메뉴 건너뛰기




Volumn 4, Issue , 2016, Pages

Interpreting prevotella and bacteroides as biomarkers of diet and lifestyle

Author keywords

Biomarkers; Enterotypes; Human gut; Microbiome

Indexed keywords

BIOLOGICAL MARKER; DNA;

EID: 84995755353     PISSN: None     EISSN: 20492618     Source Type: Journal    
DOI: 10.1186/s40168-016-0160-7     Document Type: Article
Times cited : (315)

References (32)
  • 1
    • 85027927719 scopus 로고    scopus 로고
    • Enterotypes of the human gut microbiome
    • Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, et al. Enterotypes of the human gut microbiome. Nature. 2011;473(7346):174-80. http://www.nature.com/nature/journal/v473/n7346/full/nature09944.html.
    • (2011) Nature. , vol.473 , Issue.7346 , pp. 174-180
    • Arumugam, M.1    Raes, J.2    Pelletier, E.3    Le Paslier, D.4    Yamada, T.5    Mende, D.R.6
  • 2
    • 80053618114 scopus 로고    scopus 로고
    • Linking long-term dietary patterns with gut microbial E=enterotypes
    • Wu GD, Chen J, Hoffmann C, Bittinger K, Chen Y-Y, Keilbaugh SA, et al. Linking long-term dietary patterns with gut microbial E=enterotypes. Science. 2011;334(6052):105-8. doi:10.1126/science.1208344.
    • (2011) Science. , vol.334 , Issue.6052 , pp. 105-108
    • Wu, G.D.1    Chen, J.2    Hoffmann, C.3    Bittinger, K.4    Chen, Y-Y.5    Keilbaugh, S.A.6
  • 3
    • 84862173705 scopus 로고    scopus 로고
    • A core human microbiome as viewed through 16S rRNA sequence clusters
    • Huse SM, Ye Y, Zhou Y, Fodor AA. A core human microbiome as viewed through 16S rRNA sequence clusters. PLoS One. 2012;7(6):e34242. doi:10. 1371/journal.pone.0034242.
    • (2012) PLoS One. , vol.7 , Issue.6
    • Huse, S.M.1    Ye, Y.2    Zhou, Y.3    Fodor, A.A.4
  • 4
  • 5
    • 84873510063 scopus 로고    scopus 로고
    • A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets
    • Koren O, Knights D, Gonzalez A, Waldron L, Segata N, Knight R, et al. A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets. PLoS Comput Biol. 2013;9(1):e1002863. doi:10.1371/journal.pcbi.1002863.
    • (2013) PLoS Comput Biol. , vol.9 , Issue.1
    • Koren, O.1    Knights, D.2    Gonzalez, A.3    Waldron, L.4    Segata, N.5    Knight, R.6
  • 9
    • 77954142215 scopus 로고    scopus 로고
    • Nursing our microbiota: molecular linkages between bifidobacteria and milk oligosaccharides
    • Sela DA, Mills DA. Nursing our microbiota: molecular linkages between bifidobacteria and milk oligosaccharides. Trends in Microbiology. 2010;18(7):298-307. doi:10.1016/j.tim.2010.03.008.
    • (2010) Trends in Microbiology. , vol.18 , Issue.7 , pp. 298-307
    • Sela, D.A.1    Mills, D.A.2
  • 11
    • 84862141704 scopus 로고    scopus 로고
    • Human gut microbiome viewed across age and geography
    • Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, et al. Human gut microbiome viewed across age and geography. Nature. 2012;486(7402):222-7. http://www.nature.com/nature/journal/v486/n7402/ full/nature11053.html.
    • (2012) Nature. , vol.486 , Issue.7402 , pp. 222-227
    • Yatsunenko, T.1    Rey, F.E.2    Manary, M.J.3    Trehan, I.4    Dominguez-Bello, M.G.5    Contreras, M.6
  • 14
    • 85027927719 scopus 로고    scopus 로고
    • Enterotypes of the human gut microbiome
    • Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR et al. Enterotypes of the human gut microbiome. Nature 473: 174-180 doi:10. 1038/nature09944. http://www.nature.com/nature/journal/v473/n7346/full/ nature09944.html
    • Nature , vol.473 , pp. 174-180
    • Arumugam, M.1    Raes, J.2    Pelletier, E.3    Le Paslier, D.4    Yamada, T.5    Mende, D.R.6
  • 15
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • Consortium THMP. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486(7402):207-14. http://www.nature.com/nature/ journal/v486/n7402/full/nature11234.html.
    • (2012) Nature. , vol.486 , Issue.7402 , pp. 207-214
  • 16
    • 84892992144 scopus 로고    scopus 로고
    • Microbial enterotypes, inferred by the prevotella-to-bacteroides ratio, remained stable during a 6-month randomized controlled diet intervention with the New Nordic Diet
    • Roager HM, Licht TR, Poulsen SK, Larsen TM, Bahl MI. Microbial enterotypes, inferred by the prevotella-to-bacteroides ratio, remained stable during a 6-month randomized controlled diet intervention with the New Nordic Diet. Applied and Environmental Microbiology. 2014;80(3):1142-9. doi:10.1128/aem.03549-13.
    • (2014) Applied and Environmental Microbiology. , vol.80 , Issue.3 , pp. 1142-1149
    • Roager, H.M.1    Licht, T.R.2    Poulsen, S.K.3    Larsen, T.M.4    Bahl, M.I.5
  • 17
    • 84865733148 scopus 로고    scopus 로고
    • Inferring correlation networks from genomic survey data
    • Friedman J, Alm EJ. Inferring correlation networks from genomic survey data. PLoS Comput Biol. 2012;8(9):e1002687. doi:10.1371/journal.pcbi. 1002687.
    • (2012) PLoS Comput Biol. , vol.8 , Issue.9
    • Friedman, J.1    Alm, E.J.2
  • 18
    • 84901363655 scopus 로고    scopus 로고
    • Waste not, want not: why rarefying microbiome data is inadmissible
    • McMurdie PJ, Holmes S. Waste not, want not: why rarefying microbiome data is inadmissible. PLoS Comput Biol. 2014;10(4):e1003531. doi:10.1371/ journal.pcbi.1003531.
    • (2014) PLoS Comput Biol. , vol.10 , Issue.4
    • McMurdie, P.J.1    Holmes, S.2
  • 20
    • 0000629281 scopus 로고
    • Mathematical contributions to the theory of evolution. On a form of spurious correlation which may arise when indices are used in the measurement of organs
    • Pearson K. Mathematical contributions to the theory of evolution. On a form of spurious correlation which may arise when indices are used in the measurement of organs. Proceedings of the Royal Society of London. 1896; 60(359-367):489-98. doi:10.1098/rspl.1896.0076.
    • (1896) Proceedings of the Royal Society of London. , vol.60 , Issue.359-367 , pp. 489-498
    • Pearson, K.1
  • 21
    • 0035100888 scopus 로고    scopus 로고
    • Biomarkers and surrogate endpoints: preferred definitions and conceptual framework
    • Group BDW. Biomarkers and surrogate endpoints: preferred definitions and conceptual framework. Clinical Pharmacology and Therapeutics. 2001;69(3):89-95.
    • (2001) Clinical Pharmacology and Therapeutics. , vol.69 , Issue.3 , pp. 89-95
    • Group, B.D.W.1
  • 22
    • 84892828465 scopus 로고    scopus 로고
    • Diet rapidly and reproducibly alters the human gut microbiome
    • David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature. 2014; 505(7484):559-63. doi:10.1038/nature12820. http://www.nature.com/nature/ journal/v505/n7484/full/nature12820.html.
    • (2014) Nature. , vol.505 , Issue.7484 , pp. 559-563
    • David, L.A.1    Maurice, C.F.2    Carmody, R.N.3    Gootenberg, D.B.4    Button, J.E.5    Wolfe, B.E.6
  • 23
    • 84924040920 scopus 로고    scopus 로고
    • Structure of the gut microbiome following colonization with human feces determines colonic tumor burden
    • Baxter NT, Zackular JP, Chen GY, Schloss PD. Structure of the gut microbiome following colonization with human feces determines colonic tumor burden. Microbiome. 2014;2:20. doi:10.1186/2049-2618-2-20.
    • (2014) Microbiome. , vol.2 , pp. 20
    • Baxter, N.T.1    Zackular, J.P.2    Chen, G.Y.3    Schloss, P.D.4
  • 24
    • 84863022950 scopus 로고    scopus 로고
    • Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
    • Kostic AD, Gevers D, Pedamallu CS, Michaud M, Duke F, Earl AM, et al. Genomic analysis identifies association of Fusobacterium with colorectal carcinoma. Genome Research. 2012;22(2):292-8. doi:10.1101/gr.126573.111.
    • (2012) Genome Research. , vol.22 , Issue.2 , pp. 292-298
    • Kostic, A.D.1    Gevers, D.2    Pedamallu, C.S.3    Michaud, M.4    Duke, F.5    Earl, A.M.6
  • 25
    • 85016191902 scopus 로고    scopus 로고
    • Ecology of bacteria in the human gastrointestinal tract-identification of keystone and foundation taxa
    • Trosvik P, de Muinck EJ. Ecology of bacteria in the human gastrointestinal tract-identification of keystone and foundation taxa. Microbiome. 2015;3:44. doi:10.1186/s40168-015-0107-4.
    • (2015) Microbiome. , vol.3 , pp. 44
    • Trosvik, P.1    de Muinck, E.J.2
  • 26
    • 84873739311 scopus 로고    scopus 로고
    • The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
    • Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research. 2013;41(D1):D590-D6.
    • (2013) Nucleic Acids Research. , vol.41 D1 , pp. D590-D596
    • Quast, C.1    Pruesse, E.2    Yilmaz, P.3    Gerken, J.4    Schweer, T.5    Yarza, P.6
  • 29
    • 54549106898 scopus 로고    scopus 로고
    • Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
    • Liu Z, DeSantis TZ, Andersen GL, Knight R. Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucleic Acids Research. 2008;36(18):e120. doi:10.1093/nar/gkn491.
    • (2008) Nucleic Acids Research. , vol.36 , Issue.18
    • Liu, Z.1    DeSantis, T.Z.2    Andersen, G.L.3    Knight, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.