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Volumn 52, Issue 5, 2014, Pages 1375-1381

Identifying Neisseria species by use of the 50S Ribosomal protein L6 (rplF) gene

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S; BACTERIAL DNA; RIBOSOMAL PROTEIN L6; RIBOSOME PROTEIN;

EID: 84899550242     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.03529-13     Document Type: Article
Times cited : (54)

References (39)
  • 2
    • 0035092344 scopus 로고    scopus 로고
    • Diagnostics of Neisseriaceae and Moraxellaceae by ribosomal DNA sequencing: Ribosomal differentiation of medical microorganisms
    • Harmsen D, Singer C, Rothganger J, Tonjum T, de Hoog GS, Shah H, Albert J, Frosch M. 2001. Diagnostics of Neisseriaceae and Moraxellaceae by ribosomal DNA sequencing: ribosomal differentiation of medical microorganisms. J. Clin. Microbiol. 39:936-942. http://dx.doi.org/10.1128/JCM.39.3.936-942.2001.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 936-942
    • Harmsen, D.1    Singer, C.2    Rothganger, J.3    Tonjum, T.4    De Hoog, G.S.5    Shah, H.6    Albert, J.7    Frosch, M.8
  • 4
    • 84861889976 scopus 로고    scopus 로고
    • A genomic approach to bacterial taxonomy: An examination and proposed reclassification of species within the genus Neisseria
    • Bennett JS, Jolley KA, Earle SG, Corton C, Bentley SD, Parkhill J, Maiden MC. 2012. A genomic approach to bacterial taxonomy: an examination and proposed reclassification of species within the genus Neisseria. Microbiology 158:1570-1580. http://dx.doi.org/10.1099/mic.0.056077-0.
    • (2012) Microbiology , vol.158 , pp. 1570-1580
    • Bennett, J.S.1    Jolley, K.A.2    Earle, S.G.3    Corton, C.4    Bentley, S.D.5    Parkhill, J.6    Maiden, M.C.7
  • 5
    • 0036084147 scopus 로고    scopus 로고
    • RIDOM: Ribosomal differentiation of medical microorganisms database
    • Harmsen D, Rothganger J, Frosch M, Albert J. 2002. RIDOM: ribosomal differentiation of medical microorganisms database. Nucleic Acids Res. 30:416-417. http://dx.doi.org/10.1093/nar/30.1.416.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 416-417
    • Harmsen, D.1    Rothganger, J.2    Frosch, M.3    Albert, J.4
  • 6
    • 84884807566 scopus 로고    scopus 로고
    • Description of an unusual N meningitidis isolate containing and expressing N gonorrhoeae-specific 16S rRNA gene sequences
    • Walcher M, Skvoretz R, Montgomery-Fullerton M, Jonas V, Brentano S. 2013. Description of an unusual N. meningitidis isolate containing and expressing N. gonorrhoeae-specific 16S rRNA gene sequences. J. Clin. Microbiol. 51:3199-3206. http://dx.doi.org/10.1128/JCM.00309-13.
    • (2013) J. Clin. Microbiol. , vol.51 , pp. 3199-3206
    • Walcher, M.1    Skvoretz, R.2    Montgomery-Fullerton, M.3    Jonas, V.4    Brentano, S.5
  • 8
    • 84885218313 scopus 로고    scopus 로고
    • Genome sequence analyses show that Neisseria oralis is the same species as "Neisseria mucosa var heidelbergensis"
    • Bennett JS, Jolley KA, Maiden MC. 2013. Genome sequence analyses show that Neisseria oralis is the same species as "Neisseria mucosa var. heidelbergensis." Int. J. Syst. Evol. Microbiol. 63:3920-3926. http://dx.doi.org/10.1099/ijs.0.052431-0.
    • (2013) Int. J. Syst. Evol. Microbiol. , vol.63 , pp. 3920-3926
    • Bennett, J.S.1    Jolley, K.A.2    Maiden, M.C.3
  • 9
    • 78650827616 scopus 로고    scopus 로고
    • BIGSdb: Scalable analysis of bacterial genome variation at the population level
    • Jolley KA, Maiden MC. 2010. BIGSdb: scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 11:595. http://dx.doi.org/10.1186/1471-2105-11-595.
    • (2010) BMC Bioinformatics , vol.11 , pp. 595
    • Jolley, K.A.1    Maiden, M.C.2
  • 10
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797. http://dx.doi.org/10.1093/ nar/gkh340.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 11
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739. http://dx.doi.org/10.1093/molbev/msr121.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 12
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120. http://dx.doi.org/10.1007/BF01731581.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 13
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791. http://dx.doi.org/10.2307/2408678.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 14
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452. http://dx.doi.org/10. 1093/bioinformatics/btp187.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 15
    • 84862245279 scopus 로고    scopus 로고
    • Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction
    • Ye J, Coulouris G, Zaretskaya I, Cutcutache I, Rozen S, Madden TL. 2012. Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction. BMCBioinformatics 13:134. http://dx.doi.org/10.1186/1471-2105-13-134.
    • (2012) BMCBioinformatics , vol.13 , pp. 134
    • Ye, J.1    Coulouris, G.2    Zaretskaya, I.3    Cutcutache, I.4    Rozen, S.5    Madden, T.L.6
  • 16
    • 0025895588 scopus 로고
    • The linear PCR reaction: A simple and robust method for sequencing amplified rRNA genes
    • Embley TM. 1991. The linear PCR reaction: a simple and robust method for sequencing amplified rRNA genes. Lett. Appl. Microbiol. 13:171-174. http://dx.doi.org/10.1111/j.1472-765X.1991.tb00600.x.
    • (1991) Lett. Appl. Microbiol. , vol.13 , pp. 171-174
    • Embley, T.M.1
  • 17
    • 0030158571 scopus 로고    scopus 로고
    • The Staden sequence analysis package
    • Staden R. 1996. The Staden sequence analysis package. Mol. Biotechnol. 5:233-241. http://dx.doi.org/10.1007/BF02900361.
    • (1996) Mol. Biotechnol. , vol.5 , pp. 233-241
    • Staden, R.1
  • 20
    • 0022105489 scopus 로고
    • First isolation of Neisseria polysacchareae species nova in the Federal Republic of Germany
    • Berger U. 1985. First isolation of Neisseria polysacchareae species nova in the Federal Republic of Germany. Eur. J. Clin. Microbiol. 4:431-433. http://dx.doi.org/10.1007/BF02148705.
    • (1985) Eur. J. Clin. Microbiol. , vol.4 , pp. 431-433
    • Berger, U.1
  • 21
    • 33947357634 scopus 로고    scopus 로고
    • Genus I. Neisseria
    • Garrity GM, Brenner DJ, Krieg NR, Staley JR ed, 2nd ed, Springer-Verlag, New York, NY
    • Tonjum T. 2005. Genus I. Neisseria, p 777-798. In Garrity GM, Brenner DJ, Krieg NR, Staley JR (ed), Bergey's manual of systematic bacteriology, 2nd ed, vol 2. Springer-Verlag, New York, NY.
    • (2005) Bergey's Manual of Systematic Bacteriology , vol.2 , pp. 777-798
    • Tonjum, T.1
  • 22
    • 0014979350 scopus 로고
    • Neisseria mucosa var heidelbergensis
    • German.
    • Berger U. 1971. Neisseria mucosa var. heidelbergensis. Z Med. Mikrobiol. Immunol. 156:154-158. (In German.) http://dx.doi.org/10.1007/BF02124646.
    • (1971) Z Med. Mikrobiol. Immunol. , vol.156 , pp. 154-158
    • Berger, U.1
  • 24
    • 0023003394 scopus 로고
    • Deoxyribonucleic acid relatedness among Neisseria gonorrhoeae, N meningitidis, N lactamica, N cinerea and "Neisseria polysaccharea"
    • Guibourdenche M, Popoff MY, Riou JY. 1986. Deoxyribonucleic acid relatedness among Neisseria gonorrhoeae, N. meningitidis, N. lactamica, N. cinerea and "Neisseria polysaccharea." Ann. Inst. Pasteur. Microbiol. 137B:177-185.
    • (1986) Ann. Inst. Pasteur. Microbiol. , vol.137 B , pp. 177-185
    • Guibourdenche, M.1    Popoff, M.Y.2    Riou, J.Y.3
  • 26
    • 84892548792 scopus 로고    scopus 로고
    • Homologous recombination drives both sequence diversity and gene content variation in Neisseria meningitidis
    • Kong Y, Ma JH, Warren K, Tsang RS, Low DE, Jamieson FB, Alexander DC, Hao W. 2013. Homologous recombination drives both sequence diversity and gene content variation in Neisseria meningitidis. Genome Biol. Evol. 5:1611-1627. http://dx.doi.org/10.1093/gbe/evt116.
    • (2013) Genome Biol. Evol. , vol.5 , pp. 1611-1627
    • Kong, Y.1    Ma, J.H.2    Warren, K.3    Tsang, R.S.4    Low, D.E.5    Jamieson, F.B.6    Alexander, D.C.7    Hao, W.8
  • 27
    • 55049083674 scopus 로고    scopus 로고
    • Population genomics: Diversity and virulence in the Neisseria
    • Maiden MC. 2008. Population genomics: diversity and virulence in the Neisseria. Curr. Opin. Microbiol. 11:467-471. http://dx.doi.org/10.1016/j.mib. 2008.09.002.
    • (2008) Curr. Opin. Microbiol. , vol.11 , pp. 467-471
    • Maiden, M.C.1
  • 28
    • 0021990052 scopus 로고
    • Proctitis associated with Neisseria cinerea misidentified as Neisseria gonorrhoeae in a child
    • Dossett JH, Appelbaum PC, Knapp JS, Totten PA. 1985. Proctitis associated with Neisseria cinerea misidentified as Neisseria gonorrhoeae in a child. J. Clin. Microbiol. 21:575-577.
    • (1985) J. Clin. Microbiol. , vol.21 , pp. 575-577
    • Dossett, J.H.1    Appelbaum, P.C.2    Knapp, J.S.3    Totten, P.A.4
  • 29
    • 0021330915 scopus 로고
    • Characterization of Neisseria cinerea, a nonpathogenic species isolated on Martin-Lewis medium selective for pathogenic Neisseria spp
    • Knapp JS, Totten PA, Mulks MH, Minshew BH. 1984. Characterization of Neisseria cinerea, a nonpathogenic species isolated on Martin-Lewis medium selective for pathogenic Neisseria spp J. Clin. Microbiol. 19:63-67.
    • (1984) J. Clin. Microbiol. , vol.19 , pp. 63-67
    • Knapp, J.S.1    Totten, P.A.2    Mulks, M.H.3    Minshew, B.H.4
  • 31
    • 84862173705 scopus 로고    scopus 로고
    • A core human microbiome as viewed through 16S rRNA sequence clusters
    • Huse SM, Ye Y, Zhou Y, Fodor AA. 2012. A core human microbiome as viewed through 16S rRNA sequence clusters. PLoS One 7:e34242. http://dx.doi.org/10. 1371/journal.pone.0034242.
    • (2012) PLoS One , vol.7
    • Huse, S.M.1    Ye, Y.2    Zhou, Y.3    Fodor, A.A.4
  • 32
    • 82555183004 scopus 로고    scopus 로고
    • The Human Oral Microbiome Database: A web accessible resource for investigating oral microbe taxonomic and genomic information
    • Chen T, Yu WH, Izard J, Baranova OV, Lakshmanan A, Dewhirst FE. 2010. The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information. Database 2010:baq013. http://dx.doi.org/10.1093/database/baq013.
    • (2010) Database , vol.2010
    • Chen, T.1    Yu, W.H.2    Izard, J.3    Baranova, O.V.4    Lakshmanan, A.5    Dewhirst, F.E.6
  • 33
    • 78549285666 scopus 로고    scopus 로고
    • Independent evolution of the core and accessory gene sets in the genus Neisseria: Insights gained from the genome of Neisseria lactamica isolate 020-06
    • Bennett JS, Bentley SD, Vernikos GS, Quail MA, Cherevach I, White B, Parkhill J, Maiden M C J. 2010. Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06. BMC Genomics 11:652. http://dx.doi.org/10.1186/1471- 2164-11-652.
    • (2010) BMC Genomics , vol.11 , pp. 652
    • Bennett, J.S.1    Bentley, S.D.2    Vernikos, G.S.3    Quail, M.A.4    Cherevach, I.5    White, B.6    Parkhill, J.7    Maiden, M.C.J.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.