메뉴 건너뛰기




Volumn 3, Issue 1, 2017, Pages 8-16

Correction: Enterotypes in the landscape of gut microbial community composition (Nature Microbiology (2017) DOI: 10.1038/s41564-017-0072-8);Enterotypes in the landscape of gut microbial community composition

(29)  Costea, Paul I a   Hildebrand, Falk a,b,c   Manimozhiyan, Arumugam d   Bäckhed, Fredrik d,e   Blaser, Martin J f   Bushman, Frederic D g   De Vos, Willem M h,i   Ehrlich, S Dusko j,k   Fraser, Claire M l   Hattori, Masahira m   Huttenhower, Curtis n   Jeffery, Ian B o   Knights, Dan p,q   Lewis, James D g   Ley, Ruth E r   Ochman, Howard s   O'Toole, Paul W o   Quince, Christopher t   Relman, David A u,v,w   Shanahan, Fergus o   more..


Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL STRUCTURES; BACTERIUM IDENTIFICATION; CLASSIFICATION ALGORITHM; COMMUNITY ECOLOGY; ENTEROTYPE; FECES MICROFLORA; INTESTINE; INTESTINE FLORA; MICROBIAL COMMUNITY; NONHUMAN; PRIORITY JOURNAL; SOCIAL STRATIFICATION; SPECIES COMPOSITION; TAXONOMIC RANK; ANIMAL; BACTERIUM; BIODIVERSITY; CLASSIFICATION; GASTROINTESTINAL TRACT; GENETICS; HUMAN; METAGENOME; METAGENOMICS; MICROBIOLOGY;

EID: 85038558113     PISSN: None     EISSN: 20585276     Source Type: Journal    
DOI: 10.1038/s41564-018-0114-x     Document Type: Erratum
Times cited : (698)

References (93)
  • 1
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • Huttenhower, C. et al. Structure, function and diversity of the healthy human microbiome. Nature 486, 207-214 (2012).
    • (2012) Nature , vol.486 , pp. 207-214
    • Huttenhower, C.1
  • 2
    • 84988864262 scopus 로고    scopus 로고
    • Revised estimates for the number of human and bacteria cells in the body
    • Sender, R., Fuchs, S. & Milo, R. Revised estimates for the number of human and bacteria cells in the body. PLoS Biol. 14, e1002533 (2016).
    • (2016) PLoS Biol. , vol.14 , pp. e1002533
    • Sender, R.1    Fuchs, S.2    Milo, R.3
  • 3
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • Qin, J. et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464, 59-65 (2010).
    • (2010) Nature , vol.464 , pp. 59-65
    • Qin, J.1
  • 4
    • 58749112734 scopus 로고    scopus 로고
    • A core gut microbiome in obese and lean twins
    • Turnbaugh, P. J. et al. A core gut microbiome in obese and lean twins. Nature 457, 480-484 (2009).
    • (2009) Nature , vol.457 , pp. 480-484
    • Turnbaugh, P.J.1
  • 5
    • 84879744885 scopus 로고    scopus 로고
    • The long-term stability of the human gut microbiota
    • Faith, J. J. et al. The long-term stability of the human gut microbiota. Science 341, 1237439 (2013).
    • (2013) Science , vol.341 , pp. 1237439
    • Faith, J.J.1
  • 6
    • 84883110880 scopus 로고    scopus 로고
    • Richness of human gut microbiome correlates with metabolic markers
    • Le Chatelier, E. et al. Richness of human gut microbiome correlates with metabolic markers. Nature 500, 541-546 (2013).
    • (2013) Nature , vol.500 , pp. 541-546
    • Le-Chatelier, E.1
  • 7
    • 84968918909 scopus 로고    scopus 로고
    • Population-level analysis of gut microbiome variation
    • Falony, G. et al. Population-level analysis of gut microbiome variation. Science 352, 560-564 (2016).
    • (2016) Science , vol.352 , pp. 560-564
    • Falony, G.1
  • 8
    • 84862141704 scopus 로고    scopus 로고
    • Human gut microbiome viewed across age and geography
    • Yatsunenko, T. et al. Human gut microbiome viewed across age and geography. Nature 486, 222-227 (2012).
    • (2012) Nature , vol.486 , pp. 222-227
    • Yatsunenko, T.1
  • 11
    • 0035845511 scopus 로고    scopus 로고
    • Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
    • Sørlie, T. et al. Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc. Natl Acad. Sci. USA 98, 10869-10874 (2001).
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 10869-10874
    • Sørlie, T.1
  • 12
    • 0037478605 scopus 로고    scopus 로고
    • Repeated observation of breast tumor subtypes in independent gene expression data sets
    • Sorlie, T. et al. Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc. Natl Acad. Sci. USA 100, 8418-8423 (2003).
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 8418-8423
    • Sorlie, T.1
  • 13
    • 84860589077 scopus 로고    scopus 로고
    • Assessment of colorectal cancer molecular features along bowel subsites challenges the conception of distinct dichotomy of proximal versus distal colorectum
    • Yamauchi, M. et al. Assessment of colorectal cancer molecular features along bowel subsites challenges the conception of distinct dichotomy of proximal versus distal colorectum. Gut 61, 847-854 (2012).
    • (2012) Gut , vol.61 , pp. 847-854
    • Yamauchi, M.1
  • 14
    • 85027927719 scopus 로고    scopus 로고
    • Enterotypes of the human gut microbiome
    • Arumugam, M. et al. Enterotypes of the human gut microbiome. Nature 473, 174-180 (2011).
    • (2011) Nature , vol.473 , pp. 174-180
    • Arumugam, M.1
  • 15
    • 79952750340 scopus 로고    scopus 로고
    • Vaginal microbiome of reproductive-age women
    • Ravel, J. et al. Vaginal microbiome of reproductive-age women. Proc. Natl Acad. Sci. USA 108, 4680-4687 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 4680-4687
    • Ravel, J.1
  • 16
    • 84873510063 scopus 로고    scopus 로고
    • A guide to enterotypes across the human body: Meta-analysis of microbial community structures in human microbiome datasets
    • Koren, O. et al. A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets. PLoS Comput. Biol. 9, e1002863 (2013).
    • (2013) PLoS Comput. Biol. , vol.9 , pp. e1002863
    • Koren, O.1
  • 17
    • 84900535804 scopus 로고    scopus 로고
    • Dynamics and associations of microbial community types across the human body
    • Ding, T. & Schloss, P. D. Dynamics and associations of microbial community types across the human body. Nature 509, 357-360 (2014).
    • (2014) Nature , vol.509 , pp. 357-360
    • Ding, T.1    Schloss, P.D.2
  • 18
    • 84991554351 scopus 로고    scopus 로고
    • Exploration of bacterial community classes in major human habitats
    • Zhou, Y. et al. Exploration of bacterial community classes in major human habitats. Genome Biol. 15, R66 (2014).
    • (2014) Genome Biol. , vol.15 , pp. R66
    • Zhou, Y.1
  • 19
    • 84867074831 scopus 로고    scopus 로고
    • A metagenome-wide association study of gut microbiota in type 2. Diabetes
    • Qin, J. et al. A metagenome-wide association study of gut microbiota in type 2. diabetes. Nature 490, 55-60 (2012).
    • (2012) Nature , vol.490 , pp. 55-60
    • Qin, J.1
  • 21
    • 84871732071 scopus 로고    scopus 로고
    • Genomic variation landscape of the human gut microbiome
    • Schloissnig, S. et al. Genomic variation landscape of the human gut microbiome. Nature 493, 45-50 (2013).
    • (2013) Nature , vol.493 , pp. 45-50
    • Schloissnig, S.1
  • 22
    • 84939135810 scopus 로고    scopus 로고
    • Inter-individual differences in the gene content of human gut bacterial species
    • Zhu, A., Sunagawa, S., Mende, D. R. & Bork, P. Inter-individual differences in the gene content of human gut bacterial species. Genome Biol. 16, 82 (2015).
    • (2015) Genome Biol. , vol.16 , pp. 82
    • Zhu, A.1    Sunagawa, S.2    Mende, D.R.3    Bork, P.4
  • 23
    • 80053618114 scopus 로고    scopus 로고
    • Linking long-term dietary patterns with gut microbial enterotypes
    • Wu, G. D. et al. Linking long-term dietary patterns with gut microbial enterotypes. Science 334, 105-108 (2011).
    • (2011) Science , vol.334 , pp. 105-108
    • Wu, G.D.1
  • 24
    • 84905454882 scopus 로고    scopus 로고
    • Metagenomic data utilization and analysis (MEDUSA) and construction of a global gut microbial gene catalogue
    • Karlsson, F. H., Nookaew, I. & Nielsen, J. Metagenomic data utilization and analysis (MEDUSA) and construction of a global gut microbial gene catalogue. PLoS Comput. Biol. 10, e1003706 (2014).
    • (2014) PLoS Comput. Biol. , vol.10 , pp. e1003706
    • Karlsson, F.H.1    Nookaew, I.2    Nielsen, J.3
  • 25
    • 84898646785 scopus 로고    scopus 로고
    • Establishment of intestinal microbiota during early life: A longitudinal, explorative study of a large cohort of Danish infants
    • Bergstrom, A. et al. Establishment of intestinal microbiota during early life: a longitudinal, explorative study of a large cohort of Danish infants. Appl. Environ. Microbiol. 80, 2889-2900 (2014).
    • (2014) Appl. Environ. Microbiol. , vol.80 , pp. 2889-2900
    • Bergstrom, A.1
  • 26
    • 84856521514 scopus 로고    scopus 로고
    • Dirichlet multinomial mixtures: Generative models for microbial metagenomics
    • Holmes, I., Harris, K. & Quince, C. Dirichlet multinomial mixtures: generative models for microbial metagenomics. PLoS ONE 7, e30126 (2012).
    • (2012) PLoS ONE , vol.7 , pp. e30126
    • Holmes, I.1    Harris, K.2    Quince, C.3
  • 27
    • 84876889703 scopus 로고    scopus 로고
    • The impact of Crohn's disease genes on healthy human gut microbiota: A pilot study
    • Quince, C. et al. The impact of Crohn's disease genes on healthy human gut microbiota: a pilot study. Gut 62, 952-954 (2013).
    • (2013) Gut , vol.62 , pp. 952-954
    • Quince, C.1
  • 28
    • 84892992144 scopus 로고    scopus 로고
    • Microbial enterotypes, inferred by the Prevotella-to-Bacteroides ratio, remained stable during a 6-month randomized controlled diet intervention with the new nordic diet
    • Roager, H. M., Licht, T. R., Poulsen, S. K., Larsen, T. M. & Bahl, M. I. Microbial enterotypes, inferred by the Prevotella-to-Bacteroides ratio, remained stable during a 6-month randomized controlled diet intervention with the new nordic diet. Appl. Environ. Microbiol. 80, 1142-1149 (2014).
    • (2014) Appl. Environ. Microbiol. , vol.80 , pp. 1142-1149
    • Roager, H.M.1    Licht, T.R.2    Poulsen, S.K.3    Larsen, T.M.4    Bahl, M.I.5
  • 29
    • 84865055757 scopus 로고    scopus 로고
    • Analysis of the gut microbiota in the Old Order Amish and its relation to the metabolic syndrome
    • Zupancic, M. L. et al. Analysis of the gut microbiota in the Old Order Amish and its relation to the metabolic syndrome. PLoS ONE 7, e43052 (2012).
    • (2012) PLoS ONE , vol.7 , pp. e43052
    • Zupancic, M.L.1
  • 30
    • 84864722033 scopus 로고    scopus 로고
    • Gut microbiota composition correlates with diet and health in the elderly
    • Claesson, M. J. et al. Gut microbiota composition correlates with diet and health in the elderly. Nature 488, 178-184 (2012).
    • (2012) Nature , vol.488 , pp. 178-184
    • Claesson, M.J.1
  • 31
    • 84959557262 scopus 로고    scopus 로고
    • On the origins and control of community types in the human microbiome
    • Gibson, T. E., Bashan, A., Cao, H.-T., Weiss, S. T. & Liu, Y.-Y. On the origins and control of community types in the human microbiome. PLoS Comput. Biol. 12, e1004688 (2016).
    • (2016) PLoS Comput. Biol. , vol.12 , pp. e1004688
    • Gibson, T.E.1    Bashan, A.2    Cao, H.-T.3    Weiss, S.T.4    Liu, Y.-Y.5
  • 32
    • 84872687670 scopus 로고    scopus 로고
    • Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice
    • Hildebrand, F. et al. Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice. Genome Biol. 14, R4 (2013).
    • (2013) Genome Biol. , vol.14 , pp. R4
    • Hildebrand, F.1
  • 33
    • 84903722284 scopus 로고    scopus 로고
    • Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice
    • Wang, J. et al. Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice. Proc. Natl Acad. Sci. USA 111, 2703-2710 (2014).
    • (2014) Proc. Natl Acad. Sci. USA , vol.111 , pp. 2703-2710
    • Wang, J.1
  • 34
    • 84870805463 scopus 로고    scopus 로고
    • Chimpanzees and humans harbour compositionally similar gut enterotypes
    • Moeller, A. H. et al. Chimpanzees and humans harbour compositionally similar gut enterotypes. Nat. Commun. 3, 1179 (2012).
    • (2012) Nat. Commun. , vol.3 , pp. 1179
    • Moeller, A.H.1
  • 35
    • 84925300953 scopus 로고    scopus 로고
    • Stability of the gorilla microbiome despite simian immunodeficiency virus infection
    • Moeller, A. H. et al. Stability of the gorilla microbiome despite simian immunodeficiency virus infection. Mol. Ecol. 24, 690-697 (2015).
    • (2015) Mol. Ecol. , vol.24 , pp. 690-697
    • Moeller, A.H.1
  • 36
    • 84945433592 scopus 로고    scopus 로고
    • Early-life establishment of the swine gut microbiome and impact on host phenotypes
    • Mach, N. et al. Early-life establishment of the swine gut microbiome and impact on host phenotypes. Environ. Microbiol. Rep. 7, 554-569 (2015).
    • (2015) Environ. Microbiol. Rep. , vol.7 , pp. 554-569
    • Mach, N.1
  • 37
    • 84968658925 scopus 로고    scopus 로고
    • Phylogenetic network analysis applied to pig gut microbiota identifies an ecosystem structure linked with growth traits
    • Ramayo-Caldas, Y. et al. Phylogenetic network analysis applied to pig gut microbiota identifies an ecosystem structure linked with growth traits. ISME J. 10, 2973-2977 (2016).
    • (2016) ISME J. , vol.10 , pp. 2973-2977
    • Ramayo-Caldas, Y.1
  • 38
    • 84938575125 scopus 로고    scopus 로고
    • Two gut community enterotypes recur in diverse bumblebee species
    • Li, J. et al. Two gut community enterotypes recur in diverse bumblebee species. Curr. Biol. 25, R652-R653 (2015).
    • (2015) Curr. Biol. , vol.25 , pp. R652-R653
    • Li, J.1
  • 39
    • 84919473614 scopus 로고    scopus 로고
    • Rapid changes in the gut microbiome during human evolution
    • Moeller, A. H. et al. Rapid changes in the gut microbiome during human evolution. Proc. Natl Acad. Sci. USA 111, 16431-16435 (2014).
    • (2014) Proc. Natl Acad. Sci. USA , vol.111 , pp. 16431-16435
    • Moeller, A.H.1
  • 40
    • 85026895683 scopus 로고    scopus 로고
    • The evolution of the host microbiome as an ecosystem on a leash
    • Foster, K. R., Schluter, J., Coyte, K. Z. & Rakoff-Nahoum, S. The evolution of the host microbiome as an ecosystem on a leash. Nature 548, 43-51 (2017).
    • (2017) Nature , vol.548 , pp. 43-51
    • Foster, K.R.1    Schluter, J.2    Coyte, K.Z.3    Rakoff-Nahoum, S.4
  • 41
    • 0242629042 scopus 로고    scopus 로고
    • Catastrophic regime shifts in ecosystems: Linking theory to observation
    • Scheffer, M. & Carpenter, S. R. Catastrophic regime shifts in ecosystems: linking theory to observation. Trends Ecol. Evol. 18, 648-656 (2003).
    • (2003) Trends Ecol. Evol. , vol.18 , pp. 648-656
    • Scheffer, M.1    Carpenter, S.R.2
  • 42
    • 84862173705 scopus 로고    scopus 로고
    • A core human microbiome as viewed through 16S rRNA sequence clusters
    • Huse, S. M., Ye, Y., Zhou, Y. & Fodor, A. A. A core human microbiome as viewed through 16S rRNA sequence clusters. PLoS ONE 7, e34242 (2012).
    • (2012) PLoS ONE , vol.7 , pp. e34242
    • Huse, S.M.1    Ye, Y.2    Zhou, Y.3    Fodor, A.A.4
  • 43
    • 84995755353 scopus 로고    scopus 로고
    • Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle
    • Gorvitovskaia, A., Holmes, S. P. & Huse, S. M. Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle. Microbiome 4, 15 (2016).
    • (2016) Microbiome , vol.4 , pp. 15
    • Gorvitovskaia, A.1    Holmes, S.P.2    Huse, S.M.3
  • 44
    • 84991204326 scopus 로고    scopus 로고
    • Species-function relationships shape ecological properties of the human gut microbiome
    • Vieira-Silva, S. et al. Species-function relationships shape ecological properties of the human gut microbiome. Nat. Microbiol. 1, 16088 (2016).
    • (2016) Nat. Microbiol. , vol.1 , pp. 16088
    • Vieira-Silva, S.1
  • 45
    • 28644450403 scopus 로고    scopus 로고
    • Determinants of woody cover in African savannas
    • Sankaran, M. et al. Determinants of woody cover in African savannas. Nature 438, 846-849 (2005).
    • (2005) Nature , vol.438 , pp. 846-849
    • Sankaran, M.1
  • 46
    • 79955920229 scopus 로고    scopus 로고
    • Tree cover in sub-Saharan Africa: Rainfall and fire constrain forest and savanna as alternative stable states
    • Staver, A. C., Archibald, S. & Levin, S. Tree cover in sub-Saharan Africa: rainfall and fire constrain forest and savanna as alternative stable states. Ecology 92, 1063-1072 (2011).
    • (2011) Ecology , vol.92 , pp. 1063-1072
    • Staver, A.C.1    Archibald, S.2    Levin, S.3
  • 47
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa, M. & Goto, S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28, 27-30 (2000).
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 48
    • 84976905626 scopus 로고    scopus 로고
    • EggNOG 4.5: A hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
    • Huerta-Cepas, J. et al. eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. Nucleic Acids Res. 44, 286-293 (2016).
    • (2016) Nucleic Acids Res. , vol.44 , pp. 286-293
    • Huerta-Cepas, J.1
  • 49
    • 84879456755 scopus 로고    scopus 로고
    • Diet, microbiota, and microbial metabolites in colon cancer risk in rural Africans and African Americans
    • Ou, J. et al. Diet, microbiota, and microbial metabolites in colon cancer risk in rural Africans and African Americans. Am. J. Clin. Nutr. 98, 111-120 (2013).
    • (2013) Am. J. Clin. Nutr. , vol.98 , pp. 111-120
    • Ou, J.1
  • 50
    • 84923372539 scopus 로고    scopus 로고
    • Diversity in gut bacterial community of school-age children in Asia
    • Nakayama, J. et al. Diversity in gut bacterial community of school-age children in Asia. Sci. Rep. 5, 8397 (2015).
    • (2015) Sci. Rep. , vol.5 , pp. 8397
    • Nakayama, J.1
  • 51
    • 84873875156 scopus 로고    scopus 로고
    • Gut microbiomes of Malawian twin pairs discordant for Kwashiorkor
    • Smith, M. I. et al. Gut microbiomes of Malawian twin pairs discordant for Kwashiorkor. Science 339, 548-554 (2013).
    • (2013) Science , vol.339 , pp. 548-554
    • Smith, M.I.1
  • 52
    • 77957075815 scopus 로고    scopus 로고
    • Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
    • De Filippo, C. et al. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc. Natl Acad. Sci. USA 107, 14691-14696 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 14691-14696
    • De-Filippo, C.1
  • 53
    • 84892828465 scopus 로고    scopus 로고
    • Diet rapidly and reproducibly alters the human gut microbiome
    • David, L. A. et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature 505, 559-563 (2014).
    • (2014) Nature , vol.505 , pp. 559-563
    • David, L.A.1
  • 54
    • 78149466996 scopus 로고    scopus 로고
    • Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: Insights into their environmental niche
    • Purushe, J. et al. Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche. Microb. Ecol. 60, 721-729 (2010).
    • (2010) Microb. Ecol. , vol.60 , pp. 721-729
    • Purushe, J.1
  • 55
    • 58149200943 scopus 로고    scopus 로고
    • The Carbohydrate-Active EnZymes database (CAZy): An expert resource for glycogenomics
    • Cantarel, B. L. et al. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics. Nucleic Acids Res. 37, D233-D238 (2009).
    • (2009) Nucleic Acids Res. , vol.37 , pp. D233-D238
    • Cantarel, B.L.1
  • 56
    • 85016946769 scopus 로고    scopus 로고
    • Microbial nutrient niches in the gut
    • Pereira, F. C. & Berry, D. Microbial nutrient niches in the gut. Environ. Microbiol. 19, 1366-1378 (2017).
    • (2017) Environ. Microbiol. , vol.19 , pp. 1366-1378
    • Pereira, F.C.1    Berry, D.2
  • 57
    • 84952942226 scopus 로고    scopus 로고
    • Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates
    • Vandeputte, D. et al. Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates. Gut 65, 57-62 (2016).
    • (2016) Gut , vol.65 , pp. 57-62
    • Vandeputte, D.1
  • 58
    • 84983651716 scopus 로고    scopus 로고
    • Colonic transit time is related to bacterial metabolism and mucosal turnover in the gut
    • Roager, H. M. et al. Colonic transit time is related to bacterial metabolism and mucosal turnover in the gut. Nat. Microbiol. 1, 16093 (2016).
    • (2016) Nat. Microbiol. , vol.1 , pp. 16093
    • Roager, H.M.1
  • 59
    • 79957574938 scopus 로고    scopus 로고
    • Moving pictures of the human microbiome
    • Caporaso, J. G. et al. Moving pictures of the human microbiome. Genome Biol. 12, R50 (2011).
    • (2011) Genome Biol. , vol.12 , pp. R50
    • Caporaso, J.G.1
  • 61
    • 84939179628 scopus 로고    scopus 로고
    • Temporal and technical variability of human gut metagenomes
    • Voigt, A. Y. et al. Temporal and technical variability of human gut metagenomes. Genome Biol. 16, 73 (2015).
    • (2015) Genome Biol. , vol.16 , pp. 73
    • Voigt, A.Y.1
  • 62
    • 79952756960 scopus 로고    scopus 로고
    • Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
    • Dethlefsen, L. & Relman, D. A. Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc. Natl Acad. Sci. USA 108, 4554-4561 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 4554-4561
    • Dethlefsen, L.1    Relman, D.A.2
  • 63
    • 84873019302 scopus 로고    scopus 로고
    • Duodenal infusion of donor feces for recurrent Clostridium difficile
    • Van Nood, E. et al. Duodenal infusion of donor feces for recurrent Clostridium difficile. N. Engl. J. Med. 368, 407-415 (2013).
    • (2013) N. Engl. J. Med. , vol.368 , pp. 407-415
    • Van-Nood, E.1
  • 64
    • 84949491459 scopus 로고    scopus 로고
    • Dietary fiber-induced improvement in glucose metabolism is associated with increased abundance of Prevotella
    • Kovatcheva-Datchary, P. et al. Dietary fiber-induced improvement in glucose metabolism is associated with increased abundance of Prevotella. Cell Metab. 22, 971-982 (2015).
    • (2015) Cell Metab. , vol.22 , pp. 971-982
    • Kovatcheva-Datchary, P.1
  • 65
    • 33845901507 scopus 로고    scopus 로고
    • Human gut microbes associated with obesity
    • Ley, R. E., Turnbaugh, P. J., Klein, S. & Gordon, J. I. Human gut microbes associated with obesity. Nature 444, 1022-1023 (2006).
    • (2006) Nature , vol.444 , pp. 1022-1023
    • Ley, R.E.1    Turnbaugh, P.J.2    Klein, S.3    Gordon, J.I.4
  • 66
    • 84880439384 scopus 로고    scopus 로고
    • Predicting and manipulating cardiac drug inactivation by the human gut bacterium Eggerthella lenta
    • Haiser, H. J. et al. Predicting and manipulating cardiac drug inactivation by the human gut bacterium Eggerthella lenta. Science 341, 295-298 (2013).
    • (2013) Science , vol.341 , pp. 295-298
    • Haiser, H.J.1
  • 67
    • 84956873905 scopus 로고    scopus 로고
    • Bidirectional interactions between indomethacin and the murine intestinal microbiota
    • Liang, X. et al. Bidirectional interactions between indomethacin and the murine intestinal microbiota. eLife 4, e08973 (2015).
    • (2015) ELife , vol.4 , pp. e08973
    • Liang, X.1
  • 68
    • 84961226156 scopus 로고    scopus 로고
    • The microbial pharmacists within us: A metagenomic view of xenobiotic metabolism
    • Spanogiannopoulos, P., Bess, E. N., Carmody, R. N. & Turnbaugh, P. J. The microbial pharmacists within us: a metagenomic view of xenobiotic metabolism. Nat. Rev. Microbiol. 14, 273-287 (2016).
    • (2016) Nat. Rev. Microbiol. , vol.14 , pp. 273-287
    • Spanogiannopoulos, P.1    Bess, E.N.2    Carmody, R.N.3    Turnbaugh, P.J.4
  • 69
    • 84949772416 scopus 로고    scopus 로고
    • Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota
    • Forslund, K. et al. Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature 528, 262-266 (2015).
    • (2015) Nature , vol.528 , pp. 262-266
    • Forslund, K.1
  • 70
    • 84873296091 scopus 로고    scopus 로고
    • Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: A connection between endogenous alcohol and NASH
    • Zhu, L. et al. Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: a connection between endogenous alcohol and NASH. Hepatology 57, 601-609 (2013).
    • (2013) Hepatology , vol.57 , pp. 601-609
    • Zhu, L.1
  • 71
    • 84924026956 scopus 로고    scopus 로고
    • Potential of fecal microbiota for early-stage detection of colorectal cancer
    • Zeller, G. et al. Potential of fecal microbiota for early-stage detection of colorectal cancer. Mol. Syst. Biol. 10, 766 (2014).
    • (2014) Mol. Syst. Biol. , vol.10 , pp. 766
    • Zeller, G.1
  • 72
    • 79551571717 scopus 로고    scopus 로고
    • Microbial dysbiosis in colorectal cancer (CRC) patients
    • Sobhani, I. et al. Microbial dysbiosis in colorectal cancer (CRC) patients. PLoS ONE 6, e16393 (2011).
    • (2011) PLoS ONE , vol.6 , pp. e16393
    • Sobhani, I.1
  • 73
    • 77949886724 scopus 로고    scopus 로고
    • Intestinal dysbiosis and reduced immunoglobulin-coated bacteria associated with coeliac disease in children
    • De Palma, G. et al. Intestinal dysbiosis and reduced immunoglobulin-coated bacteria associated with coeliac disease in children. Microbiology 10, 63 (2010).
    • (2010) Microbiology , vol.10 , pp. 63
    • De-Palma, G.1
  • 74
    • 78049522796 scopus 로고    scopus 로고
    • Long-term impacts of antibiotic exposure on the human intestinal microbiota
    • Jernberg, C., Löfmark, S., Edlund, C. & Jansson, J. K. Long-term impacts of antibiotic exposure on the human intestinal microbiota. Microbiology 156, 3216-3223 (2010).
    • (2010) Microbiology , vol.156 , pp. 3216-3223
    • Jernberg, C.1    Löfmark, S.2    Edlund, C.3    Jansson, J.K.4
  • 75
    • 84887323708 scopus 로고    scopus 로고
    • Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis
    • Scher, J. U. et al. Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis. eLife 2, e01202 (2013).
    • (2013) ELife , vol.2 , pp. e01202
    • Scher, J.U.1
  • 76
    • 77949393654 scopus 로고    scopus 로고
    • Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
    • Larsen, N. et al. Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults. PLoS ONE 5, e9085 (2010).
    • (2010) PLoS ONE , vol.5 , pp. e9085
    • Larsen, N.1
  • 77
    • 84883855720 scopus 로고    scopus 로고
    • Alterations in the gut microbiota associated with HIV-1 infection
    • Lozupone, C. A. et al. Alterations in the gut microbiota associated with HIV-1 infection. Cell Host Microbe 14, 329-339 (2013).
    • (2013) Cell Host Microbe , vol.14 , pp. 329-339
    • Lozupone, C.A.1
  • 78
    • 84957063177 scopus 로고    scopus 로고
    • Gut microbiota linked to sexual preference and HIV infection
    • Noguera-Julian, M. et al. Gut microbiota linked to sexual preference and HIV infection. EBioMedicine 5, 135-146 (2016).
    • (2016) EBioMedicine , vol.5 , pp. 135-146
    • Noguera-Julian, M.1
  • 79
    • 84871814687 scopus 로고    scopus 로고
    • Symptomatic atherosclerosis is associated with an altered gut metagenome
    • Karlsson, F. H. et al. Symptomatic atherosclerosis is associated with an altered gut metagenome. Nat. Commun. 3, 1245 (2012).
    • (2012) Nat. Commun. , vol.3 , pp. 1245
    • Karlsson, F.H.1
  • 80
    • 84908067044 scopus 로고    scopus 로고
    • Rethinking 'enterotypes'
    • Knights, D. et al. Rethinking 'enterotypes'. Cell Host Microbe 16, 433-437 (2014).
    • (2014) Cell Host Microbe , vol.16 , pp. 433-437
    • Knights, D.1
  • 81
    • 84904012195 scopus 로고    scopus 로고
    • Microbiome data distinguish patients with Clostridium difficile infection and non-C. Difficile-associated diarrhea from healthy controls
    • Schubert, A. M. et al. Microbiome data distinguish patients with Clostridium difficile infection and non-C. difficile-associated diarrhea from healthy controls. mBio 5, e01021-14 (2014).
    • (2014) MBio , vol.5 , pp. e01021-e01114
    • Schubert, A.M.1
  • 82
    • 84871784819 scopus 로고    scopus 로고
    • Association of all-cause mortality with overweight and obesity using standard body mass index categories: A systematic review and meta-analysis
    • Flegal, K. M., Kit, B. K., Orpana, H. & Graubard, B. I. Association of all-cause mortality with overweight and obesity using standard body mass index categories: a systematic review and meta-analysis. JAMA 309, 71-82 (2013).
    • (2013) JAMA , vol.309 , pp. 71-82
    • Flegal, K.M.1    Kit, B.K.2    Orpana, H.3    Graubard, B.I.4
  • 83
    • 77955067191 scopus 로고    scopus 로고
    • Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
    • Wu, G. D. et al. Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags. Microbiology 10, 206 (2010).
    • (2010) Microbiology , vol.10 , pp. 206
    • Wu, G.D.1
  • 84
    • 85034013111 scopus 로고    scopus 로고
    • Uncovering the horseshoe effect in microbial analyses
    • Morton, J. T. et al. Uncovering the horseshoe effect in microbial analyses. mSystems 2, e00166-16 (2017).
    • (2017) MSystems , vol.2 , pp. e00166-e00216
    • Morton, J.T.1
  • 85
    • 85033585402 scopus 로고    scopus 로고
    • Towards standards for human fecal sample processing in metagenomic studies
    • Costea, P. et al. Towards standards for human fecal sample processing in metagenomic studies. Nat. Biotechnol. 35, 1069-1076 (2017).
    • (2017) Nat. Biotechnol. , vol.35 , pp. 1069-1076
    • Costea, P.1
  • 86
    • 85033445586 scopus 로고    scopus 로고
    • Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium
    • Sinha, R. et al. Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium. Nat. Biotechnol. 35, 1077-1086 (2017).
    • (2017) Nat. Biotechnol. , vol.35 , pp. 1077-1086
    • Sinha, R.1
  • 87
    • 84890204819 scopus 로고    scopus 로고
    • Metagenomic analysis of the dynamic changes in the gut microbiome of the participants of the MARS-500 experiment, simulating long term space flight
    • Mardanov, A. V. et al. Metagenomic analysis of the dynamic changes in the gut microbiome of the participants of the MARS-500 experiment, simulating long term space flight. Acta Naturae 5, 116-125 (2013).
    • (2013) Acta Naturae , vol.5 , pp. 116-125
    • Mardanov, A.V.1
  • 88
    • 84864440400 scopus 로고    scopus 로고
    • Metagenomic microbial community profiling using unique clade-specific marker genes
    • Segata, N. et al. Metagenomic microbial community profiling using unique clade-specific marker genes. Nat. Methods 9, 811-814 (2012).
    • (2012) Nat. Methods , vol.9 , pp. 811-814
    • Segata, N.1
  • 89
    • 84905454882 scopus 로고    scopus 로고
    • Metagenomic data utilization and analysis (MEDUSA) and construction of a global gut microbial gene catalogue
    • Karlsson, F. H., Nookaew, I. & Nielsen, J. Metagenomic data utilization and analysis (MEDUSA) and construction of a global gut microbial gene catalogue. PLoS Comput. Biol. 10, e1003706 (2014).
    • (2014) PLoS Comput. Biol. , vol.10 , pp. e1003706
    • Karlsson, F.H.1    Nookaew, I.2    Nielsen, J.3
  • 90
    • 84864945803 scopus 로고    scopus 로고
    • Rapid identification of high-confidence taxonomic assignments for metagenomic data
    • MacDonald, N. J., Parks, D. H. & Beiko, R. G. Rapid identification of high-confidence taxonomic assignments for metagenomic data. Nucleic Acids Res. 40, e111 (2012).
    • (2012) Nucleic Acids Res. , vol.40 , pp. e111
    • MacDonald, N.J.1    Parks, D.H.2    Beiko, R.G.3
  • 91
    • 84901056709 scopus 로고    scopus 로고
    • Mongolians core gut microbiota and its correlation with seasonal dietary changes
    • Zhang, J. et al. Mongolians core gut microbiota and its correlation with seasonal dietary changes. Sci. Rep. 4, 5001 (2014).
    • (2014) Sci. Rep. , vol.4 , pp. 5001
    • Zhang, J.1
  • 92
    • 79960289551 scopus 로고    scopus 로고
    • Evaluation of intestinal microbiotas of healthy Japanese adults and effect of antibiotics using the 16S ribosomal RNA gene based clone library method
    • Morotomi, N. et al. Evaluation of intestinal microbiotas of healthy japanese adults and effect of antibiotics using the 16S ribosomal RNA gene based clone library method. Biol. Pharm. Bull. 34, 1011-1020 (2011).
    • (2011) Biol. Pharm. Bull. , vol.34 , pp. 1011-1020
    • Morotomi, N.1
  • 93
    • 84876584775 scopus 로고    scopus 로고
    • Impact of oral typhoid vaccination on the human gut microbiota and correlations with S. Typhi-specific immunological responses
    • Eloe-Fadrosh, E. A. et al. Impact of oral typhoid vaccination on the human gut microbiota and correlations with S. typhi-specific immunological responses. PLoS ONE 4, e62026 (2013).
    • (2013) PLoS ONE , vol.4 , pp. e62026
    • Eloe-Fadrosh, E.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.