 46
    • 13244267001 scopus 로고    scopus 로고
    • mlstdbNet-distributed multi-locus sequence typing (MLST) databases
    • 10.1186/1471-2105-5-86
    • Jolley K.A., Chan M.S., and Maiden M.C. mlstdbNet-distributed multi-locus sequence typing (MLST) databases. BMC Bioinformatics 5 (2004) 86 10.1186/1471-2105-5-86
    • (2004) BMC Bioinformatics , vol.5 , pp. 86
    • Jolley, K.A.1    Chan, M.S.2    Maiden, M.C.3
  • 47
    • 33750314083 scopus 로고    scopus 로고
    • TreeDyn: towards dynamic graphics and annotations for analyses of trees
    • 10.1186/1471-2105-7-439
    • Chevenet F., Brun C., Bañuls A.-L., Jacq B., and Christen R. TreeDyn: towards dynamic graphics and annotations for analyses of trees. BMC Bioinformatics 7 (2006) 439-448 10.1186/1471-2105-7-439
    • (2006) BMC Bioinformatics , vol.7 , pp. 439-448
    • Chevenet, F.1    Brun, C.2    Bañuls, A.-L.3    Jacq, B.4    Christen, R.5
  • 48
    • 33645027388 scopus 로고    scopus 로고
    • Querying the public databases for sequences using complex keywords contained in the feature lines
    • 10.1186/1471-2105-7-45
    • Croce O., Lamarre M., and Christen R. Querying the public databases for sequences using complex keywords contained in the feature lines. BMC Bioinformatics 7 (2006) 45 10.1186/1471-2105-7-45
    • (2006) BMC Bioinformatics , vol.7 , pp. 45
    • Croce, O.1    Lamarre, M.2    Christen, R.3
  • 49
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li W., and Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22 (2006) 1658-1659
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 50
    • 25444472044 scopus 로고    scopus 로고
    • transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
    • 10.1186/1471-2105-6-156
    • Bininda-Emonds O.R. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences. BMC Bioinformatics 6 (2005) 156 10.1186/1471-2105-6-156
    • (2005) BMC Bioinformatics , vol.6 , pp. 156
    • Bininda-Emonds, O.R.1


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