-
1
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
The Human Microbiome Project Consortium
-
The Human Microbiome Project Consortium (2012) Structure, function and diversity of the healthy human microbiome. Nature 486: 207-214.
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
2
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, et al. (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464: 59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
-
3
-
-
84878709716
-
Gut metagenome in European women with normal, impaired and diabetic glucose control
-
Karlsson FH, Tremaroli V, Nookaew I, Bergstrom G, Behre CJ, et al. (2013) Gut metagenome in European women with normal, impaired and diabetic glucose control. Nature 498: 99-103.
-
(2013)
Nature
, vol.498
, pp. 99-103
-
-
Karlsson, F.H.1
Tremaroli, V.2
Nookaew, I.3
Bergstrom, G.4
Behre, C.J.5
-
4
-
-
84867074831
-
A metagenome-wide association study of gut microbiota in type 2 diabetes
-
Qin J, Li Y, Cai Z, Li S, Zhu J, et al. (2012) A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490: 55-60.
-
(2012)
Nature
, vol.490
, pp. 55-60
-
-
Qin, J.1
Li, Y.2
Cai, Z.3
Li, S.4
Zhu, J.5
-
5
-
-
84871814687
-
Symptomatic atherosclerosis is associated with an altered gut metagenome
-
Karlsson FH, Fak F, Nookaew I, Tremaroli V, Fagerberg B, et al. (2012) Symptomatic atherosclerosis is associated with an altered gut metagenome. Nat Commun 3: 1245.
-
(2012)
Nat Commun
, vol.3
, pp. 1245
-
-
Karlsson, F.H.1
Fak, F.2
Nookaew, I.3
Tremaroli, V.4
Fagerberg, B.5
-
6
-
-
84883110880
-
Richness of human gut microbiome correlates with metabolic markers
-
Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, et al. (2013) Richness of human gut microbiome correlates with metabolic markers. Nature 500: 541-546.
-
(2013)
Nature
, vol.500
, pp. 541-546
-
-
Le Chatelier, E.1
Nielsen, T.2
Qin, J.3
Prifti, E.4
Hildebrand, F.5
-
7
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
Li R, Zhu H, Ruan J, Qian W, Fang X, et al. (2010) De novo assembly of human genomes with massively parallel short read sequencing. Genome Res 20: 265-272.
-
(2010)
Genome Res
, vol.20
, pp. 265-272
-
-
Li, R.1
Zhu, H.2
Ruan, J.3
Qian, W.4
Fang, X.5
-
8
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E, (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
9
-
-
84867634981
-
MOCAT: a metagenomics assembly and gene prediction toolkit
-
Kultima JR, Sunagawa S, Li J, Chen W, Chen H, et al. (2012) MOCAT: a metagenomics assembly and gene prediction toolkit. PLoS One 7: e47656.
-
(2012)
PLoS One
, vol.7
-
-
Kultima, J.R.1
Sunagawa, S.2
Li, J.3
Chen, W.4
Chen, H.5
-
10
-
-
79952124952
-
Taxonomic metagenome sequence assignment with structured output models
-
Patil KR, Haider P, Pope PB, Turnbaugh PJ, Morrison M, et al. (2011) Taxonomic metagenome sequence assignment with structured output models. Nat Methods 8: 191-192.
-
(2011)
Nat Methods
, vol.8
, pp. 191-192
-
-
Patil, K.R.1
Haider, P.2
Pope, P.B.3
Turnbaugh, P.J.4
Morrison, M.5
-
11
-
-
79955611184
-
PhymmBL expanded: confidence scores, custom databases, parallelization and more
-
Brady A, Salzberg S, (2011) PhymmBL expanded: confidence scores, custom databases, parallelization and more. Nat Methods 8: 367.
-
(2011)
Nat Methods
, vol.8
, pp. 367
-
-
Brady, A.1
Salzberg, S.2
-
12
-
-
84864440400
-
Metagenomic microbial community profiling using unique clade-specific marker genes
-
Segata N, Waldron L, Ballarini A, Narasimhan V, Jousson O, et al. (2012) Metagenomic microbial community profiling using unique clade-specific marker genes. Nat Methods 9: 811-814.
-
(2012)
Nat Methods
, vol.9
, pp. 811-814
-
-
Segata, N.1
Waldron, L.2
Ballarini, A.3
Narasimhan, V.4
Jousson, O.5
-
13
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, et al. (2009) A core gut microbiome in obese and lean twins. Nature 457: 480-484.
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
Duncan, A.5
-
14
-
-
84883464181
-
Accurate and universal delineation of prokaryotic species
-
Mende DR, Sunagawa S, Zeller G, Bork P, (2013) Accurate and universal delineation of prokaryotic species. Nat Methods 10: 881-884.
-
(2013)
Nat Methods
, vol.10
, pp. 881-884
-
-
Mende, D.R.1
Sunagawa, S.2
Zeller, G.3
Bork, P.4
-
15
-
-
84861694782
-
The adult intestinal core microbiota is determined by analysis depth and health status
-
Salonen A, Salojarvi J, Lahti L, de Vos WM, (2012) The adult intestinal core microbiota is determined by analysis depth and health status. Clin Microbiol Infect 18 (Suppl 4):: 16-20.
-
(2012)
Clin Microbiol Infect
, vol.18
, Issue.SUPPL. 4
, pp. 16-20
-
-
Salonen, A.1
Salojarvi, J.2
Lahti, L.3
de Vos, W.M.4
-
16
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, et al. (2011) Enterotypes of the human gut microbiome. Nature 473: 174-180.
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
-
17
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC, (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
18
-
-
30944466824
-
Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach
-
Manichanh C, Rigottier-Gois L, Bonnaud E, Gloux K, Pelletier E, et al. (2006) Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach. Gut 55: 205-211.
-
(2006)
Gut
, vol.55
, pp. 205-211
-
-
Manichanh, C.1
Rigottier-Gois, L.2
Bonnaud, E.3
Gloux, K.4
Pelletier, E.5
-
19
-
-
84864722033
-
Gut microbiota composition correlates with diet and health in the elderly
-
Claesson MJ, Jeffery IB, Conde S, Power SE, O'Connor EM, et al. (2012) Gut microbiota composition correlates with diet and health in the elderly. Nature 488: 178-184.
-
(2012)
Nature
, vol.488
, pp. 178-184
-
-
Claesson, M.J.1
Jeffery, I.B.2
Conde, S.3
Power, S.E.4
O'Connor, E.M.5
-
20
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, et al. (2012) Human gut microbiome viewed across age and geography. Nature 486: 222-227.
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
-
21
-
-
80053618114
-
Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes
-
Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, et al. (2011) Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes. Science 334: 105-108.
-
(2011)
Science
, vol.334
, pp. 105-108
-
-
Wu, G.D.1
Chen, J.2
Hoffmann, C.3
Bittinger, K.4
Chen, Y.Y.5
-
22
-
-
84879744885
-
The long-term stability of the human gut microbiota
-
Faith JJ, Guruge JL, Charbonneau M, Subramanian S, Seedorf H, et al. (2013) The long-term stability of the human gut microbiota. Science 341: 1237439.
-
(2013)
Science
, vol.341
, pp. 1237439
-
-
Faith, J.J.1
Guruge, J.L.2
Charbonneau, M.3
Subramanian, S.4
Seedorf, H.5
-
23
-
-
84865477413
-
Antibiotics in early life alter the murine colonic microbiome and adiposity
-
Cho I, Yamanishi S, Cox L, Methe BA, Zavadil J, et al. (2012) Antibiotics in early life alter the murine colonic microbiome and adiposity. Nature 488: 621-626.
-
(2012)
Nature
, vol.488
, pp. 621-626
-
-
Cho, I.1
Yamanishi, S.2
Cox, L.3
Methe, B.A.4
Zavadil, J.5
-
24
-
-
56849106496
-
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
-
Dethlefsen L, Huse S, Sogin ML, Relman DA, (2008) The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol 6: e280.
-
(2008)
PLoS Biol
, vol.6
-
-
Dethlefsen, L.1
Huse, S.2
Sogin, M.L.3
Relman, D.A.4
-
25
-
-
84888884475
-
Metagenomic species profiling using universal phylogenetic marker genes
-
Sunagawa S, Mende DR, Zeller G, Izquierdo-Carrasco F, Berger SA, et al. (2013) Metagenomic species profiling using universal phylogenetic marker genes. Nat Methods 10: 1196-1199.
-
(2013)
Nat Methods
, vol.10
, pp. 1196-1199
-
-
Sunagawa, S.1
Mende, D.R.2
Zeller, G.3
Izquierdo-Carrasco, F.4
Berger, S.A.5
-
26
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL, (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods 9: 357-359.
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
27
-
-
84870837088
-
The GEM mapper: fast, accurate and versatile alignment by filtration
-
Marco-Sola S, Sammeth M, Guigo R, Ribeca P, (2012) The GEM mapper: fast, accurate and versatile alignment by filtration. Nat Methods 9: 1185-1188.
-
(2012)
Nat Methods
, vol.9
, pp. 1185-1188
-
-
Marco-Sola, S.1
Sammeth, M.2
Guigo, R.3
Ribeca, P.4
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