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Volumn 107, Issue 37, 2010, Pages 16060-16065

Nanopore DNA sequencing with MspA

Author keywords

Bionanotechnology; Next generation sequencing; Protein pore; Single molecule; Stochastic sensing

Indexed keywords

BACTERIAL PROTEIN; DNA; DOUBLE STRANDED DNA; MYCOBACTERIUM SMEGMATIS PORIN A; SINGLE STRANDED DNA; UNCLASSIFIED DRUG; MSPA PROTEIN, MYCOBACTERIUM SMEGMATIS; NANOMATERIAL; PORIN;

EID: 77958014348     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1001831107     Document Type: Article
Times cited : (469)

References (29)
  • 1
    • 65949107547 scopus 로고    scopus 로고
    • Common Genetic Variation and Human Traits
    • Goldstein DB (2009) Common Genetic Variation and Human Traits. N Engl J Med 360(17):1696-1698.
    • (2009) N Engl J Med , vol.360 , Issue.17 , pp. 1696-1698
    • Goldstein, D.B.1
  • 2
    • 65949124249 scopus 로고    scopus 로고
    • Genomewide association studies - Illuminating biologic pathways
    • Hirschhorn JN (2009) Genomewide association studies - Illuminating biologic pathways. N Engl J Med 360(17):1699-1701.
    • (2009) N Engl J Med , vol.360 , Issue.17 , pp. 1699-1701
    • Hirschhorn, J.N.1
  • 3
    • 72449163470 scopus 로고    scopus 로고
    • The SUMO modification pathway is involved in the BRCA1 response to genotoxic stress
    • Morris JR, et al. (2009) The SUMO modification pathway is involved in the BRCA1 response to genotoxic stress. Nature 462(7275):886-890.
    • (2009) Nature , vol.462 , Issue.7275 , pp. 886-890
    • Morris, J.R.1
  • 4
    • 39049143890 scopus 로고    scopus 로고
    • Overview of DNA sequencing strategies
    • eds Frederick M Ausubel et al. (Wiley Interscience, New York), Chapter 7
    • Shendure JA, Porreca GJ, Church GM (2008) Overview of DNA sequencing strategies. Current Protocols in Molecular Biology, eds Frederick M Ausubel et al. (Wiley Interscience, New York), Chapter 7.
    • (2008) Current Protocols in Molecular Biology
    • Shendure, J.A.1    Porreca, G.J.2    Church, G.M.3
  • 5
    • 70449371390 scopus 로고    scopus 로고
    • The challenges of sequencing by synthesis
    • Fuller CW, et al. (2009) The challenges of sequencing by synthesis. Nat Biotechnol 27(11):1013-1023.
    • (2009) Nat Biotechnol , vol.27 , Issue.11 , pp. 1013-1023
    • Fuller, C.W.1
  • 6
    • 74949138753 scopus 로고    scopus 로고
    • Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays
    • Drmanac R, et al. (2009) Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays. Science 327(5961):78-81.
    • (2009) Science , vol.327 , Issue.5961 , pp. 78-81
    • Drmanac, R.1
  • 7
    • 33750953227 scopus 로고    scopus 로고
    • Whole-genome re-sequencing
    • Bentley DR (2006) Whole-genome re-sequencing. Curr Opin Genet Dev 16(6):545-552.
    • (2006) Curr Opin Genet Dev , vol.16 , Issue.6 , pp. 545-552
    • Bentley, D.R.1
  • 8
    • 53649108801 scopus 로고    scopus 로고
    • The potential and challenges of nanopore sequencing
    • Branton D, et al. (2008) The potential and challenges of nanopore sequencing. Nat Biotechnol 26(10):1146-1153.
    • (2008) Nat Biotechnol , vol.26 , Issue.10 , pp. 1146-1153
    • Branton, D.1
  • 9
    • 72449183574 scopus 로고    scopus 로고
    • Multichannel simultaneous measurements of single-molecule translocation in alpha-hemolysin nanopore array
    • Osaki T, Suzuki H, Le Pioufle B, Takeuchi S (2009) Multichannel simultaneous measurements of single-molecule translocation in alpha-hemolysin nanopore array. Anal Chem 105-114.
    • (2009) Anal Chem , pp. 105-114
    • Osaki, T.1    Suzuki, H.2    Le Pioufle, B.3    Takeuchi, S.4
  • 10
    • 0030465241 scopus 로고    scopus 로고
    • Characterization of individual polynucleotide molecules using a membrane channel
    • Kasianowicz JJ, Brandin E, Branton D, Deamer DW (1996) Characterization of individual polynucleotide molecules using a membrane channel. Proc Natl Acad Sci USA 93(24):13770-13773.
    • (1996) Proc Natl Acad Sci USA , vol.93 , Issue.24 , pp. 13770-13773
    • Kasianowicz, J.J.1    Brandin, E.2    Branton, D.3    Deamer, D.W.4
  • 11
    • 0141955818 scopus 로고    scopus 로고
    • DNA molecules and configurations in a solid-state nanopore microscope
    • Li J, Gershow M, Stein D, Brandin E, Golovchenko JA (2003) DNA molecules and configurations in a solid-state nanopore microscope. Nat Mater 2(9):611-615.
    • (2003) Nat Mater , vol.2 , Issue.9 , pp. 611-615
    • Li, J.1    Gershow, M.2    Stein, D.3    Brandin, E.4    Golovchenko, J.A.5
  • 12
    • 77349126555 scopus 로고    scopus 로고
    • Controlling nanopore size, shape and stability
    • 115304
    • van den Hout M, et al. (2010) Controlling nanopore size, shape and stability. Nanotechnology 21(115304):115304.
    • (2010) Nanotechnology , vol.21 , pp. 115304
    • Van Den Hout, M.1
  • 13
    • 66049132042 scopus 로고    scopus 로고
    • Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore
    • Stoddart D, Heron AJ, Mikhailova E, Maglia G, Bayley H (2009) Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore. Proc Natl Acad Sci USA 106(19):7702-7707.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.19 , pp. 7702-7707
    • Stoddart, D.1    Heron, A.J.2    Mikhailova, E.3    Maglia, G.4    Bayley, H.5
  • 14
    • 70349527955 scopus 로고    scopus 로고
    • Discrimination of single base substitutions in a DNA strand immobilized in a biological nanopore
    • Purnell RF, Schmidt JJ (2009) Discrimination of single base substitutions in a DNA strand immobilized in a biological nanopore. ACS Nano 3(9):2533-2538.
    • (2009) ACS Nano , vol.3 , Issue.9 , pp. 2533-2538
    • Purnell, R.F.1    Schmidt, J.J.2
  • 16
    • 1242352009 scopus 로고    scopus 로고
    • The structure of a mycobacterial outermembrane channel
    • Faller M, Niederweis M, Schulz GE (2004) The structure of a mycobacterial outermembrane channel. Science 303(5661):1189-1192.
    • (2004) Science , vol.303 , Issue.5661 , pp. 1189-1192
    • Faller, M.1    Niederweis, M.2    Schulz, G.E.3
  • 17
    • 0032762996 scopus 로고    scopus 로고
    • Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules
    • Akeson M, Branton D, Kasianowicz JJ, Brandin E, Deamer DW (1999) Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules. Biophys J 77(6): 3227-3233.
    • (1999) Biophys J , vol.77 , Issue.6 , pp. 3227-3233
    • Akeson, M.1    Branton, D.2    Kasianowicz, J.J.3    Brandin, E.4    Deamer, D.W.5
  • 20
    • 0035107270 scopus 로고    scopus 로고
    • Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel
    • DOI 10.1038/85696
    • Vercoutere W, et al. (2001) Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel. Nat Biotechnol 19(3): 248-252. (Pubitemid 32220566)
    • (2001) Nature Biotechnology , vol.19 , Issue.3 , pp. 248-252
    • Vercoutere, W.1    Winters-Hilt, S.2    Olsen, H.3    Deamer, D.4    Haussler, D.5    Akeson, M.6
  • 21
    • 14844290867 scopus 로고    scopus 로고
    • Recognizing a single base in an individual DNA strand: A step toward DNA sequencing in nanopores
    • DOI 10.1002/anie.200462114
    • Ashkenasy N, Sanchez-Quesada J, Bayley H, Ghadiri MR (2005) Recognizing a single base in an individual DNA strand: A step toward DNA sequencing in nanopores. Angew Chem Int Edit 44(9):1401-1404. (Pubitemid 40343561)
    • (2005) Angewandte Chemie - International Edition , vol.44 , Issue.9 , pp. 1401-1404
    • Ashkenasy, N.1    Sanchez-Quesada, J.2    Bayley, H.3    Ghadiri, M.R.4
  • 22
    • 54549099396 scopus 로고    scopus 로고
    • Nucleotide identification and orientation discrimination of DNA homopolymers immobilized in a protein nanopore
    • Purnell RF, Mehta KK, Schmidt JJ (2008) Nucleotide identification and orientation discrimination of DNA homopolymers immobilized in a protein nanopore. Nano Lett 8(9):3029-3034.
    • (2008) Nano Lett , vol.8 , Issue.9 , pp. 3029-3034
    • Purnell, R.F.1    Mehta, K.K.2    Schmidt, J.J.3
  • 23
    • 34748848983 scopus 로고    scopus 로고
    • Rapid DNA sequencing by direct nanoscale reading of nucleotide bases on individual DNA chains
    • ed K Mitchelson (Elsevier, Oxford, UK)
    • Lee J, Meller A (2007) Rapid DNA sequencing by direct nanoscale reading of nucleotide bases on individual DNA chains. New High Throughput Technologies for DNA Sequencing and Genomics, ed K Mitchelson (Elsevier, Oxford, UK), pp 245-264.
    • (2007) New High Throughput Technologies for DNA Sequencing and Genomics , pp. 245-264
    • Lee, J.1    Meller, A.2
  • 24
    • 35648963025 scopus 로고    scopus 로고
    • Progress toward ultrafast DNA sequencing using solid-state nanopores
    • Soni GV, Meller A (2007) Progress toward ultrafast DNA sequencing using solid-state nanopores. Clin Chem 53(11):1996-2001.
    • (2007) Clin Chem , vol.53 , Issue.11 , pp. 1996-2001
    • Soni, G.V.1    Meller, A.2
  • 25
    • 77953303738 scopus 로고    scopus 로고
    • Optical recognition of converted DNA nucleotides for single-molecule DNA sequencing using nanopore arrays
    • Epub ahead of print
    • McNally B, Yu Z, Sun Y,Weng Z, Meller A (2010) Optical recognition of converted DNA nucleotides for single-molecule DNA sequencing using nanopore arrays. Nano Lett Epub ahead of print.
    • (2010) Nano Lett
    • McNally, B.1    Yu, Z.2    Sun, Y.3    Weng, Z.4    Meller, A.5
  • 26
    • 35648990871 scopus 로고    scopus 로고
    • Sequencing method using magnifying tags
    • Int Patent WO 2000/39333
    • Lexow P (2004) Sequencing method using magnifying tags. Int Patent WO 2000/39333.
    • (2004)
    • Lexow, P.1
  • 27
    • 77957999773 scopus 로고    scopus 로고
    • Method for producing and amplified polynucleotide sequence
    • Int Patent WO 2006/092582
    • Lexow P (2006) Method for producing and amplified polynucleotide sequence. Int Patent WO 2006/092582.
    • (2006)
    • Lexow, P.1
  • 28
    • 38549120295 scopus 로고    scopus 로고
    • Duration learning for analysis of nanopore ionic current blockades
    • Churbanov A, Baribault C, Winters-Hilt S (2007) Duration learning for analysis of nanopore ionic current blockades. BMC Bioinformatics 8(Suppl 7):S14.
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 7
    • Churbanov, A.1    Baribault, C.2    Winters-Hilt, S.3
  • 29
    • 34347232697 scopus 로고    scopus 로고
    • Detecting translocation of individual single stranded DNA homopolymers through a fabricated nanopore chip
    • Kim YR, Li CM, Wang Q, Chen P (2007) Detecting translocation of individual single stranded DNA homopolymers through a fabricated nanopore chip. Front Biosci 12:2978-2983.
    • (2007) Front Biosci , vol.12 , pp. 2978-2983
    • Kim, Y.R.1    Li, C.M.2    Wang, Q.3    Chen, P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.