Chimpanzees and humans harbour compositionally similar gut enterotypes

Nature Communications

Volumn 3, Issue , 2012, Pages

  Moeller, Andrew H ^a   Degnan, Patrick H ^a   Pusey, Anne E ^b   Wilson, Michael L ^c   Hahn, Beatrice H ^d   Ochman, Howard ^a  

^a YALE UNIVERSITY   (United States)

^b DUKE UNIVERSITY   (United States)

^c UNIVERSITY OF MINNESOTA   (United States)

^d UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIUM; COMMUNITY COMPOSITION; COMMUNITY STRUCTURE; DIGESTIVE SYSTEM; DIVERGENCE; PRIMATE;

ACETIVIBRIO; ANAEROTRUNCUS; ANAEROVIBRIO; ARTICLE; BACTERIUM; BACTEROIDES; BIFIDOBACTERIUM; BULLEIDIA; BUTYRIVIBRIO; CHIMPANZEE; COLLINSELLA; CONTROLLED STUDY; CORIOBACTERIACEAE; DIALESTER; FAECALIBACTERIUM; GENUS; HOST; HUMAN; HUMAN VERSUS ANIMAL COMPARISON; INTESTINE FLORA; LACHNOSPIRACEAE; MICROBIAL COMMUNITY; NONHUMAN; OLSENELLA; PARABACTEROIDES; RUMINOCOCCUS; SPECIES DIVERSITY; SUBDOLIGRANULUM; TAXONOMY;

ANIMALS; BACTERIA; GASTROINTESTINAL TRACT; HUMANS; PAN TROGLODYTES; TIME FACTORS;

BACTERIA (MICROORGANISMS); HOMINIDAE; PAN;

EID: 84870805463     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms2159     Document Type: Article

References (20)

1. Arumugam, M. et al. Enterotypes of the human gut microbiome. Nature 473, 174-180 (2011).
2. Wu, G. D. et al. Linking long-term dietary patterns with gut microbial enterotypes. Science 334, 105-108 (2011).
3. Cordain, L. et al Origins and evolution of the Western diet: health implications for the 21st century. Am. J. Clin. Nutr. 2, 341-354 (2005).
4. Ley, R. E. et al. Evolution of mammals and their gut microbes. Science 320, 1647-1651 (2008).
5. Ochman, H. et al. Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biol. 11, e1000546 (2010).
6. Muegge, B. D. et al. Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science 332, 970-974 (2011).
7. Degnan, P. H. et al. Factors responsible for the diversification of the gut microbial communities within chimpanzees from Gombe National Park. Proc. Natl Acad. Sci. USA 109, 13034-13039 (2012).
8. Becquet, C., Patterson, N., Stone, A. C, Przeworski, M. & Reich, D. Genetic structure of chimpanzee populations. PLoS Genet. 4, e66 (2007).
9. Hey, J. The divergence of chimpanzee species and subspecies as revealed in multipopulation isolation-with-migration analyses. Mol. Biol. Evol. 4, 921-933 (2010).
10. Bjork, A., Liu, W., Wertheim, J. O., Hahn, B. H. & Worobey, M. Evolutionary history of chimpanzees inferred from complete mitochondrial genomes. Mol Biol. Evol. 1, 615-623 (2011).
11. Tenesa, A. et al. Recent human effective population size estimated from linkage disequilibrium. Genome Res. 17, 520-526 (2007).
12. Ye, J. et al. Bacteria and bacterial rRNA genes associated with the development of colitis in IL-10 \-/\- mice. Inflamm. Bowel Dis. 8, 1041-1050 (2008).
13. Rehman, A. et al. Transcriptional activity of the dominant gut mucosal microbiota in chronic inflammatory bowel disease patients. J. Med. Microbiol. 9, 1114-1122 (2010).
14. Lyra, A. et al. Diarrhoea-predominant irritable bowel syndrome distinguishable by 16S rRNA gene phylotype quantification. World J. Gastroenterol. 47, 5936-5945 (2009).
15. Wrangham, R. W. Feeding behaviour of chimpanzees in Gombe National Park, Tanzania. in Primate Ecology, 503-538 (Academic Press, 1977).
16. Goodall, J. The Chimpanzees of Gombe: Patterns of Behavior (Belknap Press of Harvard University Press, 1986).
17. Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010).
18. Calinsky, T. & Harabasz, J. A dendrite method for cluster analysis. Commun. Stat. Theory 1, 1-27 (1974).
19. Dolédec, S. & Chessel, D. Rythmes saisonniers et composantes stationnelles en milieu aquatique I: description d'un plan d'observations complet par projection de variables. Acta. Oecol. Oec. Genet. 3, 403-426 (1987).
20. Turnbaugh, P. J. et al. A core gut microbiome in obese and lean twins. Nature 457, 480-484 (2008).