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Volumn 30, Issue , 2017, Pages 118-124

RecET recombination system driving chromosomal target gene replacement in Zymomonas mobilis

Author keywords

Dehydrogenase gene; Electroporation; Ethanol; Genetic manipulation; Gram negative; Industrial applications; Knock out; Primer; Production; Recombination; Vector

Indexed keywords

CHROMOSOMES; ENZYME ACTIVITY; ETHANOL; INDUSTRIAL APPLICATIONS; PRODUCTION; VECTORS;

EID: 85034055122     PISSN: None     EISSN: 07173458     Source Type: Journal    
DOI: 10.1016/j.ejbt.2017.10.005     Document Type: Article
Times cited : (13)

References (29)
  • 1
    • 34548863391 scopus 로고    scopus 로고
    • Zymomonas mobilis for fuel ethanol and higher value products
    • Rogers, P.L., Jeon, Y.J., Lee, K.J., et al. Zymomonas mobilis for fuel ethanol and higher value products. Adv Biochem Eng Biotechnol 108 (2007), 263–288 https://doi.org/10.1007/10_2007_060.
    • (2007) Adv Biochem Eng Biotechnol , vol.108 , pp. 263-288
    • Rogers, P.L.1    Jeon, Y.J.2    Lee, K.J.3
  • 2
    • 21144437397 scopus 로고    scopus 로고
    • The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4
    • Seo, J.S., Chong, H., Park, H.S., et al. The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4. Nat Biotechnol 23 (2005), 63–68 https://doi.org/10.1038/nbt1045.
    • (2005) Nat Biotechnol , vol.23 , pp. 63-68
    • Seo, J.S.1    Chong, H.2    Park, H.S.3
  • 3
    • 84955246351 scopus 로고    scopus 로고
    • The ecology of Zymomonas: a review
    • Weir, P.M., The ecology of Zymomonas: a review. Folia Microbiol 61:5 (2016), 385–392 https://doi.org/10.1007/s12223-016-0447-x.
    • (2016) Folia Microbiol , vol.61 , Issue.5 , pp. 385-392
    • Weir, P.M.1
  • 4
    • 84903421930 scopus 로고    scopus 로고
    • Zymomonas mobilis: a novel platform for future biorefineries
    • He, M.X., Wu, B., Qin, H., et al. Zymomonas mobilis: a novel platform for future biorefineries. Biotechnol Biofuels, 7, 2014, 101 https://doi.org/10.1186/1754-6834-7-101.
    • (2014) Biotechnol Biofuels , vol.7 , pp. 101
    • He, M.X.1    Wu, B.2    Qin, H.3
  • 5
    • 84868624503 scopus 로고    scopus 로고
    • Complete genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis centrotype ATCC 29191
    • Desiniotis, A., Kouvelis, V.N., Davenport, K., et al. Complete genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis centrotype ATCC 29191. J Bacteriol 194:21 (2012), 5966–5967 https://doi.org/10.1128/JB.01398-12.
    • (2012) J Bacteriol , vol.194 , Issue.21 , pp. 5966-5967
    • Desiniotis, A.1    Kouvelis, V.N.2    Davenport, K.3
  • 6
    • 84861999245 scopus 로고    scopus 로고
    • Transcriptome profiling of Zymomonas mobilis under furfural stress
    • He, M.X., Wu, B., Shui, Z.X., et al. Transcriptome profiling of Zymomonas mobilis under furfural stress. Appl Microbiol Biotechnol 95:1 (2012), 189–199 https://doi.org/10.1007/s00253-012-4155-4.
    • (2012) Appl Microbiol Biotechnol , vol.95 , Issue.1 , pp. 189-199
    • He, M.X.1    Wu, B.2    Shui, Z.X.3
  • 7
    • 78549287163 scopus 로고    scopus 로고
    • The genome-scale metabolic network analysis of Zymomonas mobilis ZM4 explains physiological features and suggests ethanol and succinic acid production strategies
    • Lee, K.Y., Park, J.M., Kim, T.Y., et al. The genome-scale metabolic network analysis of Zymomonas mobilis ZM4 explains physiological features and suggests ethanol and succinic acid production strategies. Microb Cell Fact, 9, 2010, 94 https://doi.org/10.1186/1475-2859-9-94.
    • (2010) Microb Cell Fact , vol.9 , pp. 94
    • Lee, K.Y.1    Park, J.M.2    Kim, T.Y.3
  • 8
    • 84923308098 scopus 로고    scopus 로고
    • 2 gas is an effective fertilizer for bioethanol production by Zymomonas mobilis
    • 2 gas is an effective fertilizer for bioethanol production by Zymomonas mobilis. Proc Natl Acad Sci 112:7 (2015), 2222–2226 https://doi.org/10.1073/pnas.1420663112.
    • (2015) Proc Natl Acad Sci , vol.112 , Issue.7 , pp. 2222-2226
    • Kremer, T.A.1    LaSarre, B.2    Posto, A.L.3
  • 9
    • 85012254087 scopus 로고    scopus 로고
    • Using the CRISPR/Cas9 system to eliminate native plasmids of Zymomonas mobilis ZM4
    • Cao, Q.H., Shao, H.H., Qiu, H., et al. Using the CRISPR/Cas9 system to eliminate native plasmids of Zymomonas mobilis ZM4. Biosci Biotechnol Biochem 81 (2017), 453–459 https://doi.org/10.1080/09168451.2016.1189312.
    • (2017) Biosci Biotechnol Biochem , vol.81 , pp. 453-459
    • Cao, Q.H.1    Shao, H.H.2    Qiu, H.3
  • 10
    • 79956067324 scopus 로고    scopus 로고
    • Design and construction of improved new vectors for Zymomonas mobilis recombinants
    • Dong, H.W., Bao, J., Ryu, D.D., et al. Design and construction of improved new vectors for Zymomonas mobilis recombinants. Biotechnol Bioeng 108 (2011), 1616–1627 https://doi.org/10.1002/bit.23106.
    • (2011) Biotechnol Bioeng , vol.108 , pp. 1616-1627
    • Dong, H.W.1    Bao, J.2    Ryu, D.D.3
  • 11
    • 84942373869 scopus 로고    scopus 로고
    • High-throughput sequencing reveals adaptation-induced mutations in pentose-fermenting strains of Zymomonas mobilis
    • Dunn, K.L., Rao, C.V., High-throughput sequencing reveals adaptation-induced mutations in pentose-fermenting strains of Zymomonas mobilis. Biotechnol Bioeng 112:11 (2015), 2228–2240 https://doi.org/10.1002/bit.25631.
    • (2015) Biotechnol Bioeng , vol.112 , Issue.11 , pp. 2228-2240
    • Dunn, K.L.1    Rao, C.V.2
  • 12
    • 84907690081 scopus 로고    scopus 로고
    • Insights into acetate toxicity in Zymomonas mobilis 8b using different substrates
    • Yang, S., Franden, M.A., Brown, S.D., et al. Insights into acetate toxicity in Zymomonas mobilis 8b using different substrates. Biotechnol Biofuels, 7, 2014, 140 https://doi.org/10.1186/s13068-014-0140-8.
    • (2014) Biotechnol Biofuels , vol.7 , pp. 140
    • Yang, S.1    Franden, M.A.2    Brown, S.D.3
  • 13
    • 84937033232 scopus 로고    scopus 로고
    • Construction of a novel secretion expression system guided by native signal peptide of PhoD in Zymomonas mobilis
    • Wu, B., He, M.X., Feng, H., et al. Construction of a novel secretion expression system guided by native signal peptide of PhoD in Zymomonas mobilis. Biosci Biotechnol Biochem 78:4 (2014), 708–713 https://doi.org/10.1080/09168451.2014.896736.
    • (2014) Biosci Biotechnol Biochem , vol.78 , Issue.4 , pp. 708-713
    • Wu, B.1    He, M.X.2    Feng, H.3
  • 14
    • 84930765100 scopus 로고    scopus 로고
    • Adaptive laboratory evolution of ethanologenic Zymomonas mobilis strain tolerant to furfural and acetic acid inhibitors
    • Shui, Z.X., Qin, H., Wu, B., et al. Adaptive laboratory evolution of ethanologenic Zymomonas mobilis strain tolerant to furfural and acetic acid inhibitors. Appl Microbiol Biotechnol 99:13 (2015), 5739–5748 https://doi.org/10.1007/s00253-015-6616-z.
    • (2015) Appl Microbiol Biotechnol , vol.99 , Issue.13 , pp. 5739-5748
    • Shui, Z.X.1    Qin, H.2    Wu, B.3
  • 15
    • 0031664853 scopus 로고    scopus 로고
    • A new logic for DNA engineering using recombination in Escherichia coli
    • Zhang, Y., Buchholz, F., Muyrers, J.P., et al. A new logic for DNA engineering using recombination in Escherichia coli. Nat Genet 20 (1998), 123–128 https://doi.org/10.1038/2417.
    • (1998) Nat Genet , vol.20 , pp. 123-128
    • Zhang, Y.1    Buchholz, F.2    Muyrers, J.P.3
  • 16
    • 54349084011 scopus 로고    scopus 로고
    • Escherichia coli strains with promoter libraries constructed by red/ET recombination pave the way for transcriptional fine-tuning
    • Braatsch, S., Helmark, S., Kranz, H., et al. Escherichia coli strains with promoter libraries constructed by red/ET recombination pave the way for transcriptional fine-tuning. Biotechniques 45:3 (2008), 335–337 https://doi.org/10.2144/000112907.
    • (2008) Biotechniques , vol.45 , Issue.3 , pp. 335-337
    • Braatsch, S.1    Helmark, S.2    Kranz, H.3
  • 17
    • 84884594038 scopus 로고    scopus 로고
    • Hydrogen sulfide formation as well as ethanol production in different media by cysND- and/or cysIJ-inactivated mutant strains of Zymomonas mobilis ZM4
    • Tan, T., Liu, C., Liu, L., et al. Hydrogen sulfide formation as well as ethanol production in different media by cysND- and/or cysIJ-inactivated mutant strains of Zymomonas mobilis ZM4. Bioprocess Biosyst Eng 36:10 (2013), 1363–1373 https://doi.org/10.1007/s00449-012-0839-5.
    • (2013) Bioprocess Biosyst Eng , vol.36 , Issue.10 , pp. 1363-1373
    • Tan, T.1    Liu, C.2    Liu, L.3
  • 18
    • 85027946740 scopus 로고    scopus 로고
    • Engineering efficient xylose metabolism into an acetic acid-tolerant Zymomonas mobilis strain by introducing adaptation-induced mutations
    • Agrawal, M., Wang, Y., Chen, R.R., Engineering efficient xylose metabolism into an acetic acid-tolerant Zymomonas mobilis strain by introducing adaptation-induced mutations. Biotechnol Lett 34:10 (2012), 1825–1832 https://doi.org/10.1007/s10529-012-0970-z.
    • (2012) Biotechnol Lett , vol.34 , Issue.10 , pp. 1825-1832
    • Agrawal, M.1    Wang, Y.2    Chen, R.R.3
  • 19
    • 84857498858 scopus 로고    scopus 로고
    • High efficiency recombineering in lactic acid bacteria. Nucleic Acids Res ()
    • van Pijkeren JP, Britton RA. High efficiency recombineering in lactic acid bacteria. Nucleic Acids Res 2012;40(10):e76. https://doi.org/10.1093/nar/gks147.
    • (2012) , vol.40 , Issue.10 , pp. e76
    • van Pijkeren, J.P.1    Britton, R.A.2
  • 20
    • 15744370033 scopus 로고    scopus 로고
    • Heterologous expression of a myxobacterial natural products assembly line in pseudomonads via Red/ET recombineering
    • Wenzel, S.C., Gross, F., Zhang, Y., et al. Heterologous expression of a myxobacterial natural products assembly line in pseudomonads via Red/ET recombineering. Chem Biol 12:3 (2005), 349–356 https://doi.org/10.1016/j.chembiol.2004.12.012.
    • (2005) Chem Biol , vol.12 , Issue.3 , pp. 349-356
    • Wenzel, S.C.1    Gross, F.2    Zhang, Y.3
  • 21
    • 84910135412 scopus 로고    scopus 로고
    • Seamless stitching of biosynthetic gene cluster containing type I polyketide synthases using Red/ET mediated recombination for construction of stably co-existing plasmids
    • Su, C., Zhao, X.Q., Wang, H.N., et al. Seamless stitching of biosynthetic gene cluster containing type I polyketide synthases using Red/ET mediated recombination for construction of stably co-existing plasmids. Gene 554:2 (2015), 233–240 https://doi.org/10.1016/j.gene.2014.10.022.
    • (2015) Gene , vol.554 , Issue.2 , pp. 233-240
    • Su, C.1    Zhao, X.Q.2    Wang, H.N.3
  • 22
    • 84865541446 scopus 로고    scopus 로고
    • Direct cloning, genetic engineering, and heterologous expression of the syringolin biosynthetic gene cluster in E. coli through Red/ET recombineering
    • Bian, X., Huang, F., Stewart, F.A., et al. Direct cloning, genetic engineering, and heterologous expression of the syringolin biosynthetic gene cluster in E. coli through Red/ET recombineering. Chembiochem 13:13 (2013), 1946–1952 https://doi.org/10.1002/cbic.201200310.
    • (2013) Chembiochem , vol.13 , Issue.13 , pp. 1946-1952
    • Bian, X.1    Huang, F.2    Stewart, F.A.3
  • 23
    • 84954526600 scopus 로고    scopus 로고
    • Three new shuttle vectors for heterologous expression in Zymomonas mobilis
    • Cao, Q.H., Li, T., Shao, H.H., et al. Three new shuttle vectors for heterologous expression in Zymomonas mobilis. Electron J Biotechnol 19 (2016), 33–40 https://doi.org/10.1016/j.ejbt.2015.11.004.
    • (2016) Electron J Biotechnol , vol.19 , pp. 33-40
    • Cao, Q.H.1    Li, T.2    Shao, H.H.3
  • 24
    • 33847608289 scopus 로고    scopus 로고
    • Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC
    • Li, M.Z., Elledge, S.J., Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC. Nat Methods 4 (2007), 251–256 https://doi.org/10.1038/nmeth1010.
    • (2007) Nat Methods , vol.4 , pp. 251-256
    • Li, M.Z.1    Elledge, S.J.2
  • 25
    • 84865749207 scopus 로고    scopus 로고
    • Cloning and expression of amyE gene from Bacillus subtilis in Zymomonas mobilis and direct production of ethanol from soluble starch
    • Wang, G.J., Wang, Z.S., Zhang, Y.W., et al. Cloning and expression of amyE gene from Bacillus subtilis in Zymomonas mobilis and direct production of ethanol from soluble starch. Biotechnol Bioproc E 17:4 (2012), 780–786 https://doi.org/10.1007/s12257-011-0490-z.
    • (2012) Biotechnol Bioproc E , vol.17 , Issue.4 , pp. 780-786
    • Wang, G.J.1    Wang, Z.S.2    Zhang, Y.W.3
  • 26
    • 84872744524 scopus 로고    scopus 로고
    • Construction of an unmarked Zymomonas mobilis mutant using a site-specific FLP recombinase FLP recombinase for Z. mobilis mutant construction
    • Zou, S.L., Hong, J.F., Wang, C., et al. Construction of an unmarked Zymomonas mobilis mutant using a site-specific FLP recombinase FLP recombinase for Z. mobilis mutant construction. Food Technol Biotechnol 50:4 (2012), 406–411.
    • (2012) Food Technol Biotechnol , vol.50 , Issue.4 , pp. 406-411
    • Zou, S.L.1    Hong, J.F.2    Wang, C.3
  • 27
    • 79251568288 scopus 로고    scopus 로고
    • DNA restriction-modification systems in the ethanologen, Zymomonas mobilis ZM4
    • Kerr, A.L., Jeon, Y.J., Svenson, C.J., et al. DNA restriction-modification systems in the ethanologen, Zymomonas mobilis ZM4. Appl Microbiol Biotechnol 89:3 (2011), 761–769 https://doi.org/10.1007/s00253-010-2936-1.
    • (2011) Appl Microbiol Biotechnol , vol.89 , Issue.3 , pp. 761-769
    • Kerr, A.L.1    Jeon, Y.J.2    Svenson, C.J.3
  • 28
    • 84862333740 scopus 로고    scopus 로고
    • Effect of ADH II deficiency on the intracellular redox homeostasis in Zymomonas mobilis
    • Galinina, N., Lasa, Z., Strazdina, I., et al. Effect of ADH II deficiency on the intracellular redox homeostasis in Zymomonas mobilis. Scientific World Journal, 2012, 2012, 742610 https://doi.org/10.1100/2012/742610.
    • (2012) Scientific World Journal , vol.2012 , pp. 742610
    • Galinina, N.1    Lasa, Z.2    Strazdina, I.3
  • 29
    • 33748316469 scopus 로고    scopus 로고
    • Respiratory behaviour of a Zymomonas mobilis adhB::kan(r) mutant supports the hypothesis of two alcohol dehydrogenase isoenzymes catalysing opposite reactions
    • Kalnenieks, U., Galinina, N., Toma, M.M., et al. Respiratory behaviour of a Zymomonas mobilis adhB::kan(r) mutant supports the hypothesis of two alcohol dehydrogenase isoenzymes catalysing opposite reactions. FEBS Lett 580:21 (2006), 5084–5088 https://doi.org/10.1016/j.febslet.2006.08.034.
    • (2006) FEBS Lett , vol.580 , Issue.21 , pp. 5084-5088
    • Kalnenieks, U.1    Galinina, N.2    Toma, M.M.3


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