-
1
-
-
72849144434
-
Sequencing technologies-the next generation
-
Metzker ML. Sequencing technologies-the next generation. Nat Rev Genet 2010;11:31-46
-
(2010)
Nat Rev Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
2
-
-
78650868150
-
A window into thirdgeneration sequencing
-
Schadt EE, Turner S, Kasarskis A. A window into thirdgeneration sequencing. Hum Mol Genet 2010;19(R2):R227-40
-
(2010)
Hum Mol Genet
, vol.19
, Issue.R2
, pp. R227-R240
-
-
Schadt, E.E.1
Turner, S.2
Kasarskis, A.3
-
3
-
-
84968903135
-
Coming of age: ten years of next-generation sequencing technologies
-
Goodwin S, McPherson JD, McCombie WR. Coming of age: ten years of next-generation sequencing technologies. Nat Rev Genet 2016;17(6):333-51
-
(2016)
Nat Rev Genet
, vol.17
, Issue.6
, pp. 333-351
-
-
Goodwin, S.1
McPherson, J.D.2
McCombie, W.R.3
-
4
-
-
78650094076
-
1000 Genomes Project Consortium, et al A map of human genome variation from populationscale sequencing
-
Abecasis GR Altshuler D. 1000 Genomes Project Consortium, et al A map of human genome variation from populationscale sequencing. Nature 467(7319):1061-73
-
Nature
, vol.467
, Issue.7319
, pp. 1061-1073
-
-
Abecasis G.R Altshuler, D.1
-
5
-
-
77649121204
-
Personal genome sequencing: current approaches and challenges
-
Snyder M, Du J, Gerstein M. Personal genome sequencing: current approaches and challenges. Genes Dev 2010;24(5):423-31
-
(2010)
Genes Dev
, vol.24
, Issue.5
, pp. 423-431
-
-
Snyder, M.1
Du, J.2
Gerstein, M.3
-
6
-
-
84884679328
-
From dissecting cadavers to dissecting genomes
-
Topol EJ. From dissecting cadavers to dissecting genomes. Sci Transl Med 2013;5(202):202ed15
-
(2013)
Sci Transl Med
, vol.5
, Issue.202
-
-
Topol, E.J.1
-
7
-
-
79952395270
-
Cancer genomics: from discovery science to personalized medicine
-
Chin L, Andersen JN, Futreal PA. Cancer genomics: from discovery science to personalized medicine. Nat Med 2011;17(3):297-303
-
(2011)
Nat Med
, vol.17
, Issue.3
, pp. 297-303
-
-
Chin, L.1
Andersen, J.N.2
Futreal, P.A.3
-
8
-
-
58149234737
-
Real-time DNA sequencing from single polymerase molecules
-
Eid J, Fehr A, Gray J, et al. Real-time DNA sequencing from single polymerase molecules. Science 2009;323(5910):133-8
-
(2009)
Science
, vol.323
, Issue.5910
, pp. 133-138
-
-
Eid, J.1
Fehr, A.2
Gray, J.3
-
9
-
-
64449088698
-
Continuous base identification for single-molecule nanopore DNA sequencing
-
Clarke J, Wu HC, Jayasinghe L, et al. Continuous base identification for single-molecule nanopore DNA sequencing. Nat Nanotechnol 2009;4(4):265-70
-
(2009)
Nat Nanotechnol
, vol.4
, Issue.4
, pp. 265-270
-
-
Clarke, J.1
Wu, H.C.2
Jayasinghe, L.3
-
10
-
-
0030465241
-
Characterization of individual polynucleotide molecules using a membrane channel
-
Kasianowicz JJ, Brandin E, Branton D, et al. Characterization of individual polynucleotide molecules using a membrane channel. Proc Natl Acad Sci U S A 1996;93(24):13770-3
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, Issue.24
, pp. 13770-13773
-
-
Kasianowicz, J.J.1
Brandin, E.2
Branton, D.3
-
11
-
-
0032762996
-
Microsecond timescale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules
-
Akeson M, Branton D, Kasianowicz JJ, et al. Microsecond timescale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules. Biophys J 1999;77(6):3227-33
-
(1999)
Biophys J
, vol.77
, Issue.6
, pp. 3227-3233
-
-
Akeson, M.1
Branton, D.2
Kasianowicz, J.J.3
-
13
-
-
80053530116
-
Nucleotide discrimination with DNA immobilized in the MspA nanopore
-
Manrao EA, Derrington IM, Pavlenok M, et al. Nucleotide discrimination with DNA immobilized in the MspA nanopore. PLoS One 6(10):e25723
-
PLoS One
, vol.6
, Issue.10
-
-
Manrao, E.A.1
Derrington, I.M.2
Pavlenok, M.3
-
14
-
-
84859643160
-
Oxford Nanopore announcement sets sequencing sector abuzz
-
Eisenstein M. Oxford Nanopore announcement sets sequencing sector abuzz. Nat Biotechnol 2012;30(4):295-6
-
(2012)
Nat Biotechnol
, vol.30
, Issue.4
, pp. 295-296
-
-
Eisenstein, M.1
-
15
-
-
84970952281
-
MinION Analysis and Reference Consortium: *Phase 1 data release and analysis
-
Ip CLC, Loose M, Tyson JR, et al. MinION Analysis and Reference Consortium: *Phase 1 data release and analysis. F1000Res 2015;4:1075
-
(2015)
F1000Res
, vol.4
, pp. 1075
-
-
Ip, C.L.C.1
Loose, M.2
Tyson, J.R.3
-
16
-
-
84924426384
-
Poretools: a toolkit for analyzing nanopore sequence data
-
Loman NJ, Quinlan AR. Poretools: a toolkit for analyzing nanopore sequence data. Bioinformatics 2014;30(23):3399-401
-
(2014)
Bioinformatics
, vol.30
, Issue.23
, pp. 3399-3401
-
-
Loman, N.J.1
Quinlan, A.R.2
-
17
-
-
84926472171
-
Improved data analysis for the MinION nanopore sequencer
-
Jain M, Fiddes IT, Miga KH, et al. Improved data analysis for the MinION nanopore sequencer. Nat Methods 2015;12(4): 351-6
-
(2015)
Nat Methods
, vol.12
, Issue.4
, pp. 351-356
-
-
Jain, M.1
Fiddes, I.T.2
Miga, K.H.3
-
18
-
-
84866266717
-
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
-
Chaisson MJ, Tesler G. Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory. BMC Bioinformatics 2012;13:238
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 238
-
-
Chaisson, M.J.1
Tesler, G.2
-
19
-
-
68549104404
-
The Sequence Alignment/ Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, et al. The Sequence Alignment/ Map format and SAMtools. Bioinformatics 2009;25(16):2078-9
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
-
20
-
-
79952256999
-
Adaptive seeds tame genomic sequence comparison
-
Kielbasa SM, Wan R, Sato K, et al. Adaptive seeds tame genomic sequence comparison. Genome Res 2011;21(3):487-93
-
(2011)
Genome Res
, vol.21
, Issue.3
, pp. 487-493
-
-
Kielbasa, S.M.1
Wan, R.2
Sato, K.3
-
21
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25(17):3389-402
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
-
22
-
-
84866461485
-
Accurate estimation of short read mapping quality for next-generation genome sequencing
-
Ruffalo M, Koyutürk M, Ray S, et al. Accurate estimation of short read mapping quality for next-generation genome sequencing. Bioinformatics 2012;28(18):i349-55
-
(2012)
Bioinformatics
, vol.28
, Issue.18
, pp. i349-i355
-
-
Ruffalo, M.1
Koyutürk, M.2
Ray, S.3
-
23
-
-
84959087968
-
Denoising DNA deep sequencing data-high-throughput sequencing errors and their correction
-
Laehnemann D, Borkhardt A, McHardy AC. Denoising DNA deep sequencing data-high-throughput sequencing errors and their correction. Brief Bioinformatics 2016;17:154-79
-
(2016)
Brief Bioinformatics
, vol.17
, pp. 154-179
-
-
Laehnemann, D.1
Borkhardt, A.2
McHardy, A.C.3
-
24
-
-
84865591846
-
A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers
-
Quail MA, Smith M, Coupland P, et al. A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics 2012;13:341
-
(2012)
BMC Genomics
, vol.13
, pp. 341
-
-
Quail, M.A.1
Smith, M.2
Coupland, P.3
-
25
-
-
84857170661
-
Read count approach for DNA copy number variants detection
-
Magi A, Tattini L, Pippucci T, et al. Read count approach for DNA copy number variants detection. Bioinformatics 2012;28(4):470-8
-
(2012)
Bioinformatics
, vol.28
, Issue.4
, pp. 470-478
-
-
Magi, A.1
Tattini, L.2
Pippucci, T.3
-
26
-
-
84886541754
-
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
-
Magi A, Tattini L, Cifola I, et al. EXCAVATOR: detecting copy number variants from whole-exome sequencing data. Genome Biol 2013;14(10):R120
-
(2013)
Genome Biol
, vol.14
, Issue.10
, pp. R120
-
-
Magi, A.1
Tattini, L.2
Cifola, I.3
-
27
-
-
84855989774
-
Fast computation and applications of genome mappability
-
Derrien T, Estellé J, Marco Sola S, et al. Fast computation and applications of genome mappability. PLoS One 2012;7:e30377
-
(2012)
PLoS One
, vol.7
-
-
Derrien, T.1
Estellé, J.2
Marco Sola, S.3
-
28
-
-
84938421951
-
A complete bacterial genome assembled de novo using only nanopore sequencing data
-
Loman NJ, Quick J, Simpson JT. A complete bacterial genome assembled de novo using only nanopore sequencing data. Nat Methods 2015;12(8):733-5
-
(2015)
Nat Methods
, vol.12
, Issue.8
, pp. 733-735
-
-
Loman, N.J.1
Quick, J.2
Simpson, J.T.3
-
29
-
-
84942520038
-
A reference bacterial genome dataset generated on the MinIONTM portable single-molecule nanopore sequencer
-
Quick J, Quinlan AR, Loman NJ. A reference bacterial genome dataset generated on the MinIONTM portable single-molecule nanopore sequencer. Gigascience 2014;3:22
-
(2014)
Gigascience
, vol.3
, pp. 22
-
-
Quick, J.1
Quinlan, A.R.2
Loman, N.J.3
-
30
-
-
84924388692
-
MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
-
Ashton PM, Nair S, Dallman T, et al. MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island. Nat Biotechnol 2015;33(3):296-300
-
(2015)
Nat Biotechnol
, vol.33
, Issue.3
, pp. 296-300
-
-
Ashton, P.M.1
Nair, S.2
Dallman, T.3
-
31
-
-
84946557268
-
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
-
Goodwin S, Gurtowski J, Ethe-Sayers S, et al. Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Genome Res 2015;25(11):1750-6
-
(2015)
Genome Res
, vol.25
, Issue.11
, pp. 1750-1756
-
-
Goodwin, S.1
Gurtowski, J.2
Ethe-Sayers, S.3
-
32
-
-
84922368174
-
poRe: an R package for the visualization and analysis of nanopore sequencing data
-
Watson M, Thomson M, Risse J, et al. poRe: an R package for the visualization and analysis of nanopore sequencing data. Bioinformatics 2015;31:114-5
-
(2015)
Bioinformatics
, vol.31
, pp. 114-115
-
-
Watson, M.1
Thomson, M.2
Risse, J.3
-
33
-
-
84959879117
-
NanoOK: multireference alignment analysis of nanopore sequencing data, quality and error profiles
-
Leggett RM, Heavens D, Caccamo M, et al. NanoOK: multireference alignment analysis of nanopore sequencing data, quality and error profiles. Bioinformatics 2016;32:142-4
-
(2016)
Bioinformatics
, vol.32
, pp. 142-144
-
-
Leggett, R.M.1
Heavens, D.2
Caccamo, M.3
-
34
-
-
84943637090
-
De novo sequencing and variant calling with nanopores using PoreSeq
-
Szalay T, Golovchenko JA. De novo sequencing and variant calling with nanopores using PoreSeq. Nat Biotechnol 2015;33(10):1087-91
-
(2015)
Nat Biotechnol
, vol.33
, Issue.10
, pp. 1087-1091
-
-
Szalay, T.1
Golovchenko, J.A.2
-
35
-
-
84964528782
-
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
-
Sović I, Šikić M, Wilm A, et al. Fast and sensitive mapping of nanopore sequencing reads with GraphMap. Nat Commun 2016;7:11307
-
(2016)
Nat Commun
, vol.7
, pp. 11307
-
-
Sović, I.1
Šikić, M.2
Wilm, A.3
-
36
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz S, Phillippy A, Delcher AL, et al. Versatile and open software for comparing large genomes. Genome Biol 2004;5(2):R12
-
(2004)
Genome Biol
, vol.5
, Issue.2
, pp. R12
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
|