Electrical-biological hybrid system for CO2 reduction

Metabolic Engineering

Volumn 47, Issue , 2018, Pages 211-218

  Tashiro, Yohei ^a,b,e   Hirano, Shinichi ^c   Matson, Morgan M ^b   Atsumi, Shota ^b   Kondo, Akihiko ^a,d  

^a RIKEN Center for Sustainable Resource Science   (Japan)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c CENTRAL RESEARCH INSTITUTE OF ELECTRIC POWER INDUSTRY   (Japan)

^d KOBE UNIVERSITY   (Japan)

^e Health Functional Research   (Japan)

Author keywords

CO2 fixation; Electrochemical biological hybrid system; Formate fixation

Indexed keywords

AMINO ACIDS; ELECTROCATALYSIS; ELECTROCATALYSTS; ESCHERICHIA COLI; HYBRID SYSTEMS;

AUXOTROPHY; CARBON FLUXES; CHEMICAL PRODUCTION; CO2 FIXATION; CO2 REDUCTION; L-SERINE; PYRUVATES; USER FRIENDLY;

CARBON DIOXIDE;

CARBON DIOXIDE; FORMIC ACID; GLYCINE; PYRUVIC ACID; SERINE; FORMIC ACID DERIVATIVE;

ARTICLE; AUXOTROPHY; BACTERIAL STRAIN; BIOLOGY; BIOSYNTHESIS; CARBON METABOLISM; CATALYSIS; CATALYST; CONTROLLED STUDY; ELECTRICITY; ELECTROCATALYSIS; ELECTROCHEMICAL BIOLOGICAL HYBRID SYSTEM; ELECTROCHEMISTRY; ESCHERICHIA COLI; GENETIC STABILITY; NONHUMAN; PRIORITY JOURNAL; REDUCTION (CHEMISTRY); GENETICS; METABOLIC ENGINEERING; METABOLISM; OXIDATION REDUCTION REACTION; TRANSGENIC MICROORGANISM;

CARBON DIOXIDE; ESCHERICHIA COLI; FORMATES; GLYCINE; METABOLIC ENGINEERING; MICROORGANISMS, GENETICALLY-MODIFIED; OXIDATION-REDUCTION; PYRUVIC ACID; SERINE;

EID: 85044578752     PISSN: 10967176     EISSN: 10967184     Source Type: Journal    
DOI: 10.1016/j.ymben.2018.03.015     Document Type: Article

References (44)

1. Bar-Even, A., Formate assimilation: the metabolic architecture of natural and synthetic pathways. Biochemistry 55 (2016), 3851–3863.
2. Bar-Even, A., Noor, E., Lewis, N.E., Milo, R., Design and analysis of synthetic carbon fixation pathways. Proc. Natl. Acad. Sci. USA 107 (2010), 8889–8894.
3. Bar-Even, A., Noor, E., Milo, R., A survey of carbon fixation pathways through a quantitative lens. J. Exp. Bot. 63 (2012), 2325–2342.
4. Bar-Even, A., Noor, E., Flamholz, A., Milo, R., Design and analysis of metabolic pathways supporting formatotrophic growth for electricity-dependent cultivation of microbes. Biochim. Biophys. Acta 1827 (2013), 1039–1047.
5. BP, 2017. BP Statistical Review of World Energy.
6. Case, A.E., Atsumi, S., Cyanobacterial chemical production. J. Biotechnol. 231 (2016), 106–114.
7. Claassens, N.J., Sousa, D.Z., Dos Santos, V.A., de Vos, W.M., van der Oost, J., Harnessing the power of microbial autotrophy. Nat. Rev. Microbiol. 14 (2016), 692–706.
8. Clark, J.E., Ljungdahl, L.G., Purification and properties of 5,10-methenyltetrahydrofolate cyclohydrolase from Clostridium formicoaceticum. J. Biol. Chem. 257 (1982), 3833–3836.
9. D'Ari, L., Rabinowitz, J.C., Purification, characterization, cloning, and amino acid sequence of the bifunctional enzyme 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase from Escherichia coli. J. Biol. Chem. 266 (1991), 23953–23958.
10. Datsenko, K.A., Wanner, B.L., One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97 (2000), 6640–6645.
11. 2-fixation pathways to support synthetic biology strategies for production of fuels and chemicals. Curr. Opin. Chem. Eng. 1 (2012), 380–395.
12. 2 exchange system. J. Biol. Chem. 259 (1984), 6085–6089.
13. Goeppert, A., Czaun, M., Jones, J.P., Prakash, G.K.S., Olah, G.A., Recycling of carbon dioxide to methanol and derived products - closing the loop. Chem. Soc. Rev. 43 (2014), 7995–8048.
14. Hirano, S., Matsumoto, N., Analysis of a bio-electrochemical reactor containing carbon fiber textiles for the anaerobic digestion of tomato plant residues. Bioresour. Technol. 249 (2018), 809–817.
15. Jiang, Y., et al. Multigene editing in the Escherichia coli genome via the CRISPR-Cas9 system. Appl. Environ. Microbiol. 81 (2015), 2506–2514.
16. Kikuchi, G., The glycine cleavage system: composition, reaction mechanism, and physiological significance. Mol. Cell Biochem. 1 (1973), 169–187.
17. Kikuchi, G., Motokawa, Y., Yoshida, T., Hiraga, K., Glycine cleavage system: reaction mechanism, physiological significance, and hyperglycinemia. Proc. Jpn Acad. Ser. B 84 (2008), 246–263.
18. Kopke, M., et al. Clostridium ljungdahlii represents a microbial production platform based on syngas. Proc. Natl. Acad. Sci. USA 107 (2010), 13087–13092.
19. LaBelle, E.V., May, H.D., Energy efficiency and productivity enhancement of microbial electrosynthesis of acetate. Front. Microbiol., 8, 2017, 756.
20. 2 to higher alcohols. Science, 335, 2012, 1596.
21. 2 reduction efficiencies exceeding photosynthesis. Science 352 (2016), 1210–1213.
22. Ljungdahl, L.G., O'Brien, W.E., Moore, M.R., Liu, M.T., Methylenetetrahydrofolate dehydrogenase from Clostridium formicoaceticum and methylenetetrahydrofolate dehydrogenase, methenyltetrahydrofolate cyclohydrolase (combined) from Clostridium thermoaceticum. Methods Enzymol. 66 (1980), 599–609.
23. Lovley, D.R., Powering microbes with electricity: direct electron transfer from electrodes to microbes. Environ. Microbiol. Rep. 3 (2011), 27–35.
24. Lutz, R., Bujard, H., Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. Nucleic Acids Res. 25 (1997), 1203–1210.
25. Lynd, L.R., Cushman, J.H., Nichols, R.J., Wyman, C.E., Fuel ethanol from cellulosic biomass. Science 251 (1991), 1318–1323.
26. de Mata, Z.S., Rabinowitz, J.C., Formyl-methenyl-methylenetetrahydrofolate synthetase(combined) from yeast. Biochemical characterization of the protein from an ade3 mutant lacking the formyltetrahydrofolate synthetase function. J. Biol. Chem. 255 (1980), 2569–2577.
27. Nybo, S.E., Khan, N.E., Woolston, B.M., Curtis, W.R., Metabolic engineering in chemolithoautotrophic hosts for the production of fuels and chemicals. Metab. Eng. 30 (2015), 105–120.
28. Paukert, J.L., Rabinowitz, J.C., Formyl-methenyl-methylenetetrahydrofolate synthetase (combined): a multifunctional protein in eukaryotic folate metabolism. Methods Enzymol. 66 (1980), 616–626.
29. Poehlein, A., et al. An ancient pathway combining carbon dioxide fixation with the generation and utilization of a sodium ion gradient for ATP synthesis. PLoS One, 7, 2012, e33439.
30. Rabaey, K., Rozendal, R.A., Microbial electrosynthesis - revisiting the electrical route for microbial production. Nat. Rev. Microbiol. 8 (2010), 706–716.
31. Rabinovitch-Deere, C.A., Oliver, J.W., Rodriguez, G.M., Atsumi, S., Synthetic biology and metabolic engineering approaches to produce biofuels. Chem. Rev. 113 (2013), 4611–4632.
32. Raines, C.A., Increasing photosynthetic carbon assimilation in C3 plants to improve crop yield: current and future strategies. Plant Physiol. 155 (2011), 36–42.
33. Raven, J.A., Contributions of anoxygenic and oxygenic phototrophy and chemolithotrophy to carbon and oxygen fluxes in aquatic environments. Aquat. Microb. Ecol. 56 (2009), 177–192.
34. Riplinger, C., Sampson, M.D., Ritzmann, A.M., Kubiak, C.P., Carter, E.A., Mechanistic contrasts between manganese and rhenium bipyridine electrocatalysts for the reduction of carbon dioxide. J. Am. Chem. Soc. 136 (2014), 16285–16298.
35. Ross, D.E., Flynn, J.M., Baron, D.B., Gralnick, J.A., Bond, D.R., Towards electrosynthesis in shewanella: energetics of reversing the mtr pathway for reductive metabolism. PLoS One, 6, 2011, e16649.
36. Schirch, V., Hopkins, S., Villar, E., Angelaccio, S., Serine hydroxymethyltransferase from Escherichia coli: purification and properties. J. Bacteriol. 163 (1985), 1–7.
37. Schuchmann, K., Muller, V., Autotrophy at the thermodynamic limit of life: a model for energy conservation in acetogenic bacteria. Nat. Rev. Microbiol. 12 (2014), 809–821.
38. Schwander, T., Schada von Borzyskowski, L., Burgener, S., Cortina, N.S., Erb, T.J., A synthetic pathway for the fixation of carbon dioxide in vitro. Science 354 (2016), 900–904.
39. Siegel, J.B., et al. Computational protein design enables a novel one-carbon assimilation pathway. Proc. Natl. Acad. Sci. USA 112 (2015), 3704–3709.
40. 2 to formate in water: including thermochemical insights. Acs Catal. 5 (2015), 7140–7151.
41. 2-sequestering enzyme, Rubisco. Plant Physiol. 155 (2011), 27–35.
42. Wijffels, R.H., Barbosa, M.J., An outlook on microalgal biofuels. Science 329 (2010), 796–799.
43. Yishai, O., Goldbach, L., Tenenboim, H., Lindner, S.N., Bar-Even, A., Engineered assimilation of exogenous and endogenous formate in Escherichia coli. ACS Synth. Biol. 6 (2017), 1722–1731.
44. 2 fixation through chemical production. FEMS Microbiol. Lett., 364, 2017 (fnx165).